© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophun1|1803 |
| Gene name | |
| Location | Contig_18:8510..9799 |
| Strand | - |
| Gene length (bp) | 1289 |
| Transcript length (bp) | 993 |
| Coding sequence length (bp) | 993 |
| Protein length (aa) | 331 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF03446 | NAD_binding_2 | NAD binding domain of 6-phosphogluconate dehydrogenase | 4.4E-37 | 27 | 195 |
| PF14833 | NAD_binding_11 | NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase | 2.1E-26 | 198 | 325 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9SUC0|3HIDH_ARATH | Probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Arabidopsis thaliana GN=At4g20930 PE=2 SV=3 | 29 | 326 | 1.0E-67 |
| sp|Q9V8M5|3HIDH_DROME | Probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Drosophila melanogaster GN=CG15093 PE=2 SV=2 | 29 | 323 | 2.0E-65 |
| sp|Q54CX6|3HIDH_DICDI | Probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Dictyostelium discoideum GN=hibA PE=3 SV=1 | 29 | 326 | 7.0E-65 |
| sp|Q9XTI0|3HIDH_CAEEL | Probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Caenorhabditis elegans GN=B0250.5 PE=3 SV=1 | 29 | 326 | 4.0E-64 |
| sp|P29266|3HIDH_RAT | 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Hibadh PE=1 SV=3 | 29 | 326 | 6.0E-64 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9SUC0|3HIDH_ARATH | Probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Arabidopsis thaliana GN=At4g20930 PE=2 SV=3 | 29 | 326 | 1.0E-67 |
| sp|Q9V8M5|3HIDH_DROME | Probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Drosophila melanogaster GN=CG15093 PE=2 SV=2 | 29 | 323 | 2.0E-65 |
| sp|Q54CX6|3HIDH_DICDI | Probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Dictyostelium discoideum GN=hibA PE=3 SV=1 | 29 | 326 | 7.0E-65 |
| sp|Q9XTI0|3HIDH_CAEEL | Probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Caenorhabditis elegans GN=B0250.5 PE=3 SV=1 | 29 | 326 | 4.0E-64 |
| sp|P29266|3HIDH_RAT | 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Hibadh PE=1 SV=3 | 29 | 326 | 6.0E-64 |
| sp|Q99L13|3HIDH_MOUSE | 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Mus musculus GN=Hibadh PE=1 SV=1 | 29 | 326 | 2.0E-63 |
| sp|Q5R5E7|3HIDH_PONAB | 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Pongo abelii GN=HIBADH PE=2 SV=1 | 29 | 330 | 4.0E-62 |
| sp|P31937|3HIDH_HUMAN | 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Homo sapiens GN=HIBADH PE=1 SV=2 | 29 | 330 | 4.0E-62 |
| sp|Q2HJD7|3HIDH_BOVIN | 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Bos taurus GN=HIBADH PE=2 SV=1 | 29 | 330 | 1.0E-60 |
| sp|P28811|MMSB_PSEAE | 3-hydroxyisobutyrate dehydrogenase OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=mmsB PE=2 SV=1 | 28 | 330 | 3.0E-51 |
