© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophun1|1591 |
| Gene name | |
| Location | Contig_168:25809..27160 |
| Strand | - |
| Gene length (bp) | 1351 |
| Transcript length (bp) | 1296 |
| Coding sequence length (bp) | 1296 |
| Protein length (aa) | 432 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF03388 | Lectin_leg-like | Legume-like lectin family | 9.5E-24 | 57 | 232 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P43555|EMP47_YEAST | Protein EMP47 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=EMP47 PE=1 SV=1 | 40 | 231 | 7.0E-17 |
| sp|Q9D0F3|LMAN1_MOUSE | Protein ERGIC-53 OS=Mus musculus GN=Lman1 PE=1 SV=1 | 65 | 431 | 7.0E-12 |
| sp|Q62902|LMAN1_RAT | Protein ERGIC-53 OS=Rattus norvegicus GN=Lman1 PE=1 SV=1 | 65 | 431 | 7.0E-12 |
| sp|P49257|LMAN1_HUMAN | Protein ERGIC-53 OS=Homo sapiens GN=LMAN1 PE=1 SV=2 | 65 | 431 | 6.0E-09 |
| sp|Q12396|EMP46_YEAST | Protein EMP46 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=EMP46 PE=1 SV=1 | 59 | 231 | 1.0E-08 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P43555|EMP47_YEAST | Protein EMP47 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=EMP47 PE=1 SV=1 | 40 | 231 | 7.0E-17 |
| sp|Q9D0F3|LMAN1_MOUSE | Protein ERGIC-53 OS=Mus musculus GN=Lman1 PE=1 SV=1 | 65 | 431 | 7.0E-12 |
| sp|Q62902|LMAN1_RAT | Protein ERGIC-53 OS=Rattus norvegicus GN=Lman1 PE=1 SV=1 | 65 | 431 | 7.0E-12 |
| sp|P49257|LMAN1_HUMAN | Protein ERGIC-53 OS=Homo sapiens GN=LMAN1 PE=1 SV=2 | 65 | 431 | 6.0E-09 |
| sp|Q12396|EMP46_YEAST | Protein EMP46 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=EMP46 PE=1 SV=1 | 59 | 231 | 1.0E-08 |
| sp|Q9TU32|LMAN1_CHLAE | Protein ERGIC-53 OS=Chlorocebus aethiops GN=LMAN1 PE=2 SV=1 | 65 | 233 | 3.0E-08 |
| sp|Q2HJD1|LMA2L_BOVIN | VIP36-like protein OS=Bos taurus GN=LMAN2L PE=2 SV=1 | 56 | 262 | 2.0E-07 |
| sp|Q5FB95|LMA1L_RAT | Protein ERGIC-53-like OS=Rattus norvegicus GN=Lman1l PE=1 SV=1 | 69 | 253 | 3.0E-07 |
| sp|Q9H0V9|LMA2L_HUMAN | VIP36-like protein OS=Homo sapiens GN=LMAN2L PE=1 SV=1 | 56 | 262 | 8.0E-07 |
| sp|Q5RCF0|LMA2L_PONAB | VIP36-like protein OS=Pongo abelii GN=LMAN2L PE=3 SV=1 | 56 | 262 | 1.0E-06 |
| sp|Q9HAT1|LMA1L_HUMAN | Protein ERGIC-53-like OS=Homo sapiens GN=LMAN1L PE=2 SV=2 | 58 | 253 | 1.0E-06 |
| sp|P59481|LMA2L_MOUSE | VIP36-like protein OS=Mus musculus GN=Lman2l PE=1 SV=1 | 56 | 231 | 4.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016020 | membrane | Yes |
