Fungal Genomics

at Utrecht University

General Properties

Protein IDOphun1|139
Gene name
LocationContig_1013:80..705
Strand-
Gene length (bp)625
Transcript length (bp)456
Coding sequence length (bp)456
Protein length (aa) 152

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF14821 Thr_synth_N Threonine synthase N terminus 7.2E-27 15 92

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q42598|THRC_SCHPO Threonine synthase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=thrc PE=1 SV=1 15 146 3.0E-46
sp|P16120|THRC_YEAST Threonine synthase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=THR4 PE=1 SV=1 13 143 9.0E-42
sp|Q00063|THRC_ASHGO Threonine synthase OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=THR4 PE=3 SV=1 13 144 5.0E-40
sp|Q5XH07|THNS2_XENLA Threonine synthase-like 2 OS=Xenopus laevis GN=thnsl2 PE=2 SV=1 16 144 1.0E-30
sp|P29363|THRC_PSEAE Threonine synthase OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=thrC PE=3 SV=3 16 144 1.0E-29
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Swissprot ID Swissprot Description Start End E-value
sp|Q42598|THRC_SCHPO Threonine synthase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=thrc PE=1 SV=1 15 146 3.0E-46
sp|P16120|THRC_YEAST Threonine synthase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=THR4 PE=1 SV=1 13 143 9.0E-42
sp|Q00063|THRC_ASHGO Threonine synthase OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=THR4 PE=3 SV=1 13 144 5.0E-40
sp|Q5XH07|THNS2_XENLA Threonine synthase-like 2 OS=Xenopus laevis GN=thnsl2 PE=2 SV=1 16 144 1.0E-30
sp|P29363|THRC_PSEAE Threonine synthase OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=thrC PE=3 SV=3 16 144 1.0E-29
sp|P37145|THRC_METGL Threonine synthase OS=Methylobacillus glycogenes GN=thrC PE=3 SV=1 16 144 7.0E-27
sp|Q2YDP8|THNS2_DANRE Threonine synthase-like 2 OS=Danio rerio GN=thnsl2 PE=2 SV=1 16 144 6.0E-26
sp|Q80W22|THNS2_MOUSE Threonine synthase-like 2 OS=Mus musculus GN=Thnsl2 PE=1 SV=1 16 144 2.0E-25
sp|Q5RFE6|THNS2_PONAB Threonine synthase-like 2 OS=Pongo abelii GN=THNSL2 PE=2 SV=1 16 144 1.0E-23
sp|Q86YJ6|THNS2_HUMAN Threonine synthase-like 2 OS=Homo sapiens GN=THNSL2 PE=2 SV=3 16 144 5.0E-23
sp|Q5M7T9|THNS2_RAT Threonine synthase-like 2 OS=Rattus norvegicus GN=Thnsl2 PE=2 SV=1 16 144 1.0E-22
sp|P23669|THRC_CORGL Threonine synthase OS=Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / JCM 1318 / LMG 3730 / NCIMB 10025) GN=thrC PE=1 SV=2 16 144 1.0E-22
sp|Q5R5P3|THNS1_PONAB Threonine synthase-like 1 OS=Pongo abelii GN=THNSL1 PE=2 SV=1 13 139 2.0E-18
sp|Q8IYQ7|THNS1_HUMAN Threonine synthase-like 1 OS=Homo sapiens GN=THNSL1 PE=1 SV=2 13 139 2.0E-17
sp|Q9BH05|THNS1_MACFA Threonine synthase-like 1 OS=Macaca fascicularis GN=THNSL1 PE=2 SV=1 13 139 3.0E-17
sp|Q8BH55|THNS1_MOUSE Threonine synthase-like 1 OS=Mus musculus GN=Thnsl1 PE=1 SV=1 28 139 1.0E-16
