Fungal Genomics

at Utrecht University

General Properties

Protein IDOphun1|1238
Gene name
LocationContig_149:7793..8889
Strand+
Gene length (bp)1096
Transcript length (bp)978
Coding sequence length (bp)978
Protein length (aa) 326

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF05739 SNARE SNARE domain 2.8E-14 269 321
PF11416 Syntaxin-5_N Syntaxin-5 N-terminal, Sly1p-binding domain 7.8E-10 2 23

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|O13644|SED5_SCHPO Integral membrane protein sed5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sed5 PE=3 SV=1 5 324 1.0E-83
sp|Q01590|SED5_YEAST Integral membrane protein SED5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SED5 PE=1 SV=1 5 324 6.0E-60
sp|Q8K1E0|STX5_MOUSE Syntaxin-5 OS=Mus musculus GN=Stx5 PE=1 SV=3 5 308 8.0E-58
sp|Q13190|STX5_HUMAN Syntaxin-5 OS=Homo sapiens GN=STX5 PE=1 SV=2 5 308 3.0E-57
sp|Q08DB5|STX5_BOVIN Syntaxin-5 OS=Bos taurus GN=STX5 PE=2 SV=1 5 308 4.0E-57
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Swissprot ID Swissprot Description Start End E-value
sp|O13644|SED5_SCHPO Integral membrane protein sed5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sed5 PE=3 SV=1 5 324 1.0E-83
sp|Q01590|SED5_YEAST Integral membrane protein SED5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SED5 PE=1 SV=1 5 324 6.0E-60
sp|Q8K1E0|STX5_MOUSE Syntaxin-5 OS=Mus musculus GN=Stx5 PE=1 SV=3 5 308 8.0E-58
sp|Q13190|STX5_HUMAN Syntaxin-5 OS=Homo sapiens GN=STX5 PE=1 SV=2 5 308 3.0E-57
sp|Q08DB5|STX5_BOVIN Syntaxin-5 OS=Bos taurus GN=STX5 PE=2 SV=1 5 308 4.0E-57
sp|Q08851|STX5_RAT Syntaxin-5 OS=Rattus norvegicus GN=Stx5 PE=1 SV=2 5 308 6.0E-57
sp|Q24509|STX5_DROME Syntaxin-5 OS=Drosophila melanogaster GN=Syx5 PE=2 SV=2 1 309 1.0E-54
sp|Q9LK09|SYP32_ARATH Syntaxin-32 OS=Arabidopsis thaliana GN=SYP32 PE=2 SV=1 59 322 6.0E-48
sp|Q9FFK1|SYP31_ARATH Syntaxin-31 OS=Arabidopsis thaliana GN=SYP31 PE=1 SV=1 3 322 1.0E-42
sp|Q20797|STX5_CAEEL Putative syntaxin-5 OS=Caenorhabditis elegans GN=syx-5 PE=3 SV=1 7 306 2.0E-39
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GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 37 0.45

