© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophun1|1431 |
| Gene name | |
| Location | Contig_158:23554..24881 |
| Strand | - |
| Gene length (bp) | 1327 |
| Transcript length (bp) | 978 |
| Coding sequence length (bp) | 978 |
| Protein length (aa) | 326 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02269 | TFIID-18kDa | Transcription initiation factor IID, 18kD subunit | 8.9E-30 | 11 | 100 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O14311|SPT3_SCHPO | SAGA complex subunit spt3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=spt3 PE=1 SV=2 | 4 | 310 | 3.0E-89 |
| sp|P06844|SPT3_YEAST | Protein SPT3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SPT3 PE=1 SV=1 | 10 | 316 | 2.0E-87 |
| sp|O13472|SPT3_KLULA | Protein SPT3 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=SPT3 PE=3 SV=1 | 7 | 322 | 5.0E-83 |
| sp|O75486|SUPT3_HUMAN | Transcription initiation protein SPT3 homolog OS=Homo sapiens GN=SUPT3H PE=1 SV=2 | 2 | 303 | 6.0E-26 |
| sp|Q6NQH4|TAF13_ARATH | Transcription initiation factor TFIID subunit 13 OS=Arabidopsis thaliana GN=TAF13 PE=1 SV=1 | 12 | 101 | 9.0E-08 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006366 | transcription by RNA polymerase II | Yes |
| GO:0032774 | RNA biosynthetic process | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0009987 | cellular process | No |
| GO:0009058 | biosynthetic process | No |
| GO:0008152 | metabolic process | No |
| GO:0097659 | nucleic acid-templated transcription | No |
| GO:0034654 | nucleobase-containing compound biosynthetic process | No |
| GO:1901362 | organic cyclic compound biosynthetic process | No |
| GO:0044271 | cellular nitrogen compound biosynthetic process | No |
| GO:1901576 | organic substance biosynthetic process | No |
| GO:0006725 | cellular aromatic compound metabolic process | No |
| GO:0006139 | nucleobase-containing compound metabolic process | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0090304 | nucleic acid metabolic process | No |
| GO:0018130 | heterocycle biosynthetic process | No |
| GO:0044249 | cellular biosynthetic process | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| GO:0019438 | aromatic compound biosynthetic process | No |
| GO:0046483 | heterocycle metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0009059 | macromolecule biosynthetic process | No |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0006351 | transcription, DNA-templated | No |
| GO:0016070 | RNA metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 42 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophun1|1431 MAEGRDSKAYKYRQEISQMMYVSGETAEPSVETTSIIEDIVRQQVIELLRNCTELASRRGSKSISTNDLIFQIRH DQAKVSRLRTFLSWKDVRKNVKDSEDKGAEADLAAGDDPVGGVVPGGGPVVDEAAKKNKKAKVGLPWEPASFFPV EVPERDDEDDEEEDEMNYITLQRLRKADERTKVMTREEYVTWSEYRQASFTWRKGKRFREWAGFGIVTDSKPSDD IVDILGFLTFEMVATLTEVALKFKEQEDLARAQSGPAADSLGAKKRKRLQGLFDPPSEGKTPIEPRHVQEAFRRF QQRPKKGRAMLNGTRLLQHTPLNII* |
