Fungal Genomics

at Utrecht University

General Properties

Protein IDOphun1|1770
Gene name
LocationContig_178:11269..11593
Strand+
Gene length (bp)324
Transcript length (bp)273
Coding sequence length (bp)273
Protein length (aa) 91

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF04418 DUF543 Domain of unknown function (DUF543) 8.9E-31 11 76

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q7RYI0|MIC10_NEUCR MICOS complex subunit mic10 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=mic10 PE=3 SV=1 2 88 1.0E-47
sp|Q9HFF0|MIC10_SCHPO MICOS complex subunit mic10 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mic10 PE=3 SV=1 18 79 1.0E-17
sp|Q751T2|MIC10_ASHGO MICOS complex subunit MIC10 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=MIC10 PE=3 SV=1 13 90 3.0E-17
sp|Q96VH5|MIC10_YEAST MICOS complex subunit MIC10 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MIC10 PE=1 SV=1 19 89 1.0E-16
sp|Q5TGZ0|MIC10_HUMAN MICOS complex subunit MIC10 OS=Homo sapiens GN=MINOS1 PE=1 SV=1 17 79 7.0E-15
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[Show less]
Swissprot ID Swissprot Description Start End E-value
sp|Q7RYI0|MIC10_NEUCR MICOS complex subunit mic10 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=mic10 PE=3 SV=1 2 88 1.0E-47
sp|Q9HFF0|MIC10_SCHPO MICOS complex subunit mic10 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mic10 PE=3 SV=1 18 79 1.0E-17
sp|Q751T2|MIC10_ASHGO MICOS complex subunit MIC10 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=MIC10 PE=3 SV=1 13 90 3.0E-17
sp|Q96VH5|MIC10_YEAST MICOS complex subunit MIC10 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MIC10 PE=1 SV=1 19 89 1.0E-16
sp|Q5TGZ0|MIC10_HUMAN MICOS complex subunit MIC10 OS=Homo sapiens GN=MINOS1 PE=1 SV=1 17 79 7.0E-15
sp|Q7TNS2|MIC10_MOUSE MICOS complex subunit Mic10 OS=Mus musculus GN=Minos1 PE=1 SV=1 17 79 2.0E-14
sp|B2RYW8|MIC10_RAT MICOS complex subunit Mic10 OS=Rattus norvegicus GN=Minos1 PE=3 SV=1 17 79 2.0E-13
sp|Q9N4K0|MIC10_CAEEL MICOS complex subunit Mic10 OS=Caenorhabditis elegans GN=F54A3.5 PE=3 SV=2 18 78 3.0E-09
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GO

GO Term Description Terminal node
GO:0005743 mitochondrial inner membrane Yes
GO:0061617 MICOS complex Yes
GO:0098796 membrane protein complex No
GO:0031966 mitochondrial membrane No
GO:0031090 organelle membrane No
GO:0098798 mitochondrial protein-containing complex No
GO:0019866 organelle inner membrane No
GO:0005575 cellular_component No
GO:0110165 cellular anatomical entity No
GO:0016020 membrane No
GO:0098800 inner mitochondrial membrane protein complex No
GO:0032991 protein-containing complex No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 70 0.5

Transmembrane Domains

Domain # Start End Length
1 30 52 22

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophun1|1770
MSETVVPPPPSAVSRPVSEALLNEKWDRCLSNLLVKSTLGLGFGVVFSVLLFKRRAWPAFVGVGFGAGRAYEECN
FSLKQAARDLRKQKA*
Coding >Ophun1|1770
ATGTCCGAGACCGTTGTCCCTCCGCCCCCGAGCGCCGTGTCGCGGCCCGTGAGCGAGGCGCTGCTCAACGAAAAG
TGGGATCGATGTCTCTCCAACCTCCTCGTCAAGTCGACACTCGGCCTCGGATTCGGCGTCGTCTTCTCCGTCCTG
TTGTTCAAGCGAAGAGCGTGGCCCGCCTTTGTTGGCGTCGGATTCGGTGCCGGACGAGCATACGAGGAGTGCAAC
TTTAGCCTGAAGCAGGCTGCGAGGGATCTGAGGAAGCAGAAGGCGTGA
Transcript >Ophun1|1770
ATGTCCGAGACCGTTGTCCCTCCGCCCCCGAGCGCCGTGTCGCGGCCCGTGAGCGAGGCGCTGCTCAACGAAAAG
TGGGATCGATGTCTCTCCAACCTCCTCGTCAAGTCGACACTCGGCCTCGGATTCGGCGTCGTCTTCTCCGTCCTG
TTGTTCAAGCGAAGAGCGTGGCCCGCCTTTGTTGGCGTCGGATTCGGTGCCGGACGAGCATACGAGGAGTGCAAC
TTTAGCCTGAAGCAGGCTGCGAGGGATCTGAGGAAGCAGAAGGCGTGA
Gene >Ophun1|1770
ATGTCCGAGACCGTTGTCCCTCCGCCCCCGAGCGCCGTGTCGCGGCCCGTGAGCGAGGCGCTGCTCAACGAAAAG
GTGCGTCGACGGGGCTCTCCGCAAGCGCAGCTGCTGACTCGCTACCAACAGTGGGATCGATGTCTCTCCAACCTC
CTCGTCAAGTCGACACTCGGCCTCGGATTCGGCGTCGTCTTCTCCGTCCTGTTGTTCAAGCGAAGAGCGTGGCCC
GCCTTTGTTGGCGTCGGATTCGGTGCCGGACGAGCATACGAGGAGTGCAACTTTAGCCTGAAGCAGGCTGCGAGG
GATCTGAGGAAGCAGAAGGCGTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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