Fungal Genomics

at Utrecht University

General Properties

Protein IDOphun1|1493
Gene name
LocationContig_160:23302..25310
Strand+
Gene length (bp)2008
Transcript length (bp)1950
Coding sequence length (bp)1950
Protein length (aa) 650

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF05970 PIF1 PIF1-like helicase 3.1E-25 118 274
PF05970 PIF1 PIF1-like helicase 5.1E-07 368 467
PF13604 AAA_30 AAA domain 7.5E-17 120 282
PF13245 AAA_19 AAA domain 6.7E-11 122 273

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q9UUA2|PIF1_SCHPO ATP-dependent DNA helicase pfh1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pfh1 PE=1 SV=1 118 605 3.0E-55
sp|Q59RQ0|PIF1_CANAL ATP-dependent DNA helicase PIF1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=PIF1 PE=3 SV=1 118 605 8.0E-54
sp|P07271|PIF1_YEAST ATP-dependent DNA helicase PIF1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PIF1 PE=1 SV=2 94 605 6.0E-52
sp|A6ZM04|PIF1_YEAS7 ATP-dependent DNA helicase PIF1 OS=Saccharomyces cerevisiae (strain YJM789) GN=PIF1 PE=3 SV=1 94 605 6.0E-52
sp|Q5AXT5|PIF1_EMENI ATP-dependent DNA helicase PIF1 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=pif1 PE=3 SV=2 99 605 1.0E-51
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Swissprot ID Swissprot Description Start End E-value
sp|Q9UUA2|PIF1_SCHPO ATP-dependent DNA helicase pfh1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pfh1 PE=1 SV=1 118 605 3.0E-55
sp|Q59RQ0|PIF1_CANAL ATP-dependent DNA helicase PIF1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=PIF1 PE=3 SV=1 118 605 8.0E-54
sp|P07271|PIF1_YEAST ATP-dependent DNA helicase PIF1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PIF1 PE=1 SV=2 94 605 6.0E-52
sp|A6ZM04|PIF1_YEAS7 ATP-dependent DNA helicase PIF1 OS=Saccharomyces cerevisiae (strain YJM789) GN=PIF1 PE=3 SV=1 94 605 6.0E-52
sp|Q5AXT5|PIF1_EMENI ATP-dependent DNA helicase PIF1 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=pif1 PE=3 SV=2 99 605 1.0E-51
sp|A5WFR0|PIF1_PSYWF ATP-dependent DNA helicase pif1 OS=Psychrobacter sp. (strain PRwf-1) GN=pif1 PE=3 SV=1 121 607 4.0E-51
sp|Q9H611|PIF1_HUMAN ATP-dependent DNA helicase PIF1 OS=Homo sapiens GN=PIF1 PE=1 SV=2 111 605 5.0E-51
