© 2023 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Ophun1|1423 |
| Gene name | |
| Location | Contig_158:9145..9905 |
| Strand | - |
| Gene length (bp) | 760 |
| Transcript length (bp) | 252 |
| Coding sequence length (bp) | 252 |
| Protein length (aa) | 84 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01667 | Ribosomal_S27e | Ribosomal protein S27 | 5.0E-28 | 29 | 83 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q7RVN2|RS27_NEUCR | 40S ribosomal protein S27 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=crp-6 PE=3 SV=1 | 3 | 83 | 4.0E-52 |
| sp|O74330|RS27_SCHPO | 40S ribosomal protein S27 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rps27 PE=3 SV=1 | 3 | 83 | 4.0E-43 |
| sp|P38711|RS27B_YEAST | 40S ribosomal protein S27-B OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPS27B PE=1 SV=1 | 3 | 83 | 2.0E-38 |
| sp|P55833|RS27_HOMAM | 40S ribosomal protein S27 OS=Homarus americanus GN=RPS27 PE=3 SV=2 | 4 | 83 | 3.0E-38 |
| sp|P35997|RS27_YEAST | 40S ribosomal protein S27-A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPS27A PE=1 SV=1 | 3 | 83 | 3.0E-38 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q7RVN2|RS27_NEUCR | 40S ribosomal protein S27 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=crp-6 PE=3 SV=1 | 3 | 83 | 4.0E-52 |
| sp|O74330|RS27_SCHPO | 40S ribosomal protein S27 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rps27 PE=3 SV=1 | 3 | 83 | 4.0E-43 |
| sp|P38711|RS27B_YEAST | 40S ribosomal protein S27-B OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPS27B PE=1 SV=1 | 3 | 83 | 2.0E-38 |
| sp|P55833|RS27_HOMAM | 40S ribosomal protein S27 OS=Homarus americanus GN=RPS27 PE=3 SV=2 | 4 | 83 | 3.0E-38 |
| sp|P35997|RS27_YEAST | 40S ribosomal protein S27-A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPS27A PE=1 SV=1 | 3 | 83 | 3.0E-38 |
| sp|Q9M2F1|RS272_ARATH | 40S ribosomal protein S27-2 OS=Arabidopsis thaliana GN=RPS27B PE=2 SV=2 | 6 | 83 | 7.0E-38 |
| sp|Q8L953|RS273_ARATH | 40S ribosomal protein S27-3 OS=Arabidopsis thaliana GN=RPS27D PE=2 SV=2 | 6 | 83 | 2.0E-37 |
| sp|O64650|RS271_ARATH | 40S ribosomal protein S27-1 OS=Arabidopsis thaliana GN=RPS27A PE=3 SV=1 | 6 | 83 | 6.0E-36 |
| sp|Q9TXP0|RS27_CAEEL | 40S ribosomal protein S27 OS=Caenorhabditis elegans GN=rps-27 PE=1 SV=3 | 4 | 83 | 1.0E-35 |
| sp|Q71TY3|RS27_RAT | 40S ribosomal protein S27 OS=Rattus norvegicus GN=Rps27 PE=1 SV=3 | 4 | 83 | 1.0E-35 |
| sp|Q6ZWU9|RS27_MOUSE | 40S ribosomal protein S27 OS=Mus musculus GN=Rps27 PE=1 SV=3 | 4 | 83 | 1.0E-35 |
| sp|P42677|RS27_HUMAN | 40S ribosomal protein S27 OS=Homo sapiens GN=RPS27 PE=1 SV=3 | 4 | 83 | 1.0E-35 |
| sp|Q2KHT7|RS27_BOVIN | 40S ribosomal protein S27 OS=Bos taurus GN=RPS27 PE=3 SV=3 | 4 | 83 | 1.0E-35 |
| sp|P47904|RS27_XENLA | 40S ribosomal protein S27 OS=Xenopus laevis GN=rps27 PE=3 SV=2 | 4 | 83 | 4.0E-35 |
| sp|Q3T0B7|RS27L_BOVIN | 40S ribosomal protein S27-like OS=Bos taurus GN=RPS27L PE=3 SV=3 | 4 | 83 | 4.0E-35 |
| sp|Q5RBK1|RS27_PONAB | 40S ribosomal protein S27 OS=Pongo abelii GN=RPS27 PE=3 SV=3 | 4 | 83 | 2.0E-34 |
| sp|P24051|RS27L_RAT | 40S ribosomal protein S27-like OS=Rattus norvegicus GN=Rps27l PE=1 SV=3 | 4 | 83 | 5.0E-34 |
| sp|Q6ZWY3|RS27L_MOUSE | 40S ribosomal protein S27-like OS=Mus musculus GN=Rps27l PE=1 SV=3 | 4 | 83 | 5.0E-34 |
| sp|Q71UM5|RS27L_HUMAN | 40S ribosomal protein S27-like OS=Homo sapiens GN=RPS27L PE=1 SV=3 | 4 | 83 | 5.0E-34 |
| sp|Q96564|RS27_HORVU | 40S ribosomal protein S27 OS=Hordeum vulgare GN=RPS27 PE=3 SV=2 | 6 | 83 | 6.0E-33 |
