© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophun1|1534 |
| Gene name | |
| Location | Contig_163:24120..25658 |
| Strand | - |
| Gene length (bp) | 1538 |
| Transcript length (bp) | 1437 |
| Coding sequence length (bp) | 1437 |
| Protein length (aa) | 479 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF03348 | Serinc | Serine incorporator (Serinc) | 2.0E-170 | 23 | 474 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q12116|TMS1_YEAST | Membrane protein TMS1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TMS1 PE=1 SV=1 | 1 | 476 | 3.0E-140 |
| sp|Q9HDY3|YK17_SCHPO | Membrane protein PB1A10.07c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAPB1A10.07c PE=3 SV=1 | 1 | 475 | 4.0E-106 |
| sp|A7S4N4|SERIC_NEMVE | Probable serine incorporator OS=Nematostella vectensis GN=serinc PE=3 SV=1 | 23 | 474 | 2.0E-78 |
| sp|Q9QZI8|SERC1_MOUSE | Serine incorporator 1 OS=Mus musculus GN=Serinc1 PE=1 SV=1 | 1 | 476 | 9.0E-70 |
| sp|Q5R533|SERC3_PONAB | Serine incorporator 3 OS=Pongo abelii GN=SERINC3 PE=2 SV=1 | 1 | 474 | 1.0E-69 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q12116|TMS1_YEAST | Membrane protein TMS1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TMS1 PE=1 SV=1 | 1 | 476 | 3.0E-140 |
| sp|Q9HDY3|YK17_SCHPO | Membrane protein PB1A10.07c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAPB1A10.07c PE=3 SV=1 | 1 | 475 | 4.0E-106 |
| sp|A7S4N4|SERIC_NEMVE | Probable serine incorporator OS=Nematostella vectensis GN=serinc PE=3 SV=1 | 23 | 474 | 2.0E-78 |
| sp|Q9QZI8|SERC1_MOUSE | Serine incorporator 1 OS=Mus musculus GN=Serinc1 PE=1 SV=1 | 1 | 476 | 9.0E-70 |
| sp|Q5R533|SERC3_PONAB | Serine incorporator 3 OS=Pongo abelii GN=SERINC3 PE=2 SV=1 | 1 | 474 | 1.0E-69 |
| sp|Q7TNK0|SERC1_RAT | Serine incorporator 1 OS=Rattus norvegicus GN=Serinc1 PE=1 SV=1 | 1 | 476 | 1.0E-68 |
| sp|Q13530|SERC3_HUMAN | Serine incorporator 3 OS=Homo sapiens GN=SERINC3 PE=2 SV=2 | 1 | 474 | 3.0E-68 |
| sp|Q3MHV9|SERC1_BOVIN | Serine incorporator 1 OS=Bos taurus GN=SERINC1 PE=2 SV=1 | 1 | 476 | 3.0E-65 |
| sp|Q5R419|SERC1_PONAB | Serine incorporator 1 OS=Pongo abelii GN=SERINC1 PE=2 SV=1 | 1 | 476 | 1.0E-64 |
| sp|Q9NRX5|SERC1_HUMAN | Serine incorporator 1 OS=Homo sapiens GN=SERINC1 PE=1 SV=1 | 1 | 476 | 2.0E-64 |
| sp|A4FUZ5|SERC3_BOVIN | Serine incorporator 3 OS=Bos taurus GN=SERINC3 PE=2 SV=1 | 1 | 474 | 4.0E-63 |
