Fungal Genomics

at Utrecht University

General Properties

Protein IDOphun1|1431
Gene name
LocationContig_158:23554..24881
Strand-
Gene length (bp)1327
Transcript length (bp)978
Coding sequence length (bp)978
Protein length (aa) 326

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF02269 TFIID-18kDa Transcription initiation factor IID, 18kD subunit 8.9E-30 11 100

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|O14311|SPT3_SCHPO SAGA complex subunit spt3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=spt3 PE=1 SV=2 4 310 3.0E-89
sp|P06844|SPT3_YEAST Protein SPT3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SPT3 PE=1 SV=1 10 316 2.0E-87
sp|O13472|SPT3_KLULA Protein SPT3 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=SPT3 PE=3 SV=1 7 322 5.0E-83
sp|O75486|SUPT3_HUMAN Transcription initiation protein SPT3 homolog OS=Homo sapiens GN=SUPT3H PE=1 SV=2 2 303 6.0E-26
sp|Q6NQH4|TAF13_ARATH Transcription initiation factor TFIID subunit 13 OS=Arabidopsis thaliana GN=TAF13 PE=1 SV=1 12 101 9.0E-08

GO

GO Term Description Terminal node
GO:0006366 transcription by RNA polymerase II Yes
GO:0032774 RNA biosynthetic process No
GO:0044237 cellular metabolic process No
GO:0044238 primary metabolic process No
GO:0009987 cellular process No
GO:0009058 biosynthetic process No
GO:0008152 metabolic process No
GO:0097659 nucleic acid-templated transcription No
GO:0034654 nucleobase-containing compound biosynthetic process No
GO:1901362 organic cyclic compound biosynthetic process No
GO:0044271 cellular nitrogen compound biosynthetic process No
GO:1901576 organic substance biosynthetic process No
GO:0006725 cellular aromatic compound metabolic process No
GO:0006139 nucleobase-containing compound metabolic process No
GO:0043170 macromolecule metabolic process No
GO:0006807 nitrogen compound metabolic process No
GO:0090304 nucleic acid metabolic process No
GO:0018130 heterocycle biosynthetic process No
GO:0044249 cellular biosynthetic process No
GO:0034641 cellular nitrogen compound metabolic process No
GO:0019438 aromatic compound biosynthetic process No
GO:0046483 heterocycle metabolic process No
GO:0008150 biological_process No
GO:0009059 macromolecule biosynthetic process No
GO:1901360 organic cyclic compound metabolic process No
GO:0071704 organic substance metabolic process No
GO:0006351 transcription, DNA-templated No
GO:0016070 RNA metabolic process No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 42 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophun1|1431
MAEGRDSKAYKYRQEISQMMYVSGETAEPSVETTSIIEDIVRQQVIELLRNCTELASRRGSKSISTNDLIFQIRH
DQAKVSRLRTFLSWKDVRKNVKDSEDKGAEADLAAGDDPVGGVVPGGGPVVDEAAKKNKKAKVGLPWEPASFFPV
EVPERDDEDDEEEDEMNYITLQRLRKADERTKVMTREEYVTWSEYRQASFTWRKGKRFREWAGFGIVTDSKPSDD
IVDILGFLTFEMVATLTEVALKFKEQEDLARAQSGPAADSLGAKKRKRLQGLFDPPSEGKTPIEPRHVQEAFRRF
QQRPKKGRAMLNGTRLLQHTPLNII*
Coding >Ophun1|1431
ATGGCCGAGGGACGAGACAGCAAGGCGTACAAGTATCGCCAGGAGATTAGCCAGATGATGTATGTTTCAGGCGAG
ACGGCAGAACCTTCAGTCGAAACCACAAGCATCATCGAAGACATCGTTCGTCAGCAAGTCATTGAACTGCTTCGA
AATTGCACAGAGCTAGCCTCAAGACGAGGCTCCAAATCCATCAGCACAAACGACCTCATCTTCCAAATCCGCCAC
GACCAAGCCAAAGTCTCCCGCCTCCGCACCTTTCTCTCCTGGAAAGACGTGCGCAAAAACGTCAAAGACTCGGAA
