© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Ophun1|1778 |
| Gene name | |
| Location | Contig_1781:24..932 |
| Strand | - |
| Gene length (bp) | 908 |
| Transcript length (bp) | 804 |
| Coding sequence length (bp) | 804 |
| Protein length (aa) | 268 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00106 | adh_short | short chain dehydrogenase | 7.3E-16 | 56 | 245 |
| PF13561 | adh_short_C2 | Enoyl-(Acyl carrier protein) reductase | 2.5E-08 | 64 | 198 |
| PF08659 | KR | KR domain | 3.1E-08 | 58 | 234 |
| PF01370 | Epimerase | NAD dependent epimerase/dehydratase family | 1.4E-07 | 58 | 242 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O13822|YEE6_SCHPO | Uncharacterized oxidoreductase C19A8.06 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC19A8.06 PE=3 SV=1 | 1 | 264 | 5.0E-67 |
| sp|P53878|YNS1_YEAST | Uncharacterized oxidoreductase YNL181W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YNL181W PE=1 SV=2 | 37 | 244 | 9.0E-47 |
| sp|Q8CEE7|RDH13_MOUSE | Retinol dehydrogenase 13 OS=Mus musculus GN=Rdh13 PE=1 SV=1 | 24 | 246 | 5.0E-20 |
| sp|Q8NBN7|RDH13_HUMAN | Retinol dehydrogenase 13 OS=Homo sapiens GN=RDH13 PE=1 SV=2 | 24 | 246 | 7.0E-17 |
| sp|Q5F389|WWOX_CHICK | WW domain-containing oxidoreductase OS=Gallus gallus GN=WWOX PE=2 SV=2 | 51 | 244 | 5.0E-16 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O13822|YEE6_SCHPO | Uncharacterized oxidoreductase C19A8.06 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC19A8.06 PE=3 SV=1 | 1 | 264 | 5.0E-67 |
| sp|P53878|YNS1_YEAST | Uncharacterized oxidoreductase YNL181W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YNL181W PE=1 SV=2 | 37 | 244 | 9.0E-47 |
| sp|Q8CEE7|RDH13_MOUSE | Retinol dehydrogenase 13 OS=Mus musculus GN=Rdh13 PE=1 SV=1 | 24 | 246 | 5.0E-20 |
| sp|Q8NBN7|RDH13_HUMAN | Retinol dehydrogenase 13 OS=Homo sapiens GN=RDH13 PE=1 SV=2 | 24 | 246 | 7.0E-17 |
| sp|Q5F389|WWOX_CHICK | WW domain-containing oxidoreductase OS=Gallus gallus GN=WWOX PE=2 SV=2 | 51 | 244 | 5.0E-16 |
| sp|Q9ERI6|RDH14_MOUSE | Retinol dehydrogenase 14 OS=Mus musculus GN=Rdh14 PE=1 SV=1 | 53 | 246 | 7.0E-16 |
| sp|Q9HBH5|RDH14_HUMAN | Retinol dehydrogenase 14 OS=Homo sapiens GN=RDH14 PE=1 SV=1 | 53 | 246 | 1.0E-15 |
| sp|P35320|OXIR_STRLI | Probable oxidoreductase OS=Streptomyces lividans PE=3 SV=1 | 53 | 242 | 4.0E-15 |
| sp|Q8N5I4|DHRSX_HUMAN | Dehydrogenase/reductase SDR family member on chromosome X OS=Homo sapiens GN=DHRSX PE=2 SV=2 | 56 | 246 | 1.0E-14 |
| sp|Q96NR8|RDH12_HUMAN | Retinol dehydrogenase 12 OS=Homo sapiens GN=RDH12 PE=1 SV=3 | 37 | 246 | 1.0E-14 |
| sp|Q8BYK4|RDH12_MOUSE | Retinol dehydrogenase 12 OS=Mus musculus GN=Rdh12 PE=2 SV=1 | 27 | 246 | 7.0E-14 |
