© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophun1|1442 |
| Gene name | |
| Location | Contig_159:8909..9277 |
| Strand | - |
| Gene length (bp) | 368 |
| Transcript length (bp) | 309 |
| Coding sequence length (bp) | 309 |
| Protein length (aa) | 103 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF05839 | Apc13p | Apc13p protein | 2.5E-33 | 3 | 89 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O74358|APC13_SCHPO | Anaphase-promoting complex subunit 13 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=apc13 PE=1 SV=1 | 4 | 82 | 2.0E-08 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005680 | anaphase-promoting complex | Yes |
| GO:0000152 | nuclear ubiquitin ligase complex | No |
| GO:1990234 | transferase complex | No |
| GO:0031461 | cullin-RING ubiquitin ligase complex | No |
| GO:1902494 | catalytic complex | No |
| GO:0005575 | cellular_component | No |
| GO:0000151 | ubiquitin ligase complex | No |
| GO:0140513 | nuclear protein-containing complex | No |
| GO:0140535 | intracellular protein-containing complex | No |
| GO:0032991 | protein-containing complex | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 19 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophun1|1442 MNKDGTFTYVHMHRSSDADLFDDFCKDALPPDDVYVPPAHRPINPEDEDDVVPDQHAAFGIQRATQRVTEPAWKD LGLADLMRRGPKAQTAAKRPNASRAPR* |
| Coding | >Ophun1|1442 ATGAACAAAGACGGCACCTTTACATACGTGCACATGCACCGCTCCTCAGACGCAGACCTCTTCGACGACTTCTGC AAAGACGCGCTCCCGCCCGACGACGTCTACGTCCCGCCCGCCCACCGGCCCATCAACCCAGAAGACGAGGACGAC GTCGTTCCAGACCAGCACGCCGCCTTTGGCATCCAGCGCGCTACTCAGCGCGTCACCGAGCCGGCTTGGAAGGAT CTGGGGCTCGCAGACTTGATGCGTCGCGGGCCGAAGGCGCAGACTGCTGCTAAGCGGCCGAATGCGAGCCGTGCA CCGCGGTGA |
| Transcript | >Ophun1|1442 ATGAACAAAGACGGCACCTTTACATACGTGCACATGCACCGCTCCTCAGACGCAGACCTCTTCGACGACTTCTGC AAAGACGCGCTCCCGCCCGACGACGTCTACGTCCCGCCCGCCCACCGGCCCATCAACCCAGAAGACGAGGACGAC GTCGTTCCAGACCAGCACGCCGCCTTTGGCATCCAGCGCGCTACTCAGCGCGTCACCGAGCCGGCTTGGAAGGAT CTGGGGCTCGCAGACTTGATGCGTCGCGGGCCGAAGGCGCAGACTGCTGCTAAGCGGCCGAATGCGAGCCGTGCA CCGCGGTGA |
| Gene | >Ophun1|1442 ATGGTACGCATCCATCTTCCCACCTCCGAAACCTACCCTAGACACATGCCTAACCTCAGCAGAACAAAGACGGCA CCTTTACATACGTGCACATGCACCGCTCCTCAGACGCAGACCTCTTCGACGACTTCTGCAAAGACGCGCTCCCGC CCGACGACGTCTACGTCCCGCCCGCCCACCGGCCCATCAACCCAGAAGACGAGGACGACGTCGTTCCAGACCAGC ACGCCGCCTTTGGCATCCAGCGCGCTACTCAGCGCGTCACCGAGCCGGCTTGGAAGGATCTGGGGCTCGCAGACT TGATGCGTCGCGGGCCGAAGGCGCAGACTGCTGCTAAGCGGCCGAATGCGAGCCGTGCACCGCGGTGA |