sp|Q7ZV90|PIF1_DANRE ATP-dependent DNA helicase PIF1 OS=Danio rerio GN=pif1 PE=2 SV=1 117 605 5.0E-50
sp|Q0R4F1|PIF1_XENLA ATP-dependent DNA helicase PIF1 OS=Xenopus laevis GN=pif1 PE=2 SV=1 117 605 5.0E-50
sp|Q1HG60|PIF1_RAT ATP-dependent DNA helicase PIF1 OS=Rattus norvegicus GN=Pif1 PE=2 SV=1 111 605 3.0E-49
sp|Q80SX8|PIF1_MOUSE ATP-dependent DNA helicase PIF1 OS=Mus musculus GN=Pif1 PE=1 SV=2 111 605 4.0E-49
sp|Q9QSK3|VF030_IIV6 Uncharacterized protein 030L OS=Invertebrate iridescent virus 6 GN=IIV6-030L PE=3 SV=1 117 607 4.0E-38
sp|Q57YG0|PIF7_TRYB2 ATP-dependent DNA helicase PIF7 OS=Trypanosoma brucei brucei (strain 927/4 GUTat10.1) GN=PIF7 PE=3 SV=1 115 606 1.0E-33
sp|Q196V4|VF030_IIV3 Uncharacterized protein 106R OS=Invertebrate iridescent virus 3 GN=IIV3-106R PE=3 SV=1 121 603 1.0E-31
sp|Q6MHJ5|PIF1_BDEBA ATP-dependent DNA helicase pif1 OS=Bdellovibrio bacteriovorus (strain ATCC 15356 / DSM 50701 / NCIB 9529 / HD100) GN=pif1 PE=3 SV=1 115 607 2.0E-30
sp|Q38CE9|PIF6_TRYB2 ATP-dependent DNA helicase PIF6 OS=Trypanosoma brucei brucei (strain 927/4 GUTat10.1) GN=PIF6 PE=3 SV=1 113 645 7.0E-30
sp|Q0P9V4|PIF1_CAMJE ATP-dependent DNA helicase pif1 OS=Campylobacter jejuni subsp. jejuni serotype O:2 (strain ATCC 700819 / NCTC 11168) GN=pif1 PE=3 SV=1 129 605 2.0E-28
sp|P38766|RRM3_YEAST ATP-dependent DNA helicase RRM3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RRM3 PE=1 SV=1 118 402 8.0E-26
sp|Q580X6|PIF5_TRYB2 ATP-dependent DNA helicase PIF5 OS=Trypanosoma brucei brucei (strain 927/4 GUTat10.1) GN=PIF5 PE=1 SV=1 101 348 2.0E-19
sp|P38766|RRM3_YEAST ATP-dependent DNA helicase RRM3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RRM3 PE=1 SV=1 551 605 1.0E-12
sp|Q384Y1|PIF1_TRYB2 ATP-dependent DNA helicase PIF1 OS=Trypanosoma brucei brucei (strain 927/4 GUTat10.1) GN=PIF1 PE=1 SV=1 121 404 2.0E-11
sp|Q383A1|PIF3_TRYB2 ATP-dependent DNA helicase PIF3 OS=Trypanosoma brucei brucei (strain 927/4 GUTat10.1) GN=PIF3 PE=3 SV=1 121 402 3.0E-11
sp|Q381V6|PIF4_TRYB2 ATP-dependent DNA helicase PIF4 OS=Trypanosoma brucei brucei (strain 927/4 GUTat10.1) GN=PIF4 PE=3 SV=1 121 270 3.0E-11
sp|Q384Y0|PIF2_TRYB2 ATP-dependent DNA helicase PIF2 OS=Trypanosoma brucei brucei (strain 927/4 GUTat10.1) GN=PIF2 PE=1 SV=1 116 270 4.0E-09