| GO:0110165 | cellular anatomical entity | No |
| GO:0005575 | cellular_component | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 20 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 401 | 419 | 18 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophun1|1591 MRAPAFCAALAALLSATTAFDHIIQDLSFGQTGRPDGNSRVPNYILSGHPYQPEQLSNKIILTPVAPGNQRGALW AEKPLSRSYFSAHVDFRANGPERGGGNLNVWLVHGGSSVVGSHSIYTVGKFDGLGLVVDAYGGSGGMIRGFLNDG SVDYSQQHDIDRLAFGHCQFSYRNLGRPTTLSLFQTQHALRVEVDGHLCFETDHASIPSGNFLGVTAATPDTPDS FEIFAMVVSSDAPDNHEHDSSHFGQQKQPGPPAAAAAPNPPHHDEHQRYQQFKSPSDEPADHFATSAAQFRDLHN RLQSLTHHLSSISAELANYDHYNEQRNDQVTKALDALRSRLPAGSDLVARVQDLEKEVRAMRNDMNKGLASHHDS FQDYLSDHHDSLAQTMMHSMPGHGKIIFVIVASQVVLAVGYVLYKRRKASSPKKYL* |
| Coding | >Ophun1|1591 ATGCGAGCCCCGGCCTTTTGCGCCGCGCTGGCCGCCCTCTTGTCCGCGACGACGGCCTTTGACCACATCATCCAA GACCTCAGCTTCGGCCAGACAGGCCGTCCCGACGGCAACAGCCGAGTGCCCAACTACATCCTCTCAGGCCACCCC TACCAACCAGAGCAGCTCTCCAACAAAATCATCCTCACCCCCGTCGCGCCAGGGAACCAACGCGGCGCCCTCTGG GCCGAAAAGCCGCTCTCACGATCCTACTTCTCCGCCCACGTCGACTTCCGAGCCAACGGCCCCGAGCGCGGCGGC GGCAACCTCAACGTCTGGCTCGTCCACGGAGGCAGCTCCGTCGTCGGCTCCCACAGCATCTACACCGTCGGCAAG TTCGATGGCTTGGGTCTCGTTGTCGACGCTTACGGCGGTTCCGGAGGCATGATTCGCGGCTTTCTCAACGATGGA TCTGTCGATTACTCGCAGCAGCATGACATCGATCGCCTCGCCTTTGGCCATTGCCAGTTCTCGTATCGAAATCTC GGCAGACCTACCACGCTCAGCCTGTTCCAGACACAGCACGCTCTCCGCGTCGAGGTCGATGGACACCTCTGCTTC GAGACGGACCACGCCAGCATTCCGTCGGGCAACTTCCTCGGCGTCACAGCCGCCACCCCCGACACGCCCGACTCG TTCGAGATCTTCGCCATGGTCGTCTCGTCCGACGCTCCAGACAATCACGAACACGACAGCTCCCATTTCGGCCAG CAGAAGCAACCCGGTCCCCCCGCCGCCGCCGCAGCCCCCAACCCTCCCCATCACGATGAGCACCAGCGTTACCAG CAGTTCAAGTCGCCGTCCGACGAACCAGCCGATCACTTCGCCACGTCAGCCGCCCAGTTCCGCGACCTGCACAAC CGCCTCCAGTCTCTCACCCACCACCTATCCTCCATCTCGGCCGAGCTAGCCAACTACGACCACTACAACGAACAG CGCAACGACCAGGTGACCAAGGCGCTCGATGCCCTCCGCTCGCGTCTCCCCGCCGGCTCAGACCTCGTCGCGCGC GTCCAGGATCTGGAGAAGGAAGTGCGGGCGATGCGCAACGATATGAACAAGGGTCTGGCGTCGCATCACGACTCT TTCCAGGATTACCTATCGGATCATCACGACTCGCTCGCCCAGACCATGATGCACTCCATGCCCGGCCACGGAAAG ATCATCTTTGTCATTGTCGCGTCGCAGGTTGTGCTCGCCGTCGGATACGTTTTGTATAAGCGACGCAAGGCGAGC AGTCCCAAGAAGTATCTGTGA |