| sp|P47903|RS27_CHLRE | 40S ribosomal protein S27 OS=Chlamydomonas reinhardtii GN=RPS27 PE=3 SV=1 | 6 | 83 | 5.0E-32 |
| sp|Q8T1V4|RS27_DICDI | 40S ribosomal protein S27 OS=Dictyostelium discoideum GN=rps27 PE=3 SV=2 | 7 | 83 | 8.0E-32 |
| sp|P38654|RS27_ENTHI | 40S ribosomal protein S27 OS=Entamoeba histolytica GN=RPS27 PE=3 SV=1 | 1 | 83 | 2.0E-26 |
| sp|B1YAF9|RS27_PYRNV | 30S ribosomal protein S27e OS=Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / V24Sta) GN=rps27e PE=3 SV=1 | 23 | 75 | 9.0E-13 |
| sp|A1RRN0|RS27_PYRIL | 30S ribosomal protein S27e OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189 / GEO3) GN=rps27e PE=3 SV=1 | 23 | 75 | 2.0E-12 |
| sp|A4WLR8|RS27_PYRAR | 30S ribosomal protein S27e OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rps27e PE=3 SV=1 | 23 | 75 | 1.0E-10 |
| sp|Q973F9|RS27_SULTO | 30S ribosomal protein S27e OS=Sulfolobus tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7) GN=rps27e PE=3 SV=1 | 19 | 74 | 1.0E-10 |
| sp|A3MUV2|RS27_PYRCJ | 30S ribosomal protein S27e OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rps27e PE=3 SV=1 | 23 | 72 | 9.0E-10 |
| sp|Q97Z80|RS27_SULSO | 30S ribosomal protein S27e OS=Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=rps27e PE=3 SV=1 | 21 | 75 | 1.0E-09 |
| sp|Q9YF01|RS27_AERPE | 30S ribosomal protein S27e OS=Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=rps27e PE=3 SV=1 | 21 | 74 | 2.0E-09 |
| sp|Q8ZTY4|RS27_PYRAE | 30S ribosomal protein S27e OS=Pyrobaculum aerophilum (strain ATCC 51768 / IM2 / DSM 7523 / JCM 9630 / NBRC 100827) GN=rps27e PE=3 SV=1 | 23 | 74 | 4.0E-09 |
| sp|A2BN94|RS27_HYPBU | 30S ribosomal protein S27e OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403 / PLM1-5) GN=rps27e PE=3 SV=1 | 21 | 74 | 1.0E-08 |
| sp|Q8TY87|RS27_METKA | 30S ribosomal protein S27e OS=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) GN=rps27e PE=3 SV=1 | 18 | 74 | 4.0E-08 |
| sp|C5A6X9|RS27_THEGJ | 30S ribosomal protein S27e OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rps27e PE=3 SV=1 | 23 | 72 | 5.0E-08 |
| sp|Q5JE50|RS27_THEKO | 30S ribosomal protein S27e OS=Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1) GN=rps27e PE=3 SV=1 | 23 | 72 | 7.0E-08 |
| sp|A7I9Q6|RS27_METB6 | 30S ribosomal protein S27e OS=Methanoregula boonei (strain 6A8) GN=rps27e PE=3 SV=1 | 28 | 74 | 1.0E-07 |
| sp|Q9UXZ3|RS27_PYRAB | 30S ribosomal protein S27e OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=rps27e PE=3 SV=1 | 23 | 72 | 1.0E-07 |
| sp|Q8U474|RS27_PYRFU | 30S ribosomal protein S27e OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=rps27e PE=1 SV=1 | 23 | 72 | 3.0E-07 |
| sp|B6YT34|RS27_THEON | 30S ribosomal protein S27e OS=Thermococcus onnurineus (strain NA1) GN=rps27e PE=3 SV=1 | 23 | 72 | 3.0E-07 |
| sp|P58078|RS27_PYRHO | 30S ribosomal protein S27e OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=rps27e PE=3 SV=1 | 23 | 72 | 3.0E-07 |
| sp|P54028|RS27_METJA | 30S ribosomal protein S27e OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=rps27e PE=3 SV=1 | 22 | 74 | 3.0E-07 |
| sp|A2ST12|RS27_METLZ | 30S ribosomal protein S27e OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rps27e PE=3 SV=1 | 30 | 74 | 5.0E-07 |
| sp|Q4J9B1|RS27_SULAC | 30S ribosomal protein S27e OS=Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770) GN=rps27e PE=3 SV=1 | 19 | 81 | 7.0E-07 |
| sp|A3CX76|RS27_METMJ | 30S ribosomal protein S27e OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rps27e PE=3 SV=1 | 30 | 74 | 8.0E-07 |
| sp|B8GGQ3|RS27_METPE | 30S ribosomal protein S27e OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=rps27e PE=3 SV=1 | 25 | 74 | 3.0E-06 |