sp|Q580X6|PIF5_TRYB2 ATP-dependent DNA helicase PIF5 OS=Trypanosoma brucei brucei (strain 927/4 GUTat10.1) GN=PIF5 PE=1 SV=1 553 605 8.0E-08
sp|Q9RT63|RECDL_DEIRA ATP-dependent RecD-like DNA helicase OS=Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422) GN=recD2 PE=1 SV=1 6 273 3.0E-07
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GO

GO Term Description Terminal node
GO:0006281 DNA repair Yes
GO:0000723 telomere maintenance Yes
GO:0003678 DNA helicase activity Yes
GO:0008152 metabolic process No
GO:0043170 macromolecule metabolic process No
GO:0006139 nucleobase-containing compound metabolic process No
GO:0071840 cellular component organization or biogenesis No
GO:0006725 cellular aromatic compound metabolic process No
GO:0050896 response to stimulus No
GO:0006259 DNA metabolic process No
GO:0044260 cellular macromolecule metabolic process No
GO:0090304 nucleic acid metabolic process No
GO:0140640 catalytic activity, acting on a nucleic acid No
GO:0008094 ATP-dependent activity, acting on DNA No
GO:0009987 cellular process No
GO:0003824 catalytic activity No
GO:0032200 telomere organization No
GO:0044238 primary metabolic process No
GO:0044237 cellular metabolic process No
GO:0046483 heterocycle metabolic process No
GO:0004386 helicase activity No
GO:0006950 response to stress No
GO:0016043 cellular component organization No
GO:0006996 organelle organization No
GO:0071704 organic substance metabolic process No
GO:1901360 organic cyclic compound metabolic process No
GO:0008150 biological_process No
GO:0140097 catalytic activity, acting on DNA No
GO:0051716 cellular response to stimulus No
GO:0006974 cellular response to DNA damage stimulus No
GO:0034641 cellular nitrogen compound metabolic process No
GO:0003674 molecular_function No
GO:0051276 chromosome organization No
GO:0033554 cellular response to stress No
GO:0140657 ATP-dependent activity No
GO:0006807 nitrogen compound metabolic process No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 25 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophun1|1493
MTELVSSAMQTPPHLSAPTQSSYADDSPATQGRSSPPASSFPASKRKRESVCQTLRSPRATMEMSQESTATVNTS
DGDSQPLFWYQTTGGDSPPPFVRQQSDASTEAIQPLTSTEPKLCGEQQYIVDLIAGGRNVFFTGSAGCGKSTVLK