| sp|Q8TC12|RDH11_HUMAN | Retinol dehydrogenase 11 OS=Homo sapiens GN=RDH11 PE=1 SV=2 | 55 | 246 | 7.0E-14 |
| sp|Q6UX07|DHR13_HUMAN | Dehydrogenase/reductase SDR family member 13 OS=Homo sapiens GN=DHRS13 PE=2 SV=1 | 53 | 246 | 8.0E-14 |
| sp|Q9QYF1|RDH11_MOUSE | Retinol dehydrogenase 11 OS=Mus musculus GN=Rdh11 PE=1 SV=2 | 55 | 246 | 1.0E-13 |
| sp|P59837|RDH12_BOVIN | Retinol dehydrogenase 12 OS=Bos taurus GN=RDH12 PE=2 SV=1 | 37 | 246 | 4.0E-13 |
| sp|Q03326|OXIR_STRAT | Probable oxidoreductase OS=Streptomyces antibioticus PE=3 SV=1 | 53 | 242 | 5.0E-13 |
| sp|Q17QU7|DHR13_BOVIN | Dehydrogenase/reductase SDR family member 13 OS=Bos taurus GN=DHRS13 PE=2 SV=1 | 53 | 246 | 1.0E-12 |
| sp|Q9VLU5|WWOX_DROME | WW domain-containing oxidoreductase OS=Drosophila melanogaster GN=Wwox PE=2 SV=1 | 51 | 237 | 4.0E-12 |
| sp|Q5SS80|DHR13_MOUSE | Dehydrogenase/reductase SDR family member 13 OS=Mus musculus GN=Dhrs13 PE=1 SV=1 | 53 | 246 | 1.0E-11 |
| sp|Q6RVV4|TIC32_PEA | Short-chain dehydrogenase TIC 32, chloroplastic OS=Pisum sativum GN=TIC32 PE=1 SV=1 | 55 | 244 | 1.0E-11 |
| sp|Q9NZC7|WWOX_HUMAN | WW domain-containing oxidoreductase OS=Homo sapiens GN=WWOX PE=1 SV=1 | 51 | 244 | 2.0E-11 |
| sp|Q5R9W5|WWOX_PONAB | WW domain-containing oxidoreductase OS=Pongo abelii GN=WWOX PE=2 SV=1 | 51 | 244 | 3.0E-11 |
| sp|Q91WL8|WWOX_MOUSE | WW domain-containing oxidoreductase OS=Mus musculus GN=Wwox PE=1 SV=1 | 51 | 244 | 4.0E-11 |
| sp|Q8VBZ0|DHRSX_MOUSE | Dehydrogenase/reductase SDR family member on chromosome X homolog OS=Mus musculus GN=Dhrsx PE=1 SV=2 | 52 | 250 | 1.0E-10 |
| sp|A2RVM0|TIC32_ARATH | Short-chain dehydrogenase TIC 32, chloroplastic OS=Arabidopsis thaliana GN=TIC32 PE=2 SV=1 | 55 | 244 | 2.0E-09 |
| sp|O74959|YJCD_SCHPO | Uncharacterized oxidoreductase C736.13 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC736.13 PE=3 SV=1 | 40 | 247 | 2.0E-09 |
| sp|Q803A8|WWOX_DANRE | WW domain-containing oxidoreductase OS=Danio rerio GN=wwox PE=2 SV=1 | 53 | 244 | 1.0E-07 |
| sp|A0PJE2|DHR12_HUMAN | Dehydrogenase/reductase SDR family member 12 OS=Homo sapiens GN=DHRS12 PE=2 SV=2 | 47 | 230 | 4.0E-07 |
| sp|Q53877|DNRU_STRS5 | Putative daunorubicin C-13 ketoreductase DnrU OS=Streptomyces sp. (strain C5) PE=3 SV=1 | 53 | 176 | 2.0E-06 |
| sp|Q9ZAU1|DNRU_STRPE | Putative daunorubicin C-13 ketoreductase DnrU OS=Streptomyces peucetius GN=dnrU PE=3 SV=1 | 53 | 176 | 3.0E-06 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 31 | 0.5 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophun1|1778 MPLPFIFHVVNHGPPDWIREHRWPIFYISLAIASLVSLKRWTAGRTNDSERPLHGKVVLLTGGTSGVGAQTAREL AARGAQIVLLTREPPSDPFVAEYVQDLRDATGNLLVYAEQVDLASLHSVRAFATKWIDNAPPRRLDMIVLCAAAV TPPGASRRETDEGVEHTWMVNFVANFHLLAILSPAIKAQPFDRDVRIVVATCSSYKASPSLREPVSAENWSPTTA YARSKLALTVFALAFQKHLDAYKRPDQLPMNARVILVDPVSV* |