sp|P44503|THRC_HAEIN Threonine synthase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=thrC PE=3 SV=1 23 132 7.0E-11
sp|Q9ZMX5|THRC_HELPJ Threonine synthase OS=Helicobacter pylori (strain J99 / ATCC 700824) GN=thrC PE=3 SV=1 26 144 2.0E-10
sp|Q89AR5|THRC_BUCBP Threonine synthase OS=Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp) GN=thrC PE=3 SV=1 20 143 2.0E-10
sp|O24924|THRC_HELPY Threonine synthase OS=Helicobacter pylori (strain ATCC 700392 / 26695) GN=thrC PE=3 SV=1 16 144 4.0E-10
sp|P27735|THRC_SERMA Threonine synthase OS=Serratia marcescens GN=thrC PE=3 SV=1 23 135 3.0E-08
sp|Q8K9V1|THRC_BUCAP Threonine synthase OS=Buchnera aphidicola subsp. Schizaphis graminum (strain Sg) GN=thrC PE=3 SV=1 20 145 1.0E-07
sp|P00934|THRC_ECOLI Threonine synthase OS=Escherichia coli (strain K12) GN=thrC PE=1 SV=1 23 138 8.0E-06
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GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 68 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophun1|139
MSKSASRPNHGPSQTYLSTRGGDDGLSFETVVLKGLAADGGLFLPEEIPLATDWQSWSDLPYADLAFRILSLYIS
TDEIPAHDLKDILTRSYANFRVPEVTPLRPLRDNLYLLELFHGPSYSFKDCALQFLGNLFEYFLVRKNQGKQGRG
E*
Coding >Ophun1|139
ATGTCGAAATCGGCGTCGCGGCCGAATCACGGCCCCTCGCAGACCTACCTCTCCACTAGGGGAGGCGACGATGGC
TTGTCTTTCGAAACCGTCGTCCTCAAGGGACTCGCTGCCGATGGCGGCCTCTTCCTACCCGAGGAGATTCCCCTC
GCTACCGATTGGCAAAGTTGGAGCGACCTACCCTACGCCGACTTGGCCTTTCGCATCCTCAGCCTCTACATCTCG
ACCGACGAGATTCCCGCCCATGACCTGAAGGATATCCTCACTCGCAGTTACGCCAATTTCCGAGTCCCCGAAGTC
ACCCCCCTGAGGCCGTTGCGCGACAACCTCTACCTCCTCGAGCTCTTTCACGGACCGAGCTATTCCTTCAAGGAC
TGTGCTCTGCAATTTCTCGGCAACCTCTTTGAGTACTTCCTCGTGCGCAAGAACCAGGGGAAACAAGGGAGAGGC
GAGTAA
Transcript >Ophun1|139
ATGTCGAAATCGGCGTCGCGGCCGAATCACGGCCCCTCGCAGACCTACCTCTCCACTAGGGGAGGCGACGATGGC
TTGTCTTTCGAAACCGTCGTCCTCAAGGGACTCGCTGCCGATGGCGGCCTCTTCCTACCCGAGGAGATTCCCCTC
GCTACCGATTGGCAAAGTTGGAGCGACCTACCCTACGCCGACTTGGCCTTTCGCATCCTCAGCCTCTACATCTCG
ACCGACGAGATTCCCGCCCATGACCTGAAGGATATCCTCACTCGCAGTTACGCCAATTTCCGAGTCCCCGAAGTC
ACCCCCCTGAGGCCGTTGCGCGACAACCTCTACCTCCTCGAGCTCTTTCACGGACCGAGCTATTCCTTCAAGGAC
TGTGCTCTGCAATTTCTCGGCAACCTCTTTGAGTACTTCCTCGTGCGCAAGAACCAGGGGAAACAAGGGAGAGGC
GAGTAA
Gene >Ophun1|139
ATGTCGAAATCGGCGTCGCGGCCGAATCACGGCCCCTCGCAGACCTACCTCTCCACTAGGGGAGGCGACGATGGC
GTACGCCTTGCCTGTCCTCGTCCTGTCTTCGTCTCCTCGTCGCTAAACAGCTTCAGTTGTCTTTCGAAACCGTCG
TCCTCAAGGGACTCGCTGCCGATGGCGGCCTCTTCCTACCCGAGGAGATTCCCCTCGCTACCGATTGGGTTCGCC
ATCCCTGTCTGCTCTCTCTCTCTCTCCGCGCTGACGCCATGGTCCCTGCAGCAAAGTTGGAGCGACCTACCCTAC
GCCGACTTGGCCTTTCGCATCCTCAGCCTCTACATCTCGACCGACGAGATTCCCGCCCATGACCTGAAGGATATC
CTCACTCGCAGTTACGCCAATTTCCGAGTCCCCGAAGTCACCCCCCTGAGGCCGTTGCGCGACAACCTCTACCTC
CTCGAGCTCTTTCACGGACCGAGCTATTCCTTCAAGGACTGTGCGTCAGGGAACCAGCCGGTGGCGGCCGTCATG
TCGAGCTGACCCGCGTCCAGGTGCTCTGCAATTTCTCGGCAACCTCTTTGAGTACTTCCTCGTGCGCAAGAACCA
GGGGAAACAAGGGAGAGGCGAGTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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