AALNMLREKDPDLKVHVLAPTGQAALQINGVTTWSYMGWTPDYHKLAIEKLKRKGWRKHVEKRLKETEILVIDEI
SMIENHHFERINACMKFVRQYHLDAPERTAFGGVQIIVTGDFCQLPPVKPFRHCMSCGKEMQVGVAEMEFSCSDC
HVCFRDNEKWAFMSSAWEECQFEHVHLRKIHRQKDEKFVKMLQKCRLGIPFTPFELRTLTDHRCNVARATHLFST
RAEVKRVNDENFYKLKTPVATFCAHDGFTWEHERHPQLEHYNNRAPDGTLEVLRDSRLQSRVDLRIGMLVALQIN
LDLPAGLCNGSQGIICGFEDYDPARLPRRWTAKDPPTGLDMDQQKIGGDYAALKEIQIKGFVERQERKLWPRVLF
HNGIRRTIYASCMVNTAGDEAPYSLLYRTQIPLVAAWALSIHKSQGMTLDRVIVDLSKAFEEGQVYVALSRARSL
EGLKVEGAVEGLAVGNGGNPDVQRFLEDKFGSLRATMEASEPQVIVLSP*
Coding >Ophun1|1493
ATGACGGAACTCGTCTCGTCTGCTATGCAGACACCGCCGCACCTGTCGGCACCGACCCAATCCTCCTATGCCGAC
GACTCGCCAGCAACTCAGGGCCGGTCATCGCCTCCAGCAAGCTCTTTTCCCGCGAGCAAGAGGAAGCGCGAAAGT
GTGTGCCAGACGCTGCGCTCTCCAAGGGCGACCATGGAGATGAGCCAAGAGTCGACGGCGACAGTGAACACGAGC
GATGGGGACTCGCAGCCGCTGTTCTGGTATCAGACTACCGGTGGAGATTCTCCGCCGCCGTTCGTACGCCAGCAG
AGCGACGCGTCGACGGAGGCCATCCAGCCGTTGACCTCGACGGAGCCCAAGCTTTGCGGAGAACAGCAGTACATT
GTTGATCTCATTGCCGGGGGCCGCAACGTCTTCTTCACTGGCTCCGCTGGGTGCGGAAAGTCGACCGTCTTGAAG
GCTGCCTTGAATATGCTGCGAGAGAAGGATCCGGATCTCAAGGTCCACGTCTTGGCCCCGACAGGTCAAGCGGCG
CTCCAGATCAATGGCGTGACGACGTGGTCCTACATGGGATGGACGCCCGACTATCACAAGCTCGCAATTGAGAAG
CTGAAAAGAAAAGGCTGGCGGAAACACGTTGAAAAACGCCTCAAAGAAACCGAGATTCTCGTCATCGACGAAATC
AGCATGATTGAGAATCATCACTTTGAAAGGATTAATGCCTGCATGAAGTTCGTTCGGCAGTACCATCTCGATGCT
CCAGAACGCACTGCGTTTGGAGGCGTGCAGATTATCGTCACTGGAGACTTCTGCCAGCTGCCGCCCGTCAAGCCA
TTCAGGCACTGCATGTCCTGCGGCAAGGAAATGCAAGTCGGCGTTGCAGAAATGGAGTTTAGCTGCTCTGACTGT
CACGTCTGTTTCCGCGATAACGAAAAGTGGGCGTTTATGAGCTCAGCGTGGGAAGAATGCCAGTTCGAACATGTG
CATCTTAGGAAGATTCACCGTCAAAAGGATGAGAAGTTCGTCAAGATGCTTCAGAAATGCCGTCTGGGCATTCCC
TTTACGCCGTTCGAGTTGAGGACTTTGACGGACCATCGGTGCAACGTTGCGAGAGCCACGCACCTCTTCTCCACC
AGAGCAGAGGTCAAAAGAGTCAACGATGAAAACTTTTACAAGCTCAAAACCCCTGTTGCCACGTTTTGCGCTCAC
GATGGCTTTACCTGGGAGCATGAACGTCATCCGCAACTGGAGCATTACAACAACAGGGCGCCCGACGGGACCCTC
GAAGTTCTCAGGGACAGTCGGCTTCAATCCCGGGTAGACTTGAGGATCGGGATGCTGGTCGCATTGCAAATTAAT
CTCGATCTCCCAGCAGGACTCTGCAACGGCAGCCAGGGCATTATCTGCGGTTTTGAGGATTATGATCCTGCTCGT
CTCCCTCGGCGGTGGACAGCCAAAGACCCCCCAACAGGACTTGACATGGATCAACAGAAGATCGGTGGTGACTAC
GCAGCATTGAAAGAGATACAGATTAAAGGCTTCGTGGAGCGGCAGGAACGCAAGCTGTGGCCTCGCGTCCTCTTC
CACAACGGCATCAGACGCACCATCTACGCCTCCTGCATGGTCAACACGGCGGGCGACGAGGCTCCCTACTCGCTC
