© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophun1|1897 |
| Gene name | |
| Location | Contig_185:18409..19434 |
| Strand | - |
| Gene length (bp) | 1025 |
| Transcript length (bp) | 882 |
| Coding sequence length (bp) | 882 |
| Protein length (aa) | 294 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04479 | RTA1 | RTA1 like protein | 7.6E-21 | 103 | 280 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016021 | integral component of membrane | Yes |
| GO:0110165 | cellular anatomical entity | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0005575 | cellular_component | No |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 77 | 99 | 22 |
| 2 | 106 | 128 | 22 |
| 3 | 143 | 165 | 22 |
| 4 | 178 | 200 | 22 |
| 5 | 215 | 237 | 22 |
| 6 | 258 | 280 | 22 |
| Orthofinder run ID | 4 |
| Orthogroup | 7446 |
| Change Orthofinder run |
| Species | Protein ID |
|---|---|
| Ophiocordyceps camponoti-floridani | Ophcf2|07088 |
| Ophiocordyceps camponoti-rufipedis | Ophun1|1897 (this protein) |
| Ophiocordyceps kimflemingae | Ophio5|3566 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophun1|1897 MILSSTLYGSLNLTTAPASPESFSSPLHLVSPGRRPGTRCGDAFINARHWPEASAMASTASLVCPPEPLRHPLPP SALSVSVTFVALWAVLAIVHFLLGRRGVARFVICAFLLYLAPVFFTAAIHAAVVEALADVSRTSRHLSPVLVDGL FIGLDIVCFALVMVGSALDTTTGRGAASTLLLAGLAVELTTLTAAVAVLVDLWVVRSRSTHPPRFTWRRRISLLA LALASLFLVVRCAYDVADVCRGWLSVAEETTLLIVDGVLTLVVGLILCVVHAARIPQVSISEETVEQK* |
| Coding | >Ophun1|1897 ATGATCCTCTCCAGCACACTGTACGGCAGCCTCAACCTGACGACAGCTCCTGCGTCCCCCGAGTCCTTCAGCTCC CCCCTTCATCTCGTCTCCCCTGGTCGACGCCCTGGCACCCGCTGTGGCGATGCCTTCATCAATGCCCGACACTGG CCTGAGGCCTCTGCCATGGCGTCGACCGCGTCGCTCGTCTGTCCGCCAGAACCGCTCCGTCATCCGCTCCCTCCA TCTGCGCTGTCCGTCAGCGTGACTTTCGTTGCTCTCTGGGCCGTCTTGGCCATTGTCCACTTTCTTCTCGGTCGT CGTGGCGTCGCTCGTTTCGTCATCTGCGCATTTCTTCTCTATCTCGCGCCCGTCTTCTTCACGGCTGCCATTCAC GCTGCTGTCGTCGAGGCCTTGGCTGATGTGTCGCGGACATCGCGCCATCTGTCGCCGGTTCTTGTCGATGGCCTC TTCATCGGTCTCGATATCGTGTGCTTCGCTCTCGTCATGGTTGGCAGCGCTTTGGATACCACAACGGGTCGTGGT GCTGCCTCGACGTTGCTCTTGGCTGGCCTTGCAGTGGAATTGACGACGCTGACTGCCGCTGTGGCTGTTCTCGTC GACCTCTGGGTTGTTCGCTCTCGCTCTACTCATCCGCCACGCTTCACCTGGCGGCGCAGAATCTCGCTACTTGCT CTGGCCCTGGCCTCCCTCTTTCTCGTCGTTCGCTGTGCCTACGACGTCGCCGACGTGTGCCGCGGCTGGCTGTCA GTGGCAGAAGAGACAACTCTGCTCATCGTCGACGGCGTCTTGACCCTCGTCGTTGGCTTGATCCTCTGTGTCGTT CACGCCGCTCGCATCCCCCAGGTGTCCATCTCAGAAGAAACCGTGGAGCAAAAGTAG |