| sp|Q9HRT7|RS27_HALSA | 30S ribosomal protein S27e OS=Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1) GN=rps27e PE=3 SV=1 | 33 | 74 | 9.0E-06 |
| sp|B0R3M1|RS27_HALS3 | 30S ribosomal protein S27e OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rps27e PE=3 SV=1 | 33 | 74 | 9.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003735 | structural constituent of ribosome | Yes |
| GO:0006412 | translation | Yes |
| GO:0005840 | ribosome | Yes |
| GO:0043043 | peptide biosynthetic process | No |
| GO:0043226 | organelle | No |
| GO:0043229 | intracellular organelle | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:1901576 | organic substance biosynthetic process | No |
| GO:0044271 | cellular nitrogen compound biosynthetic process | No |
| GO:0044260 | cellular macromolecule metabolic process | No |
| GO:0019538 | protein metabolic process | No |
| GO:0006518 | peptide metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0009058 | biosynthetic process | No |
| GO:0009987 | cellular process | No |
| GO:0005198 | structural molecule activity | No |
| GO:0044238 | primary metabolic process | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0043232 | intracellular non-membrane-bounded organelle | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0043228 | non-membrane-bounded organelle | No |
| GO:0005575 | cellular_component | No |
| GO:0044249 | cellular biosynthetic process | No |
| GO:0003674 | molecular_function | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| GO:1901564 | organonitrogen compound metabolic process | No |
| GO:1901566 | organonitrogen compound biosynthetic process | No |
| GO:0008150 | biological_process | No |
| GO:0009059 | macromolecule biosynthetic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0034645 | cellular macromolecule biosynthetic process | No |
| GO:0043604 | amide biosynthetic process | No |
| GO:0043603 | cellular amide metabolic process | No |
| Orthofinder run ID | 4 |
| Orthogroup | 3872 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophun1|1423 MRVLAVDLLNPSPAAEARKYKLKTLVPAPRSFFMDVKCPGCFTITTVFSHAQTVVICQGCTTVLCQPTGGKARLT EGCSFRRK* |
| Coding | >Ophun1|1423 ATGCGGGTTCTCGCCGTCGATCTTCTCAACCCTTCGCCGGCTGCCGAGGCCAGAAAGTACAAGCTCAAGACGCTG GTGCCCGCCCCCCGGTCCTTCTTCATGGACGTCAAGTGCCCCGGCTGCTTCACCATCACCACCGTCTTCTCGCAC GCGCAGACGGTTGTCATCTGCCAGGGTTGCACCACGGTGCTGTGCCAGCCGACAGGCGGCAAGGCCAGATTAACC GAGGGCTGCTCGTTCCGGAGAAAGTAA |
| Transcript | >Ophun1|1423 ATGCGGGTTCTCGCCGTCGATCTTCTCAACCCTTCGCCGGCTGCCGAGGCCAGAAAGTACAAGCTCAAGACGCTG GTGCCCGCCCCCCGGTCCTTCTTCATGGACGTCAAGTGCCCCGGCTGCTTCACCATCACCACCGTCTTCTCGCAC GCGCAGACGGTTGTCATCTGCCAGGGTTGCACCACGGTGCTGTGCCAGCCGACAGGCGGCAAGGCCAGATTAACC GAGGGCTGCTCGTTCCGGAGAAAGTAA |
| Gene | >Ophun1|1423 ATGCGGGTACGTACCGCGGTTGGGCGGGTAACGGCACAGCCAATCAAAAGAGCAGAATTTAGTCACGTGTAATTG GGCCTGTAAGCCCTACTGCGCTAGTCTGTTTCAGACCAGTTTTCCCAGCCGGAGGCGAAAGGGCGTGAAACTTTT ACTCTTCAACTCCTCTTCATCTTGCGAGCCCTGAATCTGCAGACAGATTTCGACAAGCATCTCCATCCTCGCAAG ATACCGACTGCCTCACGCTATCGATACACACTGTCAAAATGGTGAGCGGCCAACGACACCTTACCTGCTCTCTGC GCGGACGAAACATGGGTCGGGATTTGTGCGGAGCGGCGATGGCCAACGAGACATTGGCCGTGCCTCTGAACGAAC GCCAAATTTCAGCGATGGACTCGAGCCCGGCTGAAGGAAGCGATTGATGCGTGAACTAGCCTTGCTAACGTTGTG CTCTCCGTAGGTTCTCGCCGTCGATCTTCTCAACCCTTCGCCGGCTGCCGAGGCCAGAAAGTACAAGCTCAAGGT ACGAGGTCGATGAGCAGCGCGCGAAGGACAATGCCTAATTCAGACGCCGCAGACGCTGGTGCCCGCCCCCCGGTC CTTCTTCATGGACGTCAAGTGCCCCGGCTGCTTCACCATCACCACCGTCTTCTCGCACGCGCAGACGGTTGTCAT CTGCCAGGGTTGCACCACGGTGCTGTGCCAGCCGACAGGCGGCAAGGCCAGATTAACCGAGGGCTGCTCGTTCCG GAGAAAGTAA |