CTGTACCGCACTCAGATACCACTGGTGGCCGCCTGGGCGCTGAGCATCCACAAGAGCCAAGGGATGACGCTGGAC
CGCGTCATTGTCGACCTCTCCAAGGCGTTCGAAGAGGGACAAGTCTATGTGGCCCTGTCCCGCGCGAGGAGCCTC
GAAGGTCTCAAGGTGGAGGGCGCCGTCGAAGGCTTGGCCGTGGGGAATGGGGGGAATCCGGATGTCCAGCGCTTT
CTCGAGGACAAATTCGGGTCCCTGCGGGCGACGATGGAGGCGAGCGAACCACAAGTCATCGTACTGAGCCCTTGA
Transcript >Ophun1|1493
ATGACGGAACTCGTCTCGTCTGCTATGCAGACACCGCCGCACCTGTCGGCACCGACCCAATCCTCCTATGCCGAC
GACTCGCCAGCAACTCAGGGCCGGTCATCGCCTCCAGCAAGCTCTTTTCCCGCGAGCAAGAGGAAGCGCGAAAGT
GTGTGCCAGACGCTGCGCTCTCCAAGGGCGACCATGGAGATGAGCCAAGAGTCGACGGCGACAGTGAACACGAGC
GATGGGGACTCGCAGCCGCTGTTCTGGTATCAGACTACCGGTGGAGATTCTCCGCCGCCGTTCGTACGCCAGCAG
AGCGACGCGTCGACGGAGGCCATCCAGCCGTTGACCTCGACGGAGCCCAAGCTTTGCGGAGAACAGCAGTACATT
GTTGATCTCATTGCCGGGGGCCGCAACGTCTTCTTCACTGGCTCCGCTGGGTGCGGAAAGTCGACCGTCTTGAAG
GCTGCCTTGAATATGCTGCGAGAGAAGGATCCGGATCTCAAGGTCCACGTCTTGGCCCCGACAGGTCAAGCGGCG
CTCCAGATCAATGGCGTGACGACGTGGTCCTACATGGGATGGACGCCCGACTATCACAAGCTCGCAATTGAGAAG
CTGAAAAGAAAAGGCTGGCGGAAACACGTTGAAAAACGCCTCAAAGAAACCGAGATTCTCGTCATCGACGAAATC
AGCATGATTGAGAATCATCACTTTGAAAGGATTAATGCCTGCATGAAGTTCGTTCGGCAGTACCATCTCGATGCT
CCAGAACGCACTGCGTTTGGAGGCGTGCAGATTATCGTCACTGGAGACTTCTGCCAGCTGCCGCCCGTCAAGCCA
TTCAGGCACTGCATGTCCTGCGGCAAGGAAATGCAAGTCGGCGTTGCAGAAATGGAGTTTAGCTGCTCTGACTGT
CACGTCTGTTTCCGCGATAACGAAAAGTGGGCGTTTATGAGCTCAGCGTGGGAAGAATGCCAGTTCGAACATGTG
CATCTTAGGAAGATTCACCGTCAAAAGGATGAGAAGTTCGTCAAGATGCTTCAGAAATGCCGTCTGGGCATTCCC
TTTACGCCGTTCGAGTTGAGGACTTTGACGGACCATCGGTGCAACGTTGCGAGAGCCACGCACCTCTTCTCCACC
AGAGCAGAGGTCAAAAGAGTCAACGATGAAAACTTTTACAAGCTCAAAACCCCTGTTGCCACGTTTTGCGCTCAC
GATGGCTTTACCTGGGAGCATGAACGTCATCCGCAACTGGAGCATTACAACAACAGGGCGCCCGACGGGACCCTC
GAAGTTCTCAGGGACAGTCGGCTTCAATCCCGGGTAGACTTGAGGATCGGGATGCTGGTCGCATTGCAAATTAAT
CTCGATCTCCCAGCAGGACTCTGCAACGGCAGCCAGGGCATTATCTGCGGTTTTGAGGATTATGATCCTGCTCGT
CTCCCTCGGCGGTGGACAGCCAAAGACCCCCCAACAGGACTTGACATGGATCAACAGAAGATCGGTGGTGACTAC
GCAGCATTGAAAGAGATACAGATTAAAGGCTTCGTGGAGCGGCAGGAACGCAAGCTGTGGCCTCGCGTCCTCTTC
CACAACGGCATCAGACGCACCATCTACGCCTCCTGCATGGTCAACACGGCGGGCGACGAGGCTCCCTACTCGCTC
CTGTACCGCACTCAGATACCACTGGTGGCCGCCTGGGCGCTGAGCATCCACAAGAGCCAAGGGATGACGCTGGAC
CGCGTCATTGTCGACCTCTCCAAGGCGTTCGAAGAGGGACAAGTCTATGTGGCCCTGTCCCGCGCGAGGAGCCTC
GAAGGTCTCAAGGTGGAGGGCGCCGTCGAAGGCTTGGCCGTGGGGAATGGGGGGAATCCGGATGTCCAGCGCTTT