| Coding | >Ophun1|1778 ATGCCGCTCCCCTTCATCTTCCACGTCGTCAACCACGGCCCCCCCGACTGGATCCGAGAACACCGCTGGCCCATC TTCTACATCTCGCTGGCCATCGCCTCGCTCGTCTCCCTCAAGCGCTGGACCGCCGGCCGGACCAACGACTCGGAA CGGCCTCTACATGGAAAGGTGGTGCTGTTGACGGGGGGCACGTCGGGAGTGGGCGCGCAGACGGCGAGGGAGTTG GCTGCCAGGGGAGCGCAGATTGTGCTGCTGACGAGAGAGCCGCCTTCTGATCCGTTCGTTGCCGAGTACGTGCAG GACTTGCGGGATGCTACGGGGAATCTACTCGTCTATGCTGAGCAGGTTGATCTTGCGAGCTTGCATAGCGTTCGG GCTTTTGCGACGAAGTGGATTGATAATGCGCCGCCTCGTCGTCTTGATATGATTGTCTTGTGTGCCGCTGCTGTT ACGCCGCCTGGGGCATCGAGACGGGAGACGGATGAGGGCGTTGAGCATACCTGGATGGTCAACTTTGTCGCCAAC TTTCACCTCTTGGCTATTCTGAGCCCGGCTATCAAGGCTCAGCCGTTTGATCGCGACGTGCGCATCGTCGTGGCT ACTTGTTCTTCTTACAAGGCGTCTCCGTCGCTGCGAGAGCCCGTCTCGGCTGAGAACTGGAGTCCTACCACGGCC TATGCGCGCAGCAAGCTCGCCCTCACCGTCTTTGCGCTGGCTTTCCAGAAGCATCTCGATGCGTACAAGCGGCCG GATCAGCTTCCCATGAACGCGCGCGTCATCCTCGTCGACCCGGTCTCCGTATAG |
| Transcript | >Ophun1|1778 ATGCCGCTCCCCTTCATCTTCCACGTCGTCAACCACGGCCCCCCCGACTGGATCCGAGAACACCGCTGGCCCATC TTCTACATCTCGCTGGCCATCGCCTCGCTCGTCTCCCTCAAGCGCTGGACCGCCGGCCGGACCAACGACTCGGAA CGGCCTCTACATGGAAAGGTGGTGCTGTTGACGGGGGGCACGTCGGGAGTGGGCGCGCAGACGGCGAGGGAGTTG GCTGCCAGGGGAGCGCAGATTGTGCTGCTGACGAGAGAGCCGCCTTCTGATCCGTTCGTTGCCGAGTACGTGCAG GACTTGCGGGATGCTACGGGGAATCTACTCGTCTATGCTGAGCAGGTTGATCTTGCGAGCTTGCATAGCGTTCGG GCTTTTGCGACGAAGTGGATTGATAATGCGCCGCCTCGTCGTCTTGATATGATTGTCTTGTGTGCCGCTGCTGTT ACGCCGCCTGGGGCATCGAGACGGGAGACGGATGAGGGCGTTGAGCATACCTGGATGGTCAACTTTGTCGCCAAC TTTCACCTCTTGGCTATTCTGAGCCCGGCTATCAAGGCTCAGCCGTTTGATCGCGACGTGCGCATCGTCGTGGCT ACTTGTTCTTCTTACAAGGCGTCTCCGTCGCTGCGAGAGCCCGTCTCGGCTGAGAACTGGAGTCCTACCACGGCC TATGCGCGCAGCAAGCTCGCCCTCACCGTCTTTGCGCTGGCTTTCCAGAAGCATCTCGATGCGTACAAGCGGCCG GATCAGCTTCCCATGAACGCGCGCGTCATCCTCGTCGACCCGGTCTCCGTATAG |
| Gene | >Ophun1|1778 ATGCCGCTCCCCTTCATCTTCCACGTCGTCAACCACGGCCCCCCCGACTGGATCCGAGAACACCGCTGGCCCATC TTCTACATCTCGCTGGCCATCGCCTCGCTCGTCTCCCTCAAGCGCTGGACCGCCGGCCGGACCAACGACTCGGAA CGGCCTCTACATGGAAAGGTGGTGCTGTTGACGGGGGGCACGTCGGGAGTGGGCGCGCAGACGGCGAGGGAGTTG GCTGCCAGGGGAGCGCAGATTGTGCTGCTGACGAGAGAGCCGCCTTCTGATCCGTTCGTTGCCGAGTACGTGCAG GACTTGCGGGATGCTACGGGGAATCTACTCGTCTATGCTGAGCAGGTTGATCTTGCGAGCTTGCATAGCGTTCGG GCTTTTGCGACGAAGTGGATTGATAATGCGCCGCCTCGTCGTCTTGATATGATTGTCTTGTGTGCCGCTGCTGTT ACGCCGCCTGGGGCATCGAGACGGGAGACGGATGAGGGCGTTGAGCATACCTGGATGGTCAACTTTGTCGCCAAC TTTCACCTCTTGGCTATTCTGAGCCCGGCTATCAAGGCTCAGCCGTTTGATCGCGACGTGCGCATCGTCGTGGCT ACTTGTTCTTCTTACAAGGCGTCTCCGTCGCTGCGAGAGCCCGTCTCGGCTGAGAACTGGAGTCCTACCACGGCC TATGCGCGCAGCAAGCTCGCCCTCACCGTCTTTGCGCTGGCTTTCCAGAAGCATCTCGATGCGTACAAGCGGCCG GATCAGCTTCCCATGAACGCGCGCGTCATCCTCGTCGACCCGGGTCTGAGCCGGACGCCCGGCATGCGGACTTGG CTCACGCGCGGGTCGCTTTGGGGGTTGGTGTTGTATGTGGTGTTTTACGCGGTGCCGTGGATGCTGCTCAAGTCT CCGTATAG |