| Coding | >Ophun1|1431 ATGGCCGAGGGACGAGACAGCAAGGCGTACAAGTATCGCCAGGAGATTAGCCAGATGATGTATGTTTCAGGCGAG ACGGCAGAACCTTCAGTCGAAACCACAAGCATCATCGAAGACATCGTTCGTCAGCAAGTCATTGAACTGCTTCGA AATTGCACAGAGCTAGCCTCAAGACGAGGCTCCAAATCCATCAGCACAAACGACCTCATCTTCCAAATCCGCCAC GACCAAGCCAAAGTCTCCCGCCTCCGCACCTTTCTCTCCTGGAAAGACGTGCGCAAAAACGTCAAAGACTCGGAA GACAAGGGCGCAGAAGCCGACCTCGCAGCCGGCGATGATCCCGTCGGCGGCGTCGTTCCTGGTGGTGGTCCCGTC GTCGACGAGGCCGCCAAGAAGAACAAAAAGGCAAAGGTCGGCCTTCCCTGGGAACCAGCCTCGTTCTTCCCCGTC GAGGTCCCCGAACGCGACGATGAAGACGACGAAGAGGAAGATGAGATGAATTACATCACCCTCCAGCGTCTCCGC AAGGCCGATGAGCGCACAAAAGTCATGACCAGAGAGGAATACGTCACCTGGTCCGAATACCGCCAGGCCTCCTTC ACCTGGCGCAAAGGCAAACGCTTCCGCGAATGGGCAGGCTTCGGCATCGTCACAGACAGCAAACCATCCGACGAC ATCGTCGACATCCTCGGCTTCCTCACCTTCGAAATGGTGGCCACCCTCACAGAGGTAGCCCTCAAGTTCAAAGAG CAGGAGGACCTAGCCCGCGCCCAGTCCGGCCCAGCGGCAGACTCCCTCGGCGCCAAGAAGCGCAAGCGTCTTCAG GGCCTCTTCGATCCCCCCAGCGAGGGGAAGACGCCTATTGAGCCGCGACATGTGCAGGAGGCCTTTCGCAGGTTT CAGCAGAGGCCCAAGAAGGGGCGTGCTATGCTCAACGGCACCAGACTGCTGCAGCATACGCCTCTCAACATCATC TAA |
| Transcript | >Ophun1|1431 ATGGCCGAGGGACGAGACAGCAAGGCGTACAAGTATCGCCAGGAGATTAGCCAGATGATGTATGTTTCAGGCGAG ACGGCAGAACCTTCAGTCGAAACCACAAGCATCATCGAAGACATCGTTCGTCAGCAAGTCATTGAACTGCTTCGA AATTGCACAGAGCTAGCCTCAAGACGAGGCTCCAAATCCATCAGCACAAACGACCTCATCTTCCAAATCCGCCAC GACCAAGCCAAAGTCTCCCGCCTCCGCACCTTTCTCTCCTGGAAAGACGTGCGCAAAAACGTCAAAGACTCGGAA GACAAGGGCGCAGAAGCCGACCTCGCAGCCGGCGATGATCCCGTCGGCGGCGTCGTTCCTGGTGGTGGTCCCGTC GTCGACGAGGCCGCCAAGAAGAACAAAAAGGCAAAGGTCGGCCTTCCCTGGGAACCAGCCTCGTTCTTCCCCGTC GAGGTCCCCGAACGCGACGATGAAGACGACGAAGAGGAAGATGAGATGAATTACATCACCCTCCAGCGTCTCCGC AAGGCCGATGAGCGCACAAAAGTCATGACCAGAGAGGAATACGTCACCTGGTCCGAATACCGCCAGGCCTCCTTC ACCTGGCGCAAAGGCAAACGCTTCCGCGAATGGGCAGGCTTCGGCATCGTCACAGACAGCAAACCATCCGACGAC ATCGTCGACATCCTCGGCTTCCTCACCTTCGAAATGGTGGCCACCCTCACAGAGGTAGCCCTCAAGTTCAAAGAG CAGGAGGACCTAGCCCGCGCCCAGTCCGGCCCAGCGGCAGACTCCCTCGGCGCCAAGAAGCGCAAGCGTCTTCAG GGCCTCTTCGATCCCCCCAGCGAGGGGAAGACGCCTATTGAGCCGCGACATGTGCAGGAGGCCTTTCGCAGGTTT CAGCAGAGGCCCAAGAAGGGGCGTGCTATGCTCAACGGCACCAGACTGCTGCAGCATACGCCTCTCAACATCATC TAA |
| Gene | >Ophun1|1431 ATGGCCGAGGGACGAGACAGCAAGGCGTACAAGTATCGCCAGGAGATTAGCCAGGTGAATATCCCCCTCCATTGT CCTTGTGCTTTGCGTATCAAATCCAGGTCCCGTCGAAATGCGTTGCCAGAACGAGCTGGGAACCGCCTCTGCGAA TGGCTGCTGCCGAACATCCGCCGCTGTTTACCGCAGCCCGCCTGACCAGGCAACGGCGCGCCCACCTTGCCAGCT GCTGTCGATTTTCGACGCGCTTCGATGCGTTTCTTGCAAGTCCAAACTGCTGTCAACAACATGCCCACGTTGAAA AGGGACGAGAAGACCAGGCGCATGCTAATGGAAACAATCGCGCAGATGATGTATGTTTCAGGCGAGACGGCAGAA CCTTCAGTCGAAACCACAAGCATCATCGAAGACATCGTTCGTCAGCAAGTCATTGAACTGGTAAGTCCACCCTCT CGCAGCAAACTCACAAACCCAGCTAACGCCGCGCGTCCTCAAGCTTCGAAATTGCACAGAGCTAGCCTCAAGACG AGGCTCCAAATCCATCAGCACAAACGACCTCATCTTCCAAATCCGCCACGACCAAGCCAAAGTCTCCCGCCTCCG CACCTTTCTCTCCTGGAAAGACGTGCGCAAAAACGTCAAAGACTCGGAAGACAAGGGCGCAGAAGCCGACCTCGC AGCCGGCGATGATCCCGTCGGCGGCGTCGTTCCTGGTGGTGGTCCCGTCGTCGACGAGGCCGCCAAGAAGAACAA AAAGGCAAAGGTCGGCCTTCCCTGGGAACCAGCCTCGTTCTTCCCCGTCGAGGTCCCCGAACGCGACGATGAAGA CGACGAAGAGGAAGATGAGATGAATTACATCACCCTCCAGCGTCTCCGCAAGGCCGATGAGCGCACAAAAGTCAT GACCAGAGAGGAATACGTCACCTGGTCCGAATACCGCCAGGCCTCCTTCACCTGGCGCAAAGGCAAACGCTTCCG CGAATGGGCAGGCTTCGGCATCGTCACAGACAGCAAACCATCCGACGACATCGTCGACATCCTCGGCTTCCTCAC CTTCGAAATGGTGGCCACCCTCACAGAGGTAGCCCTCAAGTTCAAAGAGCAGGAGGACCTAGCCCGCGCCCAGTC CGGCCCAGCGGCAGACTCCCTCGGCGCCAAGAAGCGCAAGCGTCTTCAGGGCCTCTTCGATCCCCCCAGCGAGGG GAAGACGCCTATTGAGCCGCGACATGTGCAGGAGGCCTTTCGCAGGTTTCAGCAGAGGCCCAAGAAGGGGCGTGC TATGCTCAACGGCACCAGACTGCTGCAGCATACGCCTCTCAACATCATCTAA |