Fungal Genomics

at Utrecht University

General Properties

Protein IDOphun1|1874
Gene name
LocationContig_1830:87..1208
Strand-
Gene length (bp)1121
Transcript length (bp)894
Coding sequence length (bp)894
Protein length (aa) 298

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PFAM Domains

(None)

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|O94402|ZIP2_SCHPO Probable zinc transporter zip2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=zip2 PE=3 SV=2 15 125 4.0E-07

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 20 0.5

Transmembrane Domains

Domain # Start End Length
1 20 39 19
2 59 81 22
3 99 121 22

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophun1|1874
MLQSAMDLVARSLDNDTRGWIMAVVSGVACVLGAAIICVDVVVRLFPGKHAFRIQDSNVFLASSLSLSFGVMLFS
SLFSMLPESKEYLTHDAHWDDQSAGFVMMACFCAGFVGIQAVSRLLHQYMPSHVVDCDHSHAETDALQPQGRRLS
RRRSSLVDRARRRLSRPSSATPHVKDRGSRPDINGAARESTPLLAQHHLPVTDSQPPASRGRTTTTAADSALARR
PSMYHVQKRVMSFVKDTKCGCDEEGMCYGYTDPCGQECFKHLSTKRSSHGARHPTTLRTTTGPLYPGPLPPP*
Coding >Ophun1|1874
ATGCTCCAGTCGGCCATGGACCTGGTCGCCCGCAGCCTTGACAATGATACCCGCGGCTGGATCATGGCTGTTGTC
AGCGGCGTCGCCTGCGTGTTGGGAGCGGCCATCATCTGCGTCGATGTCGTCGTCCGTCTCTTCCCAGGGAAGCAC
GCCTTTCGCATCCAGGACAGCAACGTCTTCCTCGCCTCGTCGCTAAGCCTCAGCTTCGGCGTCATGCTCTTCTCC
TCCCTCTTCAGCATGCTCCCCGAATCGAAAGAATATCTCACCCACGACGCCCACTGGGACGACCAATCAGCCGGC
TTCGTCATGATGGCCTGCTTCTGCGCCGGCTTCGTCGGCATCCAGGCTGTTTCTCGATTGCTGCACCAGTACATG
CCATCCCACGTCGTCGACTGCGATCATTCCCACGCCGAGACCGACGCCCTCCAGCCACAGGGCCGTCGTCTCTCG
CGTCGACGCTCCAGCCTCGTCGATCGCGCTCGTCGCCGGCTCTCGCGTCCGTCTTCCGCCACTCCCCATGTCAAG
GACCGCGGCTCTCGGCCGGACATTAACGGCGCGGCCCGCGAGTCGACGCCCCTGCTCGCTCAGCATCATCTCCCA
GTCACCGACTCCCAGCCGCCAGCCAGTCGGGGCCGTACTACGACTACCGCCGCTGACTCGGCCCTCGCTCGTCGT
CCCTCCATGTATCACGTTCAGAAGCGCGTCATGTCCTTCGTCAAGGATACCAAATGCGGCTGCGACGAGGAGGGC
ATGTGCTACGGCTACACCGACCCTTGTGGCCAGGAGTGCTTCAAGCATCTGTCCACCAAGCGCTCCTCTCACGGT
GCTCGTCATCCGACTACGCTGCGTACCACCACCGGCCCCCTCTATCCGGGCCCCTTACCACCCCCTTGA
Transcript >Ophun1|1874
ATGCTCCAGTCGGCCATGGACCTGGTCGCCCGCAGCCTTGACAATGATACCCGCGGCTGGATCATGGCTGTTGTC