CTCGAGGACAAATTCGGGTCCCTGCGGGCGACGATGGAGGCGAGCGAACCACAAGTCATCGTACTGAGCCCTTGA
Gene >Ophun1|1493
ATGACGGAACGTAAGTGAGGCTATACTTATGCGTACAAGCTCGACTGACATGGTCTTCTCCTCATCAGTCGTCTC
GTCTGCTATGCAGACACCGCCGCACCTGTCGGCACCGACCCAATCCTCCTATGCCGACGACTCGCCAGCAACTCA
GGGCCGGTCATCGCCTCCAGCAAGCTCTTTTCCCGCGAGCAAGAGGAAGCGCGAAAGTGTGTGCCAGACGCTGCG
CTCTCCAAGGGCGACCATGGAGATGAGCCAAGAGTCGACGGCGACAGTGAACACGAGCGATGGGGACTCGCAGCC
GCTGTTCTGGTATCAGACTACCGGTGGAGATTCTCCGCCGCCGTTCGTACGCCAGCAGAGCGACGCGTCGACGGA
GGCCATCCAGCCGTTGACCTCGACGGAGCCCAAGCTTTGCGGAGAACAGCAGTACATTGTTGATCTCATTGCCGG
GGGCCGCAACGTCTTCTTCACTGGCTCCGCTGGGTGCGGAAAGTCGACCGTCTTGAAGGCTGCCTTGAATATGCT
GCGAGAGAAGGATCCGGATCTCAAGGTCCACGTCTTGGCCCCGACAGGTCAAGCGGCGCTCCAGATCAATGGCGT
GACGACGTGGTCCTACATGGGATGGACGCCCGACTATCACAAGCTCGCAATTGAGAAGCTGAAAAGAAAAGGCTG
GCGGAAACACGTTGAAAAACGCCTCAAAGAAACCGAGATTCTCGTCATCGACGAAATCAGCATGATTGAGAATCA
TCACTTTGAAAGGATTAATGCCTGCATGAAGTTCGTTCGGCAGTACCATCTCGATGCTCCAGAACGCACTGCGTT
TGGAGGCGTGCAGATTATCGTCACTGGAGACTTCTGCCAGCTGCCGCCCGTCAAGCCATTCAGGCACTGCATGTC
CTGCGGCAAGGAAATGCAAGTCGGCGTTGCAGAAATGGAGTTTAGCTGCTCTGACTGTCACGTCTGTTTCCGCGA
TAACGAAAAGTGGGCGTTTATGAGCTCAGCGTGGGAAGAATGCCAGTTCGAACATGTGCATCTTAGGAAGATTCA
CCGTCAAAAGGATGAGAAGTTCGTCAAGATGCTTCAGAAATGCCGTCTGGGCATTCCCTTTACGCCGTTCGAGTT
GAGGACTTTGACGGACCATCGGTGCAACGTTGCGAGAGCCACGCACCTCTTCTCCACCAGAGCAGAGGTCAAAAG
AGTCAACGATGAAAACTTTTACAAGCTCAAAACCCCTGTTGCCACGTTTTGCGCTCACGATGGCTTTACCTGGGA
GCATGAACGTCATCCGCAACTGGAGCATTACAACAACAGGGCGCCCGACGGGACCCTCGAAGTTCTCAGGGACAG
TCGGCTTCAATCCCGGGTAGACTTGAGGATCGGGATGCTGGTCGCATTGCAAATTAATCTCGATCTCCCAGCAGG
ACTCTGCAACGGCAGCCAGGGCATTATCTGCGGTTTTGAGGATTATGATCCTGCTCGTCTCCCTCGGCGGTGGAC
AGCCAAAGACCCCCCAACAGGACTTGACATGGATCAACAGAAGATCGGTGGTGACTACGCAGCATTGAAAGAGAT
ACAGATTAAAGGCTTCGTGGAGCGGCAGGAACGCAAGCTGTGGCCTCGCGTCCTCTTCCACAACGGCATCAGACG
CACCATCTACGCCTCCTGCATGGTCAACACGGCGGGCGACGAGGCTCCCTACTCGCTCCTGTACCGCACTCAGAT
ACCACTGGTGGCCGCCTGGGCGCTGAGCATCCACAAGAGCCAAGGGATGACGCTGGACCGCGTCATTGTCGACCT
CTCCAAGGCGTTCGAAGAGGGACAAGTCTATGTGGCCCTGTCCCGCGCGAGGAGCCTCGAAGGTCTCAAGGTGGA
GGGCGCCGTCGAAGGCTTGGCCGTGGGGAATGGGGGGAATCCGGATGTCCAGCGCTTTCTCGAGGACAAATTCGG
GTCCCTGCGGGCGACGATGGAGGCGAGCGAACCACAAGTCATCGTACTGAGCCCTTGA

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