| Transcript | >Ophun1|1591 ATGCGAGCCCCGGCCTTTTGCGCCGCGCTGGCCGCCCTCTTGTCCGCGACGACGGCCTTTGACCACATCATCCAA GACCTCAGCTTCGGCCAGACAGGCCGTCCCGACGGCAACAGCCGAGTGCCCAACTACATCCTCTCAGGCCACCCC TACCAACCAGAGCAGCTCTCCAACAAAATCATCCTCACCCCCGTCGCGCCAGGGAACCAACGCGGCGCCCTCTGG GCCGAAAAGCCGCTCTCACGATCCTACTTCTCCGCCCACGTCGACTTCCGAGCCAACGGCCCCGAGCGCGGCGGC GGCAACCTCAACGTCTGGCTCGTCCACGGAGGCAGCTCCGTCGTCGGCTCCCACAGCATCTACACCGTCGGCAAG TTCGATGGCTTGGGTCTCGTTGTCGACGCTTACGGCGGTTCCGGAGGCATGATTCGCGGCTTTCTCAACGATGGA TCTGTCGATTACTCGCAGCAGCATGACATCGATCGCCTCGCCTTTGGCCATTGCCAGTTCTCGTATCGAAATCTC GGCAGACCTACCACGCTCAGCCTGTTCCAGACACAGCACGCTCTCCGCGTCGAGGTCGATGGACACCTCTGCTTC GAGACGGACCACGCCAGCATTCCGTCGGGCAACTTCCTCGGCGTCACAGCCGCCACCCCCGACACGCCCGACTCG TTCGAGATCTTCGCCATGGTCGTCTCGTCCGACGCTCCAGACAATCACGAACACGACAGCTCCCATTTCGGCCAG CAGAAGCAACCCGGTCCCCCCGCCGCCGCCGCAGCCCCCAACCCTCCCCATCACGATGAGCACCAGCGTTACCAG CAGTTCAAGTCGCCGTCCGACGAACCAGCCGATCACTTCGCCACGTCAGCCGCCCAGTTCCGCGACCTGCACAAC CGCCTCCAGTCTCTCACCCACCACCTATCCTCCATCTCGGCCGAGCTAGCCAACTACGACCACTACAACGAACAG CGCAACGACCAGGTGACCAAGGCGCTCGATGCCCTCCGCTCGCGTCTCCCCGCCGGCTCAGACCTCGTCGCGCGC GTCCAGGATCTGGAGAAGGAAGTGCGGGCGATGCGCAACGATATGAACAAGGGTCTGGCGTCGCATCACGACTCT TTCCAGGATTACCTATCGGATCATCACGACTCGCTCGCCCAGACCATGATGCACTCCATGCCCGGCCACGGAAAG ATCATCTTTGTCATTGTCGCGTCGCAGGTTGTGCTCGCCGTCGGATACGTTTTGTATAAGCGACGCAAGGCGAGC AGTCCCAAGAAGTATCTGTGA |
| Gene | >Ophun1|1591 ATGCGAGCCCCGGCCTTTTGCGCCGCGCTGGCCGCCCTCTTGTCCGCGACGACGGCCTTTGACCACATCATCCAA GACCTCAGCTTCGGCCAGACAGGCCGGTCCGTCATGCCTCTTCTTCATTGGCTTCATCTCTGACAAAGACAACAG CATCAGTCCCGACGGCAACAGCCGAGTGCCCAACTACATCCTCTCAGGCCACCCCTACCAACCAGAGCAGCTCTC CAACAAAATCATCCTCACCCCCGTCGCGCCAGGGAACCAACGCGGCGCCCTCTGGGCCGAAAAGCCGCTCTCACG ATCCTACTTCTCCGCCCACGTCGACTTCCGAGCCAACGGCCCCGAGCGCGGCGGCGGCAACCTCAACGTCTGGCT CGTCCACGGAGGCAGCTCCGTCGTCGGCTCCCACAGCATCTACACCGTCGGCAAGTTCGATGGCTTGGGTCTCGT TGTCGACGCTTACGGCGGTTCCGGAGGCATGATTCGCGGCTTTCTCAACGATGGATCTGTCGATTACTCGCAGCA GCATGACATCGATCGCCTCGCCTTTGGCCATTGCCAGTTCTCGTATCGAAATCTCGGCAGACCTACCACGCTCAG CCTGTTCCAGACACAGCACGCTCTCCGCGTCGAGGTCGATGGACACCTCTGCTTCGAGACGGACCACGCCAGCAT TCCGTCGGGCAACTTCCTCGGCGTCACAGCCGCCACCCCCGACACGCCCGACTCGTTCGAGATCTTCGCCATGGT CGTCTCGTCCGACGCTCCAGACAATCACGAACACGACAGCTCCCATTTCGGCCAGCAGAAGCAACCCGGTCCCCC CGCCGCCGCCGCAGCCCCCAACCCTCCCCATCACGATGAGCACCAGCGTTACCAGCAGTTCAAGTCGCCGTCCGA CGAACCAGCCGATCACTTCGCCACGTCAGCCGCCCAGTTCCGCGACCTGCACAACCGCCTCCAGTCTCTCACCCA CCACCTATCCTCCATCTCGGCCGAGCTAGCCAACTACGACCACTACAACGAACAGCGCAACGACCAGGTGACCAA GGCGCTCGATGCCCTCCGCTCGCGTCTCCCCGCCGGCTCAGACCTCGTCGCGCGCGTCCAGGATCTGGAGAAGGA AGTGCGGGCGATGCGCAACGATATGAACAAGGGTCTGGCGTCGCATCACGACTCTTTCCAGGATTACCTATCGGA TCATCACGACTCGCTCGCCCAGACCATGATGCACTCCATGCCCGGCCACGGAAAGATCATCTTTGTCATTGTCGC GTCGCAGGTTGTGCTCGCCGTCGGATACGTTTTGTATAAGCGACGCAAGGCGAGCAGTCCCAAGAAGTATCTGTG A |