AGCGGCGTCGCCTGCGTGTTGGGAGCGGCCATCATCTGCGTCGATGTCGTCGTCCGTCTCTTCCCAGGGAAGCAC
GCCTTTCGCATCCAGGACAGCAACGTCTTCCTCGCCTCGTCGCTAAGCCTCAGCTTCGGCGTCATGCTCTTCTCC
TCCCTCTTCAGCATGCTCCCCGAATCGAAAGAATATCTCACCCACGACGCCCACTGGGACGACCAATCAGCCGGC
TTCGTCATGATGGCCTGCTTCTGCGCCGGCTTCGTCGGCATCCAGGCTGTTTCTCGATTGCTGCACCAGTACATG
CCATCCCACGTCGTCGACTGCGATCATTCCCACGCCGAGACCGACGCCCTCCAGCCACAGGGCCGTCGTCTCTCG
CGTCGACGCTCCAGCCTCGTCGATCGCGCTCGTCGCCGGCTCTCGCGTCCGTCTTCCGCCACTCCCCATGTCAAG
GACCGCGGCTCTCGGCCGGACATTAACGGCGCGGCCCGCGAGTCGACGCCCCTGCTCGCTCAGCATCATCTCCCA
GTCACCGACTCCCAGCCGCCAGCCAGTCGGGGCCGTACTACGACTACCGCCGCTGACTCGGCCCTCGCTCGTCGT
CCCTCCATGTATCACGTTCAGAAGCGCGTCATGTCCTTCGTCAAGGATACCAAATGCGGCTGCGACGAGGAGGGC
ATGTGCTACGGCTACACCGACCCTTGTGGCCAGGAGTGCTTCAAGCATCTGTCCACCAAGCGCTCCTCTCACGGT
GCTCGTCATCCGACTACGCTGCGTACCACCACCGGCCCCCTCTATCCGGGCCCCTTACCACCCCCTTGA
Gene >Ophun1|1874
ATGCTCCAGTCGGCCATGGACCTGGTCGCCCGCAGCCTTGACAATGATACCCGCGGCTGGATCATGGCTGTTGTC
AGCGGCGTCGGTGCGTCTTCCTCCCCCCCCGGCTTTTGCGCCTCGCTGACTCGAGAGGGAAAGCCTGCGTGTTGG
GAGCGGCCATCATCTGCGTCGATGTCGTCGTCCGTCTCTTCCCAGGGAAGCACGCCTTTCGCATCCAGGACAGCA
ACGTCTTCCTCGCCTCGTCGCTAAGCCTCAGCTTCGGCGTCATGGTTCGTCACCTCGATGGAAAATCAACAGCCG
AGACTAACCTATACCCCTCCATCCCAGCTCTTCTCCTCCCTCTTCAGCATGCTCCCCGAATCGAAAGAATATCTC
ACCCACGACGCCCACTGGGACGACCAATCAGCCGGCTTCGTCATGATGGCCTGCTTCTGCGCCGGCTTCGTCGGC
ATCCAGGCTGTTTCTCGATTGCTGCACCAGTACATGCCATCCCACGTCGTCGACTGCGATCATTCCCACGCCGAG
ACCGACGCCCTCCAGCCACAGGGCCGTCGTCTCTCGCGTCGACGCTCCAGCCTCGTCGATCGCGCTCGTCGCCGG
CTCTCGCGTCCGTCTTCCGCCACTCCCCATGTCAAGGACCGCGGCTCTCGGCCGGACATTAACGGCGCGGCCCGC
GAGTCGACGCCCCTGCTCGCTCAGCATCATCTCCCAGTCACCGACTCCCAGCCGCCAGCCAGTCGGGGCCGTACT
ACGACTACCGCCGCTGACTCGGCCCTCGCTCGTCGTCCCTCCATGTATCACGTTCAGAAGCGCGTCATGTCCTTC
GTCAAGGATACCAAATGCGGCTGCGACGAGGAGGGCATGTGCTACGGCTACACCGACCCTTGTGGCCAGGAGTGC
TTCAAGCATCTGTCCACCAAGCGCTCCTCTCACGGTGCTCGTCATCCGACTACGCTGCGTACCACCACCGGCCCC
CTCTATCCGGGCCCCTTACCGTCCGCCTCCAGCAACGACCATCAGCCCGTTCCCGAAGGCGTCGACCCCATCAGT
CCTCTCTTCCGCACCAGCCGCGCCGCCTCCCGCGAACCCATTCAAGACGCCGACGACCAAGACCCCCTTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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