| Transcript | >Ophun1|1897 ATGATCCTCTCCAGCACACTGTACGGCAGCCTCAACCTGACGACAGCTCCTGCGTCCCCCGAGTCCTTCAGCTCC CCCCTTCATCTCGTCTCCCCTGGTCGACGCCCTGGCACCCGCTGTGGCGATGCCTTCATCAATGCCCGACACTGG CCTGAGGCCTCTGCCATGGCGTCGACCGCGTCGCTCGTCTGTCCGCCAGAACCGCTCCGTCATCCGCTCCCTCCA TCTGCGCTGTCCGTCAGCGTGACTTTCGTTGCTCTCTGGGCCGTCTTGGCCATTGTCCACTTTCTTCTCGGTCGT CGTGGCGTCGCTCGTTTCGTCATCTGCGCATTTCTTCTCTATCTCGCGCCCGTCTTCTTCACGGCTGCCATTCAC GCTGCTGTCGTCGAGGCCTTGGCTGATGTGTCGCGGACATCGCGCCATCTGTCGCCGGTTCTTGTCGATGGCCTC TTCATCGGTCTCGATATCGTGTGCTTCGCTCTCGTCATGGTTGGCAGCGCTTTGGATACCACAACGGGTCGTGGT GCTGCCTCGACGTTGCTCTTGGCTGGCCTTGCAGTGGAATTGACGACGCTGACTGCCGCTGTGGCTGTTCTCGTC GACCTCTGGGTTGTTCGCTCTCGCTCTACTCATCCGCCACGCTTCACCTGGCGGCGCAGAATCTCGCTACTTGCT CTGGCCCTGGCCTCCCTCTTTCTCGTCGTTCGCTGTGCCTACGACGTCGCCGACGTGTGCCGCGGCTGGCTGTCA GTGGCAGAAGAGACAACTCTGCTCATCGTCGACGGCGTCTTGACCCTCGTCGTTGGCTTGATCCTCTGTGTCGTT CACGCCGCTCGCATCCCCCAGGTGTCCATCTCAGAAGAAACCGTGGAGCAAAAGTAG |
| Gene | >Ophun1|1897 ATGATCCTCTCCAGCACACTGTACGGCAGCCTCAACCTGACGACAGCTCCTGCGTCCCCCGAGTCCTTCAGCTCC CCCCTTCATCTCGTCTCCCCTGGTCGACGCCCTGGCACCCGCTGTGGCGATGCCTTCATCAATGCCCGACACTGG CCTGAGGCCTCTGCCATGGCGTCGACCGCGTCGCTCGTCTGTCCGCCAGAACCGCTCCGTCATCCGCTCCCTCCA TCTGCGCTGTCCGTCAGCGTGACTTTCGTTGCTCTCTGGGCCGTCTTGGCCATTGTCCACTTTCTTCTCGGTCGT CGTGGCGTCGCTCGTTTCGTCATCTGCGCATGTATCGGGTGTCTCTTGGCGCTGGGGGCTTTCGTCGGGGGTATC GTGCGATGGCGTTATGCCCTTTCGTGCGCTGGCTTCGCTGCTGAAGTTGGTATGAGCCTTGAGTCTTTTGTTGTG GCCTTTTGTCGAGTTATCTTGCAGTTCTTCTCTATCTCGCGCCCGTCTTCTTCACGGCTGCCATTCACGCTGCTG TCGTCGAGGCCTTGGCTGATGTGTCGCGGACATCGCGCCATCTGTCGCCGGTTCTTGTCGATGGCCTCTTCATCG GTCTCGATATCGTGTGCTTCGCTCTCGTCATGGTTGGCAGCGCTTTGGATACCACAACGGGTCGTGGTGCTGCCT CGACGTTGCTCTTGGCTGGCCTTGCAGTGGAATTGACGACGCTGACTGCCGCTGTGGCTGTTCTCGTCGACCTCT GGGTTGTTCGCTCTCGCTCTACTCATCCGCCACGCTTCACCTGGCGGCGCAGAATCTCGCTACTTGCTCTGGCCC TGGCCTCCCTCTTTCTCGTCGTTCGCTGTGCCTACGACGTCGCCGACGTGTGCCGCGGCTGGCTGTCAGTGGCAG AAGAGACAACTCTGCTCATCGTCGACGGCGTCTTGACCCTCGTCGTTGGCTTGATCCTCTGTGTCGTTCACGCCG CTCGCATCCCCCAGGTGTCCATCTCAGAAGAAACCGTGGAGCAAAAGTAG |