© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophun1|1491 |
| Gene name | |
| Location | Contig_160:19607..20414 |
| Strand | - |
| Gene length (bp) | 807 |
| Transcript length (bp) | 678 |
| Coding sequence length (bp) | 678 |
| Protein length (aa) | 226 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF06703 | SPC25 | Microsomal signal peptidase 25 kDa subunit (SPC25) | 2.9E-49 | 14 | 166 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q04969|SPC2_YEAST | Signal peptidase complex subunit SPC2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SPC2 PE=1 SV=1 | 1 | 166 | 4.0E-15 |
| sp|Q9UTQ9|SPC2_SCHPO | Signal peptidase complex subunit spc2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=spc2 PE=3 SV=1 | 10 | 153 | 3.0E-11 |
| sp|Q28250|SPCS2_CANLF | Signal peptidase complex subunit 2 OS=Canis lupus familiaris GN=SPCS2 PE=1 SV=1 | 6 | 183 | 6.0E-10 |
| sp|Q9CYN2|SPCS2_MOUSE | Signal peptidase complex subunit 2 OS=Mus musculus GN=Spcs2 PE=1 SV=1 | 6 | 183 | 9.0E-10 |
| sp|Q4R512|SPCS2_MACFA | Signal peptidase complex subunit 2 OS=Macaca fascicularis GN=SPCS2 PE=2 SV=1 | 6 | 183 | 3.0E-09 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q04969|SPC2_YEAST | Signal peptidase complex subunit SPC2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SPC2 PE=1 SV=1 | 1 | 166 | 4.0E-15 |
| sp|Q9UTQ9|SPC2_SCHPO | Signal peptidase complex subunit spc2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=spc2 PE=3 SV=1 | 10 | 153 | 3.0E-11 |
| sp|Q28250|SPCS2_CANLF | Signal peptidase complex subunit 2 OS=Canis lupus familiaris GN=SPCS2 PE=1 SV=1 | 6 | 183 | 6.0E-10 |
| sp|Q9CYN2|SPCS2_MOUSE | Signal peptidase complex subunit 2 OS=Mus musculus GN=Spcs2 PE=1 SV=1 | 6 | 183 | 9.0E-10 |
| sp|Q4R512|SPCS2_MACFA | Signal peptidase complex subunit 2 OS=Macaca fascicularis GN=SPCS2 PE=2 SV=1 | 6 | 183 | 3.0E-09 |
| sp|Q5RAY6|SPCS2_PONAB | Signal peptidase complex subunit 2 OS=Pongo abelii GN=SPCS2 PE=2 SV=1 | 6 | 183 | 3.0E-09 |
| sp|Q15005|SPCS2_HUMAN | Signal peptidase complex subunit 2 OS=Homo sapiens GN=SPCS2 PE=1 SV=3 | 6 | 183 | 4.0E-09 |
| sp|Q9XWW1|SPCS2_CAEEL | Probable signal peptidase complex subunit 2 OS=Caenorhabditis elegans GN=hpo-21 PE=1 SV=1 | 5 | 156 | 4.0E-08 |
| sp|Q5M8Y1|SPCS2_XENTR | Probable signal peptidase complex subunit 2 OS=Xenopus tropicalis GN=spcs2 PE=2 SV=1 | 6 | 182 | 7.0E-08 |
| sp|Q55E35|SPCS2_DICDI | Signal peptidase complex subunit 2 OS=Dictyostelium discoideum GN=spcs2 PE=3 SV=2 | 6 | 160 | 1.0E-07 |
| sp|Q5BJI9|SPCS2_DANRE | Probable signal peptidase complex subunit 2 OS=Danio rerio GN=spcs2 PE=2 SV=1 | 6 | 161 | 8.0E-07 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016021 | integral component of membrane | Yes |
| GO:0006465 | signal peptide processing | Yes |
| GO:0005787 | signal peptidase complex | Yes |
| GO:0044237 | cellular metabolic process | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:1902494 | catalytic complex | No |
| GO:0009987 | cellular process | No |
| GO:0008152 | metabolic process | No |
| GO:0006518 | peptide metabolic process | No |
| GO:0098796 | membrane protein complex | No |
| GO:0016485 | protein processing | No |
| GO:0032991 | protein-containing complex | No |
| GO:0051604 | protein maturation | No |