| sp|P9WNY5|MMSB_MYCTU | Probable 3-hydroxyisobutyrate dehydrogenase OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) GN=mmsB PE=1 SV=1 | 24 | 326 | 2.0E-44 |
| sp|P63936|MMSB_MYCBO | Probable 3-hydroxyisobutyrate dehydrogenase OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) GN=mmsB PE=3 SV=1 | 24 | 326 | 2.0E-44 |
| sp|P9WNY4|MMSB_MYCTO | Probable 3-hydroxyisobutyrate dehydrogenase OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) GN=mmsB PE=3 SV=1 | 24 | 326 | 2.0E-44 |
| sp|Q9I5I6|SERDH_PSEAE | NAD-dependent L-serine dehydrogenase OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=PA0743 PE=1 SV=1 | 24 | 324 | 3.0E-40 |
| sp|Q0QLF5|HMGD_EUBBA | 2-(hydroxymethyl)glutarate dehydrogenase OS=Eubacterium barkeri GN=Hgd PE=1 SV=1 | 29 | 313 | 5.0E-35 |
| sp|P0ABQ2|GARR_ECOLI | 2-hydroxy-3-oxopropionate reductase OS=Escherichia coli (strain K12) GN=garR PE=1 SV=1 | 29 | 297 | 9.0E-25 |
| sp|P0ABQ3|GARR_ECOL6 | 2-hydroxy-3-oxopropionate reductase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=garR PE=3 SV=1 | 29 | 297 | 9.0E-25 |
| sp|O34948|YKWC_BACSU | Uncharacterized oxidoreductase YkwC OS=Bacillus subtilis (strain 168) GN=ykwC PE=3 SV=1 | 29 | 306 | 1.0E-22 |
| sp|P0A9V8|SQUU_ECOLI | 3-sulfolactaldehyde reductase OS=Escherichia coli (strain K12) GN=yihU PE=1 SV=1 | 26 | 326 | 2.0E-22 |
| sp|P0A9V9|SQUU_SHIFL | 3-sulfolactaldehyde reductase OS=Shigella flexneri GN=yihU PE=3 SV=1 | 26 | 326 | 2.0E-22 |
| sp|Q9L7S0|SQUU_SALTY | 3-sulfolactaldehyde reductase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=yihU PE=3 SV=1 | 28 | 326 | 3.0E-21 |
| sp|P77161|GLXR_ECOLI | 2-hydroxy-3-oxopropionate reductase OS=Escherichia coli (strain K12) GN=glxR PE=2 SV=1 | 29 | 295 | 8.0E-21 |
| sp|Q55702|Y229_SYNY3 | Uncharacterized oxidoreductase slr0229 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr0229 PE=3 SV=1 | 28 | 289 | 1.0E-18 |
| sp|O33730|Y1503_SHEFN | Uncharacterized oxidoreductase Sfri_1503 OS=Shewanella frigidimarina (strain NCIMB 400) GN=Sfri_1503 PE=3 SV=2 | 28 | 298 | 9.0E-15 |
| sp|Q9SZE1|3HID1_ARATH | Probable 3-hydroxyisobutyrate dehydrogenase-like 1, mitochondrial OS=Arabidopsis thaliana GN=At4g29120 PE=1 SV=1 | 29 | 292 | 3.0E-13 |
| sp|F4I907|GLYR2_ARATH | Glyoxylate/succinic semialdehyde reductase 2, chloroplastic OS=Arabidopsis thaliana GN=GLYR2 PE=1 SV=1 | 26 | 322 | 1.0E-12 |
| sp|Q9LSV0|GLYR1_ARATH | Glyoxylate/succinic semialdehyde reductase 1 OS=Arabidopsis thaliana GN=GLYR1 PE=1 SV=1 | 29 | 308 | 2.0E-12 |
| sp|Q175F8|GLYR1_AEDAE | Putative oxidoreductase GLYR1 homolog OS=Aedes aegypti GN=AAEL006684 PE=3 SV=1 | 27 | 323 | 4.0E-11 |
| sp|P9WNY2|Y770_MYCTO | Uncharacterized oxidoreductase MT0794 OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) GN=MT0794 PE=3 SV=1 | 29 | 302 | 6.0E-11 |