| sp|A9UY97|SERIC_MONBE | Probable serine incorporator OS=Monosiga brevicollis GN=serinc PE=3 SV=1 | 23 | 474 | 2.0E-61 |
| sp|Q54UF8|SERIC_DICDI | Probable serine incorporator OS=Dictyostelium discoideum GN=serinc PE=3 SV=1 | 43 | 425 | 9.0E-55 |
| sp|Q9QZI9|SERC3_MOUSE | Serine incorporator 3 OS=Mus musculus GN=Serinc3 PE=1 SV=2 | 1 | 474 | 3.0E-51 |
| sp|Q8BHJ6|SERC5_MOUSE | Serine incorporator 5 OS=Mus musculus GN=Serinc5 PE=2 SV=1 | 23 | 474 | 5.0E-48 |
| sp|Q8K0E7|SERC2_MOUSE | Serine incorporator 2 OS=Mus musculus GN=Serinc2 PE=2 SV=1 | 18 | 474 | 5.0E-46 |
| sp|Q96SA4|SERC2_HUMAN | Serine incorporator 2 OS=Homo sapiens GN=SERINC2 PE=2 SV=3 | 18 | 474 | 6.0E-46 |
| sp|Q63175|SERC5_RAT | Serine incorporator 5 OS=Rattus norvegicus GN=Serinc5 PE=2 SV=1 | 23 | 474 | 2.0E-41 |
| sp|Q4R6L9|SERC5_MACFA | Serine incorporator 5 OS=Macaca fascicularis GN=SERINC5 PE=2 SV=1 | 51 | 474 | 2.0E-41 |
| sp|Q803X0|SERC5_DANRE | Serine incorporator 5 OS=Danio rerio GN=serinc5 PE=2 SV=1 | 19 | 477 | 4.0E-41 |
| sp|Q58CW5|SERC2_BOVIN | Serine incorporator 2 OS=Bos taurus GN=SERINC2 PE=2 SV=1 | 18 | 474 | 3.0E-40 |
| sp|Q86VE9|SERC5_HUMAN | Serine incorporator 5 OS=Homo sapiens GN=SERINC5 PE=2 SV=1 | 23 | 425 | 5.0E-40 |
| sp|A6NH21|SERC4_HUMAN | Serine incorporator 4 OS=Homo sapiens GN=SERINC4 PE=2 SV=1 | 25 | 457 | 6.0E-34 |
| sp|Q5XK03|SERC4_MOUSE | Serine incorporator 4 OS=Mus musculus GN=Serinc4 PE=2 SV=1 | 23 | 457 | 1.0E-30 |
| sp|A8WCG0|SERC4_RAT | Serine incorporator 4 OS=Rattus norvegicus GN=Serinc4 PE=2 SV=2 | 21 | 457 | 1.0E-28 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016020 | membrane | Yes |
| GO:0110165 | cellular anatomical entity | No |
| GO:0005575 | cellular_component | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 23 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 15 | 37 | 22 |
| 2 | 49 | 71 | 22 |
| 3 | 96 | 118 | 22 |
| 4 | 131 | 150 | 19 |
| 5 | 160 | 179 | 19 |
| 6 | 200 | 222 | 22 |
| 7 | 232 | 254 | 22 |
| 8 | 308 | 330 | 22 |
| 9 | 406 | 428 | 22 |
| 10 | 449 | 471 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophun1|1534 MGGVLSLPLLALPSVGPIISFAATCCGAATCSVFCRACGKCGNSVATRIAYALLLLVNSILAWIMLTPWAVRKLQ HLSFDYVKINCPTGQCYGWLAVHRINFALGLFHLVLAGLLLGVNTSRNPRAVLQNGYWGPKLITWVSLMVVAFLI PDKFFMFYGNYVSLICAMLFLLLGLVLLVDLAHNWAEYCLSQIENQDSKFWRFTLIGSTLGMYLASIAMTVVQYV FFAKGDCAMNQAVISVNLLLWIFVSFLSVNPTVQEHNPRAGLAQAAMVAAYCTYLIMSAVSMEPDGDNQCNPLIR GQETRTTSVIIGAIVTMLTIAYTTTRAATQSLGLGSPDGAIRLPEDDNQHGLVTQQPTARGQMRAEALRRAIEEG SLPADAELDSEMDADERPEHDDERSCTQYNYTIFHVIFFLATAWVSTLLTLKYEETKQDGDFATVGRTYAASWVK IFSAWICYGLYIWTLMAPIILPERFDSL* |