| GO:0006508 | proteolysis | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0019538 | protein metabolic process | No |
| GO:0140534 | endoplasmic reticulum protein-containing complex | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0005575 | cellular_component | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| GO:1901564 | organonitrogen compound metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0043603 | cellular amide metabolic process | No |
| GO:1905368 | peptidase complex | No |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 41 | 63 | 22 |
| 2 | 73 | 90 | 17 |
| Orthofinder run ID | 4 |
| Orthogroup | 4703 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophun1|1491 MAASEKISVYNIADLKNTSDDAIPNYLNSLRFKQSHFLTDVRLALGYGAFFIAAASFLWDYRLGFETTKVYTAVA VAIYAVVNTTLTFWITRVEKGTVYQGVSPDGEELSIATTVTKNDPTYRLTVTVKPRGSTPQVIKFTAPFATFFDE TGRFVVKPFQKLFASSVPLVGRLDPKRATSNKIASQDLLDADPDLLDAVLAADPAKVTSSASDAKTGGKRRKSAK * |
| Coding | >Ophun1|1491 ATGGCCGCCTCCGAGAAGATCAGCGTCTACAATATCGCTGACCTCAAGAACACGTCCGACGACGCCATCCCCAAC TACCTCAACTCCCTCCGCTTCAAGCAATCCCACTTCCTGACAGACGTCCGTCTCGCCCTTGGCTATGGCGCCTTT TTCATTGCGGCAGCCTCCTTCCTCTGGGACTACCGCCTCGGCTTCGAGACGACCAAAGTGTACACGGCCGTCGCC GTCGCCATCTATGCCGTCGTCAACACCACCCTGACGTTCTGGATCACTCGCGTCGAAAAGGGCACCGTCTATCAG GGCGTTTCCCCTGACGGCGAAGAGCTCTCCATCGCGACAACCGTCACCAAAAACGACCCAACCTACCGCCTCACC GTCACCGTCAAACCCCGCGGTTCCACTCCGCAAGTCATCAAATTCACCGCTCCCTTTGCCACCTTCTTCGACGAG ACCGGTCGCTTCGTCGTCAAGCCCTTCCAGAAGCTATTCGCCTCGTCTGTGCCCCTCGTCGGCAGGCTCGATCCC AAGCGCGCAACAAGCAACAAAATTGCTTCGCAGGACCTTCTCGATGCCGACCCTGATCTTCTGGATGCCGTCCTG GCTGCTGATCCGGCCAAGGTAACCTCGTCTGCTTCGGATGCCAAAACCGGCGGCAAGAGGCGCAAGTCGGCCAAA TAA |
| Transcript | >Ophun1|1491 ATGGCCGCCTCCGAGAAGATCAGCGTCTACAATATCGCTGACCTCAAGAACACGTCCGACGACGCCATCCCCAAC TACCTCAACTCCCTCCGCTTCAAGCAATCCCACTTCCTGACAGACGTCCGTCTCGCCCTTGGCTATGGCGCCTTT TTCATTGCGGCAGCCTCCTTCCTCTGGGACTACCGCCTCGGCTTCGAGACGACCAAAGTGTACACGGCCGTCGCC GTCGCCATCTATGCCGTCGTCAACACCACCCTGACGTTCTGGATCACTCGCGTCGAAAAGGGCACCGTCTATCAG GGCGTTTCCCCTGACGGCGAAGAGCTCTCCATCGCGACAACCGTCACCAAAAACGACCCAACCTACCGCCTCACC GTCACCGTCAAACCCCGCGGTTCCACTCCGCAAGTCATCAAATTCACCGCTCCCTTTGCCACCTTCTTCGACGAG ACCGGTCGCTTCGTCGTCAAGCCCTTCCAGAAGCTATTCGCCTCGTCTGTGCCCCTCGTCGGCAGGCTCGATCCC AAGCGCGCAACAAGCAACAAAATTGCTTCGCAGGACCTTCTCGATGCCGACCCTGATCTTCTGGATGCCGTCCTG GCTGCTGATCCGGCCAAGGTAACCTCGTCTGCTTCGGATGCCAAAACCGGCGGCAAGAGGCGCAAGTCGGCCAAA TAA |
| Gene | >Ophun1|1491 ATGGCCGCCTCCGAGAAGATCAGCGTCTACAATATCGCTGGTAGCTCTCTCTCTCTCCTACTCAAACCACTAACT AAATATCTTTGCCCCAGACTGACTCTTTCCAGACCTCAAGAACACGTCCGACGACGCCATCCCCAACTACCTCAA CTCCCTCCGCTTCAAGCAATCCCACTTCCTGACAGACGTCCGTCTCGCCCTTGGCTATGGCGCCTTTTTCATTGC GGCAGCCTCCTTCCTCTGGGACTACCGCCTCGGCTTCGAGACGACCAAAGTGTACACGGCCGTCGCCGTCGCCAT CTATGCCGTCGTCAACACCACCCTGACGTTCTGGATCACTCGCGTCGAAAAGGGCACCGTCTATCAGGGCGTTTC CCCTGACGGCGAAGAGGTATCACATCTCCTCGCCTTACATGCATCTCTCCATCTTAGCAGTGACTGATTTCTCTC CAGCTCTCCATCGCGACAACCGTCACCAAAAACGACCCAACCTACCGCCTCACCGTCACCGTCAAACCCCGCGGT TCCACTCCGCAAGTCATCAAATTCACCGCTCCCTTTGCCACCTTCTTCGACGAGACCGGTCGCTTCGTCGTCAAG CCCTTCCAGAAGCTATTCGCCTCGTCTGTGCCCCTCGTCGGCAGGCTCGATCCCAAGCGCGCAACAAGCAACAAA ATTGCTTCGCAGGACCTTCTCGATGCCGACCCTGATCTTCTGGATGCCGTCCTGGCTGCTGATCCGGCCAAGGTA ACCTCGTCTGCTTCGGATGCCAAAACCGGCGGCAAGAGGCGCAAGTCGGCCAAATAA |