| sp|P9WNY3|Y770_MYCTU | Uncharacterized oxidoreductase Rv0770 OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) GN=Rv0770 PE=1 SV=1 | 29 | 302 | 6.0E-11 |
| sp|Q7Q161|GLYR1_ANOGA | Putative oxidoreductase GLYR1 homolog OS=Anopheles gambiae GN=AGAP009949 PE=3 SV=5 | 8 | 323 | 6.0E-10 |
| sp|Q5R7T2|GLYR1_PONAB | Putative oxidoreductase GLYR1 OS=Pongo abelii GN=GLYR1 PE=2 SV=2 | 29 | 326 | 2.0E-08 |
| sp|Q5ZLS7|GLYR1_CHICK | Putative oxidoreductase GLYR1 OS=Gallus gallus GN=GLYR1 PE=2 SV=1 | 29 | 326 | 4.0E-08 |
| sp|Q5RKH0|GLYR1_RAT | Putative oxidoreductase GLYR1 OS=Rattus norvegicus GN=Glyr1 PE=1 SV=1 | 29 | 326 | 5.0E-08 |
| sp|Q49A26|GLYR1_HUMAN | Putative oxidoreductase GLYR1 OS=Homo sapiens GN=GLYR1 PE=1 SV=3 | 29 | 326 | 6.0E-08 |
| sp|A4FUF0|GLYR1_BOVIN | Putative oxidoreductase GLYR1 OS=Bos taurus GN=GLYR1 PE=2 SV=1 | 29 | 326 | 8.0E-08 |
| sp|O34969|YFJR_BACSU | Uncharacterized oxidoreductase YfjR OS=Bacillus subtilis (strain 168) GN=yfjR PE=3 SV=2 | 28 | 310 | 8.0E-08 |
| sp|Q922P9|GLYR1_MOUSE | Putative oxidoreductase GLYR1 OS=Mus musculus GN=Glyr1 PE=1 SV=1 | 29 | 326 | 1.0E-07 |
| sp|Q46888|YGBJ_ECOLI | Uncharacterized oxidoreductase YgbJ OS=Escherichia coli (strain K12) GN=ygbJ PE=3 SV=1 | 29 | 327 | 1.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0050661 | NADP binding | Yes |
| GO:0051287 | NAD binding | Yes |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0003674 | molecular_function | No |
| GO:0000166 | nucleotide binding | No |
| GO:0036094 | small molecule binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0005488 | binding | No |
| GO:1901265 | nucleoside phosphate binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 21 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophun1|1803 MRLACLRLAASVQRRGFASTARRLDSYAFVGLGQMGFQMVKNLQSKLNSADSVAVFDINADAMRQLQAETTSSGA SLVLASSAFDASKDADTVITVLPEPQHVQAVYSSILTSSLPARDRVFIDTSTIDPSTSRQVAEKVAAARQGTFVD APMSGGVVGATAGTLTFMLGCDDAAYLSRVEPVLLRMGRKVLHCGRQGTGLSAKLANNYLLALSNIATAEAMNLG IRWGLDPKTLAGVINVSTGRCWPSEVNNPVRGVAESAASSRDYRGGFGVSLMRKDLRLAMVAAEEAGANMVLADT ALSVYEGAEKREDCKGRDFSVVYRYIGGKE* |
| Coding | >Ophun1|1803 ATGAGACTCGCCTGCCTGCGCCTGGCTGCCTCGGTCCAGAGGCGAGGCTTCGCCAGCACGGCGCGTCGTCTCGAC AGTTATGCCTTTGTCGGGCTTGGCCAGATGGGATTCCAGATGGTCAAAAACCTTCAGTCGAAGCTCAACTCAGCT GACAGCGTTGCCGTCTTCGACATCAATGCCGACGCCATGAGACAGCTGCAGGCCGAAACCACTTCTAGCGGCGCC TCTCTCGTGCTCGCGTCGAGCGCCTTCGACGCCTCCAAAGACGCTGATACCGTCATCACTGTGCTCCCCGAGCCA CAGCACGTCCAAGCCGTCTACTCGTCCATCCTCACTAGCTCGCTTCCCGCCAGGGACCGCGTCTTCATCGATACA TCCACCATCGATCCCTCGACATCGCGCCAGGTCGCTGAGAAGGTGGCAGCCGCGCGCCAGGGCACATTCGTCGAT GCGCCCATGTCCGGTGGTGTCGTTGGCGCCACGGCCGGCACGCTGACTTTTATGCTCGGCTGCGACGACGCTGCC TACCTATCCCGCGTCGAGCCTGTGCTACTCCGCATGGGCCGCAAGGTCCTTCACTGCGGCCGTCAGGGCACCGGC CTATCCGCCAAGCTGGCCAACAACTACCTCCTAGCCCTCAGCAACATCGCCACCGCCGAGGCCATGAACCTGGGT ATCCGCTGGGGCCTAGACCCCAAGACGCTCGCCGGCGTCATCAACGTCAGCACCGGCCGCTGCTGGCCCAGCGAG GTCAACAACCCAGTCCGTGGCGTGGCCGAGTCCGCCGCCTCCTCCCGCGACTACCGCGGCGGCTTCGGCGTCTCC CTCATGCGCAAGGACCTGCGGCTCGCCATGGTGGCTGCCGAAGAGGCCGGGGCCAACATGGTGCTCGCCGACACG GCGCTCAGCGTCTACGAGGGTGCCGAGAAGCGGGAGGACTGCAAGGGCCGTGACTTTTCGGTCGTCTATCGCTAC ATTGGCGGCAAGGAGTGA |