| Coding | >Ophun1|1534 ATGGGAGGGGTTCTATCACTGCCGCTACTTGCGCTGCCGAGTGTCGGTCCGATTATTTCCTTCGCGGCAACCTGC TGCGGAGCGGCGACATGCTCTGTGTTTTGCCGCGCGTGCGGCAAATGCGGCAATAGCGTGGCAACTCGTATCGCT TACGCTCTCCTTCTCCTCGTCAATTCTATTCTAGCCTGGATCATGCTCACACCTTGGGCCGTCAGAAAGCTGCAA CATCTCTCATTCGACTATGTCAAAATAAACTGCCCCACTGGCCAATGCTACGGCTGGCTCGCTGTTCATCGCATC AACTTTGCCCTTGGTCTTTTCCATCTAGTCCTGGCCGGACTGCTACTGGGCGTCAACACCTCGAGGAATCCACGT GCCGTTCTGCAGAATGGGTACTGGGGCCCCAAGCTGATTACTTGGGTGTCTTTGATGGTCGTTGCATTCTTGATT CCCGACAAGTTCTTCATGTTTTACGGGAATTATGTGTCCCTCATCTGCGCAATGCTTTTTCTTCTTCTCGGCCTC GTCCTACTCGTTGACCTTGCACACAACTGGGCAGAATACTGTCTATCCCAGATTGAGAACCAGGACTCGAAGTTC TGGCGCTTTACTCTTATCGGTTCAACACTCGGAATGTACCTCGCGTCAATTGCAATGACGGTGGTTCAATATGTC TTCTTCGCTAAAGGAGATTGCGCAATGAACCAGGCTGTGATAAGCGTCAACTTGCTACTCTGGATCTTTGTATCC TTTCTTTCTGTTAATCCGACGGTTCAAGAGCACAATCCCCGCGCAGGATTAGCACAGGCAGCCATGGTTGCTGCG TATTGCACCTACCTTATCATGTCGGCTGTGTCAATGGAGCCCGACGGCGACAATCAATGCAATCCCTTGATCCGC GGACAAGAGACTAGGACAACTTCAGTTATCATTGGTGCTATTGTTACCATGCTAACTATAGCATATACCACCACA CGCGCTGCTACTCAGAGCTTGGGTCTTGGGTCTCCCGATGGTGCTATCCGGCTTCCTGAAGATGATAATCAGCAT GGCCTGGTCACCCAACAACCGACCGCTCGGGGTCAGATGCGGGCCGAAGCACTACGACGCGCGATTGAGGAAGGA AGTTTGCCTGCAGATGCGGAACTTGACAGCGAGATGGACGCCGACGAGAGACCAGAGCACGATGACGAGCGCTCT TGCACTCAGTACAACTATACTATTTTTCACGTCATTTTCTTTCTTGCCACGGCGTGGGTGTCAACCTTACTCACA CTGAAGTATGAAGAAACAAAGCAAGACGGCGACTTCGCAACTGTTGGCCGGACGTACGCCGCAAGTTGGGTCAAA ATCTTTAGTGCGTGGATATGCTATGGCCTGTATATCTGGACTTTGATGGCTCCGATCATTCTGCCTGAAAGGTTC GATTCGTTATAG |
| Transcript | >Ophun1|1534 ATGGGAGGGGTTCTATCACTGCCGCTACTTGCGCTGCCGAGTGTCGGTCCGATTATTTCCTTCGCGGCAACCTGC TGCGGAGCGGCGACATGCTCTGTGTTTTGCCGCGCGTGCGGCAAATGCGGCAATAGCGTGGCAACTCGTATCGCT TACGCTCTCCTTCTCCTCGTCAATTCTATTCTAGCCTGGATCATGCTCACACCTTGGGCCGTCAGAAAGCTGCAA CATCTCTCATTCGACTATGTCAAAATAAACTGCCCCACTGGCCAATGCTACGGCTGGCTCGCTGTTCATCGCATC AACTTTGCCCTTGGTCTTTTCCATCTAGTCCTGGCCGGACTGCTACTGGGCGTCAACACCTCGAGGAATCCACGT GCCGTTCTGCAGAATGGGTACTGGGGCCCCAAGCTGATTACTTGGGTGTCTTTGATGGTCGTTGCATTCTTGATT CCCGACAAGTTCTTCATGTTTTACGGGAATTATGTGTCCCTCATCTGCGCAATGCTTTTTCTTCTTCTCGGCCTC GTCCTACTCGTTGACCTTGCACACAACTGGGCAGAATACTGTCTATCCCAGATTGAGAACCAGGACTCGAAGTTC TGGCGCTTTACTCTTATCGGTTCAACACTCGGAATGTACCTCGCGTCAATTGCAATGACGGTGGTTCAATATGTC