GACAAGGGCGCAGAAGCCGACCTCGCAGCCGGCGATGATCCCGTCGGCGGCGTCGTTCCTGGTGGTGGTCCCGTC
GTCGACGAGGCCGCCAAGAAGAACAAAAAGGCAAAGGTCGGCCTTCCCTGGGAACCAGCCTCGTTCTTCCCCGTC
GAGGTCCCCGAACGCGACGATGAAGACGACGAAGAGGAAGATGAGATGAATTACATCACCCTCCAGCGTCTCCGC
AAGGCCGATGAGCGCACAAAAGTCATGACCAGAGAGGAATACGTCACCTGGTCCGAATACCGCCAGGCCTCCTTC
ACCTGGCGCAAAGGCAAACGCTTCCGCGAATGGGCAGGCTTCGGCATCGTCACAGACAGCAAACCATCCGACGAC
ATCGTCGACATCCTCGGCTTCCTCACCTTCGAAATGGTGGCCACCCTCACAGAGGTAGCCCTCAAGTTCAAAGAG
CAGGAGGACCTAGCCCGCGCCCAGTCCGGCCCAGCGGCAGACTCCCTCGGCGCCAAGAAGCGCAAGCGTCTTCAG
GGCCTCTTCGATCCCCCCAGCGAGGGGAAGACGCCTATTGAGCCGCGACATGTGCAGGAGGCCTTTCGCAGGTTT
CAGCAGAGGCCCAAGAAGGGGCGTGCTATGCTCAACGGCACCAGACTGCTGCAGCATACGCCTCTCAACATCATC
TAA
Transcript >Ophun1|1431
ATGGCCGAGGGACGAGACAGCAAGGCGTACAAGTATCGCCAGGAGATTAGCCAGATGATGTATGTTTCAGGCGAG
ACGGCAGAACCTTCAGTCGAAACCACAAGCATCATCGAAGACATCGTTCGTCAGCAAGTCATTGAACTGCTTCGA
AATTGCACAGAGCTAGCCTCAAGACGAGGCTCCAAATCCATCAGCACAAACGACCTCATCTTCCAAATCCGCCAC
GACCAAGCCAAAGTCTCCCGCCTCCGCACCTTTCTCTCCTGGAAAGACGTGCGCAAAAACGTCAAAGACTCGGAA
GACAAGGGCGCAGAAGCCGACCTCGCAGCCGGCGATGATCCCGTCGGCGGCGTCGTTCCTGGTGGTGGTCCCGTC
GTCGACGAGGCCGCCAAGAAGAACAAAAAGGCAAAGGTCGGCCTTCCCTGGGAACCAGCCTCGTTCTTCCCCGTC
GAGGTCCCCGAACGCGACGATGAAGACGACGAAGAGGAAGATGAGATGAATTACATCACCCTCCAGCGTCTCCGC
AAGGCCGATGAGCGCACAAAAGTCATGACCAGAGAGGAATACGTCACCTGGTCCGAATACCGCCAGGCCTCCTTC
ACCTGGCGCAAAGGCAAACGCTTCCGCGAATGGGCAGGCTTCGGCATCGTCACAGACAGCAAACCATCCGACGAC
ATCGTCGACATCCTCGGCTTCCTCACCTTCGAAATGGTGGCCACCCTCACAGAGGTAGCCCTCAAGTTCAAAGAG
CAGGAGGACCTAGCCCGCGCCCAGTCCGGCCCAGCGGCAGACTCCCTCGGCGCCAAGAAGCGCAAGCGTCTTCAG
GGCCTCTTCGATCCCCCCAGCGAGGGGAAGACGCCTATTGAGCCGCGACATGTGCAGGAGGCCTTTCGCAGGTTT
CAGCAGAGGCCCAAGAAGGGGCGTGCTATGCTCAACGGCACCAGACTGCTGCAGCATACGCCTCTCAACATCATC
TAA
Gene >Ophun1|1431
ATGGCCGAGGGACGAGACAGCAAGGCGTACAAGTATCGCCAGGAGATTAGCCAGGTGAATATCCCCCTCCATTGT
CCTTGTGCTTTGCGTATCAAATCCAGGTCCCGTCGAAATGCGTTGCCAGAACGAGCTGGGAACCGCCTCTGCGAA
TGGCTGCTGCCGAACATCCGCCGCTGTTTACCGCAGCCCGCCTGACCAGGCAACGGCGCGCCCACCTTGCCAGCT
GCTGTCGATTTTCGACGCGCTTCGATGCGTTTCTTGCAAGTCCAAACTGCTGTCAACAACATGCCCACGTTGAAA
AGGGACGAGAAGACCAGGCGCATGCTAATGGAAACAATCGCGCAGATGATGTATGTTTCAGGCGAGACGGCAGAA
CCTTCAGTCGAAACCACAAGCATCATCGAAGACATCGTTCGTCAGCAAGTCATTGAACTGGTAAGTCCACCCTCT
CGCAGCAAACTCACAAACCCAGCTAACGCCGCGCGTCCTCAAGCTTCGAAATTGCACAGAGCTAGCCTCAAGACG
AGGCTCCAAATCCATCAGCACAAACGACCTCATCTTCCAAATCCGCCACGACCAAGCCAAAGTCTCCCGCCTCCG
CACCTTTCTCTCCTGGAAAGACGTGCGCAAAAACGTCAAAGACTCGGAAGACAAGGGCGCAGAAGCCGACCTCGC
AGCCGGCGATGATCCCGTCGGCGGCGTCGTTCCTGGTGGTGGTCCCGTCGTCGACGAGGCCGCCAAGAAGAACAA
AAAGGCAAAGGTCGGCCTTCCCTGGGAACCAGCCTCGTTCTTCCCCGTCGAGGTCCCCGAACGCGACGATGAAGA
CGACGAAGAGGAAGATGAGATGAATTACATCACCCTCCAGCGTCTCCGCAAGGCCGATGAGCGCACAAAAGTCAT
GACCAGAGAGGAATACGTCACCTGGTCCGAATACCGCCAGGCCTCCTTCACCTGGCGCAAAGGCAAACGCTTCCG
CGAATGGGCAGGCTTCGGCATCGTCACAGACAGCAAACCATCCGACGACATCGTCGACATCCTCGGCTTCCTCAC
CTTCGAAATGGTGGCCACCCTCACAGAGGTAGCCCTCAAGTTCAAAGAGCAGGAGGACCTAGCCCGCGCCCAGTC
CGGCCCAGCGGCAGACTCCCTCGGCGCCAAGAAGCGCAAGCGTCTTCAGGGCCTCTTCGATCCCCCCAGCGAGGG
GAAGACGCCTATTGAGCCGCGACATGTGCAGGAGGCCTTTCGCAGGTTTCAGCAGAGGCCCAAGAAGGGGCGTGC
TATGCTCAACGGCACCAGACTGCTGCAGCATACGCCTCTCAACATCATCTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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