| Transcript | >Ophun1|1803 ATGAGACTCGCCTGCCTGCGCCTGGCTGCCTCGGTCCAGAGGCGAGGCTTCGCCAGCACGGCGCGTCGTCTCGAC AGTTATGCCTTTGTCGGGCTTGGCCAGATGGGATTCCAGATGGTCAAAAACCTTCAGTCGAAGCTCAACTCAGCT GACAGCGTTGCCGTCTTCGACATCAATGCCGACGCCATGAGACAGCTGCAGGCCGAAACCACTTCTAGCGGCGCC TCTCTCGTGCTCGCGTCGAGCGCCTTCGACGCCTCCAAAGACGCTGATACCGTCATCACTGTGCTCCCCGAGCCA CAGCACGTCCAAGCCGTCTACTCGTCCATCCTCACTAGCTCGCTTCCCGCCAGGGACCGCGTCTTCATCGATACA TCCACCATCGATCCCTCGACATCGCGCCAGGTCGCTGAGAAGGTGGCAGCCGCGCGCCAGGGCACATTCGTCGAT GCGCCCATGTCCGGTGGTGTCGTTGGCGCCACGGCCGGCACGCTGACTTTTATGCTCGGCTGCGACGACGCTGCC TACCTATCCCGCGTCGAGCCTGTGCTACTCCGCATGGGCCGCAAGGTCCTTCACTGCGGCCGTCAGGGCACCGGC CTATCCGCCAAGCTGGCCAACAACTACCTCCTAGCCCTCAGCAACATCGCCACCGCCGAGGCCATGAACCTGGGT ATCCGCTGGGGCCTAGACCCCAAGACGCTCGCCGGCGTCATCAACGTCAGCACCGGCCGCTGCTGGCCCAGCGAG GTCAACAACCCAGTCCGTGGCGTGGCCGAGTCCGCCGCCTCCTCCCGCGACTACCGCGGCGGCTTCGGCGTCTCC CTCATGCGCAAGGACCTGCGGCTCGCCATGGTGGCTGCCGAAGAGGCCGGGGCCAACATGGTGCTCGCCGACACG GCGCTCAGCGTCTACGAGGGTGCCGAGAAGCGGGAGGACTGCAAGGGCCGTGACTTTTCGGTCGTCTATCGCTAC ATTGGCGGCAAGGAGTGA |
| Gene | >Ophun1|1803 ATGAGACTCGCCTGCCTGCGCCTGGCTGCCTCGGTCCAGAGGCGAGGCTTCGCCAGCACGGCGCGTCGTCTCGAC AGTTATGCCTTTGTCGGGCTTGGCCAGATGGTACGCGCAATAACTGCCCGCCTCCAGACCTGCTCGTCGTCAGGC TTATGTTGCTGACACCCGACAAGGGATTCCAGATGGTCAAAAACCTTCAGTCGAAGCTCAACTCAGCTGACAGCG TTGCCGTCTTCGACATCAATGCCGACGCCATGAGACAGCTGCAGGCCGAAACCACTTCTAGCGGCGCCTCTCTCG TGCTCGCGTCGAGCGCCTTCGACGCCTCCAAAGACGCTGTAGGTTCTCGCCTCGCCCTCCGAGCCCTCTCAGCCC AGGTGTTACCATCATGATGAGCAATTGAACTATCCATTCTATGATCTAAGTCAGGGCCAGCTTGCGTCCTGCATT CTGGCCTTACCCATGATTATCGCTTCTTAGCCAATCCTCTGACAACTCATGTCCCGAGCATCCACTACACAACCC TCGAAGCAGGCATCGAGCTGTGCTAACTCTCATCTCGCCAGGATACCGTCATCACTGTGCTCCCCGAGCCACAGC ACGTCCAAGCCGTCTACTCGTCCATCCTCACTAGCTCGCTTCCCGCCAGGGACCGCGTCTTCATCGATACATCCA CCATCGATCCCTCGACATCGCGCCAGGTCGCTGAGAAGGTGGCAGCCGCGCGCCAGGGCACATTCGTCGATGCGC CCATGTCCGGTGGTGTCGTTGGCGCCACGGCCGGCACGCTGACTTTTATGCTCGGCTGCGACGACGCTGCCTACC TATCCCGCGTCGAGCCTGTGCTACTCCGCATGGGCCGCAAGGTCCTTCACTGCGGCCGTCAGGGCACCGGCCTAT CCGCCAAGCTGGCCAACAACTACCTCCTAGCCCTCAGCAACATCGCCACCGCCGAGGCCATGAACCTGGGTATCC GCTGGGGCCTAGACCCCAAGACGCTCGCCGGCGTCATCAACGTCAGCACCGGCCGCTGCTGGCCCAGCGAGGTCA ACAACCCAGTCCGTGGCGTGGCCGAGTCCGCCGCCTCCTCCCGCGACTACCGCGGCGGCTTCGGCGTCTCCCTCA TGCGCAAGGACCTGCGGCTCGCCATGGTGGCTGCCGAAGAGGCCGGGGCCAACATGGTGCTCGCCGACACGGCGC TCAGCGTCTACGAGGGTGCCGAGAAGCGGGAGGACTGCAAGGGCCGTGACTTTTCGGTCGTCTATCGCTACATTG GCGGCAAGGAGTGA |