TTCTTCGCTAAAGGAGATTGCGCAATGAACCAGGCTGTGATAAGCGTCAACTTGCTACTCTGGATCTTTGTATCC TTTCTTTCTGTTAATCCGACGGTTCAAGAGCACAATCCCCGCGCAGGATTAGCACAGGCAGCCATGGTTGCTGCG TATTGCACCTACCTTATCATGTCGGCTGTGTCAATGGAGCCCGACGGCGACAATCAATGCAATCCCTTGATCCGC GGACAAGAGACTAGGACAACTTCAGTTATCATTGGTGCTATTGTTACCATGCTAACTATAGCATATACCACCACA CGCGCTGCTACTCAGAGCTTGGGTCTTGGGTCTCCCGATGGTGCTATCCGGCTTCCTGAAGATGATAATCAGCAT GGCCTGGTCACCCAACAACCGACCGCTCGGGGTCAGATGCGGGCCGAAGCACTACGACGCGCGATTGAGGAAGGA AGTTTGCCTGCAGATGCGGAACTTGACAGCGAGATGGACGCCGACGAGAGACCAGAGCACGATGACGAGCGCTCT TGCACTCAGTACAACTATACTATTTTTCACGTCATTTTCTTTCTTGCCACGGCGTGGGTGTCAACCTTACTCACA CTGAAGTATGAAGAAACAAAGCAAGACGGCGACTTCGCAACTGTTGGCCGGACGTACGCCGCAAGTTGGGTCAAA ATCTTTAGTGCGTGGATATGCTATGGCCTGTATATCTGGACTTTGATGGCTCCGATCATTCTGCCTGAAAGGTTC GATTCGTTATAG |
| Gene | >Ophun1|1534 ATGGGAGGGGTTCTATCACTGCCGCTACTTGCGCTGCCGAGTGTCGGTCCGGTACGTCGTGTCGCCCTTTTTTGT GCGGATTCTACTGACGCCGTGACTAGATTATTTCCTTCGCGGCAACCTGCTGCGGAGCGGCGACATGCTCTGTGT TTTGCCGCGCGTGCGGCAAATGCGGCAATAGGTATGATGAGCCTCCCTGTCGTCTTTGGCCTTGCTAATCAGAAC TCCTCAGCGTGGCAACTCGTATCGCTTACGCTCTCCTTCTCCTCGTCAATTCTATTCTAGCCTGGATCATGCTCA CACCTTGGGCCGTCAGAAAGCTGCAACATCTCTCATTCGACTATGTCAAAATAAACTGCCCCACTGGCCAATGCT ACGGCTGGCTCGCTGTTCATCGCATCAACTTTGCCCTTGGTCTTTTCCATCTAGTCCTGGCCGGACTGCTACTGG GCGTCAACACCTCGAGGAATCCACGTGCCGTTCTGCAGAATGGGTACTGGGGCCCCAAGCTGATTACTTGGGTGT CTTTGATGGTCGTTGCATTCTTGATTCCCGACAAGTTCTTCATGTTTTACGGGAATTATGTGTCCCTCATCTGCG CAATGCTTTTTCTTCTTCTCGGCCTCGTCCTACTCGTTGACCTTGCACACAACTGGGCAGAATACTGTCTATCCC AGATTGAGAACCAGGACTCGAAGTTCTGGCGCTTTACTCTTATCGGTTCAACACTCGGAATGTACCTCGCGTCAA TTGCAATGACGGTGGTTCAATATGTCTTCTTCGCTAAAGGAGATTGCGCAATGAACCAGGCTGTGATAAGCGTCA ACTTGCTACTCTGGATCTTTGTATCCTTTCTTTCTGTTAATCCGACGGTTCAAGAGCACAATCCCCGCGCAGGAT TAGCACAGGCAGCCATGGTTGCTGCGTATTGCACCTACCTTATCATGTCGGCTGTGTCAATGGAGCCCGACGGCG ACAATCAATGCAATCCCTTGATCCGCGGACAAGAGACTAGGACAACTTCAGTTATCATTGGTGCTATTGTTACCA TGCTAACTATAGCATATACCACCACACGCGCTGCTACTCAGAGCTTGGGTCTTGGGTCTCCCGATGGTGCTATCC GGCTTCCTGAAGATGATAATCAGCATGGCCTGGTCACCCAACAACCGACCGCTCGGGGTCAGATGCGGGCCGAAG CACTACGACGCGCGATTGAGGAAGGAAGTTTGCCTGCAGATGCGGAACTTGACAGCGAGATGGACGCCGACGAGA GACCAGAGCACGATGACGAGCGCTCTTGCACTCAGTACAACTATACTATTTTTCACGTCATTTTCTTTCTTGCCA CGGCGTGGGTGTCAACCTTACTCACACTGAAGTATGAAGAAACAAAGCAAGACGGCGACTTCGCAACTGTTGGCC GGACGTACGCCGCAAGTTGGGTCAAAATCTTTAGTGCGTGGATATGCTATGGCCTGTATATCTGGACTTTGATGG CTCCGATCATTCTGCCTGAAAGGTTCGATTCGTTATAG |