Transmembrane Domains

Domain # Start End Length
1 304 323 19

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophun1|1238
MAAASIQDRTAEFKSVLAQAQRRQPSNKVGSQRRSLLTDSQKAAAGTTTTDGDVKAPRRSDFARKAAEIGRGISA
TMGKLEKLALLAKRRTLFDDRPVEINELTFVIKQDLSSLNQQIGALQTLSRQQHSKADQEGEHNKNVVYLLQGKL
TDVSVNFKDVLEARTKNIQASRSRTENFISSVSQHAQPALQPSASPLYGTPNRASPAPGSDTLSLNPVGDQQLLM
MEEAQPANTYIQQRGEAIEAIEKTIGELGSIFGQLATMVSEQSDMIQRIDANTEDVVDNVEGAQRELLKYWSRVS
SNRWLIAKMFGVLMIFFLVWVLVSG*
Coding >Ophun1|1238
ATGGCCGCCGCATCGATCCAAGACCGAACGGCCGAGTTCAAGTCGGTGCTGGCGCAGGCCCAGCGTCGACAGCCA
TCCAACAAGGTCGGATCGCAGCGGAGATCGCTGCTGACGGATTCGCAAAAGGCAGCGGCGGGAACGACGACGACA
GACGGAGATGTAAAGGCGCCGCGGCGGTCCGACTTTGCCCGGAAGGCGGCCGAGATCGGACGGGGCATCTCGGCT
ACTATGGGGAAGCTGGAGAAGCTGGCGCTGCTCGCCAAGCGTCGCACGCTGTTCGATGACCGACCCGTGGAAATC
AACGAGCTCACCTTCGTCATCAAGCAAGACCTTTCGTCGCTCAACCAGCAGATCGGCGCGCTGCAAACGCTCTCG
AGACAGCAGCACTCCAAGGCAGATCAGGAGGGCGAGCACAACAAAAACGTCGTCTACCTGCTACAGGGCAAGCTG
ACGGACGTGTCGGTCAACTTCAAGGACGTGCTCGAGGCGCGCACCAAGAACATCCAGGCCTCGCGCTCACGGACC
GAGAACTTCATATCATCCGTGTCGCAGCACGCGCAACCGGCACTACAGCCCTCGGCCTCGCCCCTCTACGGAACT
CCCAACCGGGCCTCTCCGGCGCCCGGGTCCGACACGCTCTCGCTCAACCCCGTCGGCGACCAGCAGCTGCTGATG
ATGGAGGAGGCGCAGCCGGCCAACACGTACATACAGCAACGGGGCGAGGCCATCGAGGCCATCGAAAAGACGATT
GGGGAACTGGGCAGCATCTTTGGTCAGCTGGCTACCATGGTGTCGGAGCAGAGCGACATGATCCAACGCATCGAC
GCCAACACCGAGGACGTGGTGGACAACGTCGAGGGCGCTCAGCGCGAGCTGCTCAAGTACTGGTCTCGCGTGTCG
AGCAATCGATGGCTGATTGCCAAGATGTTTGGCGTCTTGATGATATTCTTCCTCGTCTGGGTCCTCGTTTCGGGG
TAG
Transcript >Ophun1|1238
ATGGCCGCCGCATCGATCCAAGACCGAACGGCCGAGTTCAAGTCGGTGCTGGCGCAGGCCCAGCGTCGACAGCCA
TCCAACAAGGTCGGATCGCAGCGGAGATCGCTGCTGACGGATTCGCAAAAGGCAGCGGCGGGAACGACGACGACA
GACGGAGATGTAAAGGCGCCGCGGCGGTCCGACTTTGCCCGGAAGGCGGCCGAGATCGGACGGGGCATCTCGGCT
ACTATGGGGAAGCTGGAGAAGCTGGCGCTGCTCGCCAAGCGTCGCACGCTGTTCGATGACCGACCCGTGGAAATC
AACGAGCTCACCTTCGTCATCAAGCAAGACCTTTCGTCGCTCAACCAGCAGATCGGCGCGCTGCAAACGCTCTCG
AGACAGCAGCACTCCAAGGCAGATCAGGAGGGCGAGCACAACAAAAACGTCGTCTACCTGCTACAGGGCAAGCTG
ACGGACGTGTCGGTCAACTTCAAGGACGTGCTCGAGGCGCGCACCAAGAACATCCAGGCCTCGCGCTCACGGACC
GAGAACTTCATATCATCCGTGTCGCAGCACGCGCAACCGGCACTACAGCCCTCGGCCTCGCCCCTCTACGGAACT
CCCAACCGGGCCTCTCCGGCGCCCGGGTCCGACACGCTCTCGCTCAACCCCGTCGGCGACCAGCAGCTGCTGATG
ATGGAGGAGGCGCAGCCGGCCAACACGTACATACAGCAACGGGGCGAGGCCATCGAGGCCATCGAAAAGACGATT
GGGGAACTGGGCAGCATCTTTGGTCAGCTGGCTACCATGGTGTCGGAGCAGAGCGACATGATCCAACGCATCGAC
GCCAACACCGAGGACGTGGTGGACAACGTCGAGGGCGCTCAGCGCGAGCTGCTCAAGTACTGGTCTCGCGTGTCG
AGCAATCGATGGCTGATTGCCAAGATGTTTGGCGTCTTGATGATATTCTTCCTCGTCTGGGTCCTCGTTTCGGGG
TAG
Gene >Ophun1|1238
ATGGCCGCCGCATCGATCCAAGACCGAACGGCCGAGTTCAAGTCGGTGCTGGCGCAGGCCCAGCGTCGACAGCCA
TCCAACAAGGTCGGATCGCAGCGGAGATCGCTGCTGACGGATTCGCAAAAGGCAGCGGCGGGAACGACGACGACA
GACGGAGATGTAAAGGCGCCGCGGCGGTCCGACTTTGCCCGGAAGGCGGCCGAGATCGGACGGGGCATCTCGGCT
ACTATGGGGAAGCTGGAGAAGCTGGCGCTGCGTGAGTTGGCGAGGGCGCGCGAGAGAGGGAGATGGCATATACGG
ATACTGACTGTATAGAGCAGTCGCCAAGCGTCGCACGCTGTTCGATGACCGACCCGTGGAAATCAACGAGCTCAC
CTTCGTCATCAAGCAAGACCTTTCGTCGCTCAACCAGCAGATCGGCGCGCTGCAAACGCTCTCGAGACAGCAGCA
CTCCAAGGCAGATCAGGAGGGCGAGCACAACAAAAACGTCGTCTACCTGCTACAGGGCAAGCTGACGGACGTGTC
GGTCAACTTCAAGGACGTGCTCGAGGCGCGCACCAAGAACATCCAGGCCTCGCGCTCACGGACCGAGAACTTCAT
ATCATCCGTGTCGCAGCACGCGCAACCGGCACTACAGCCCTCGGCCTCGCCCCTCTACGGAACTCCCAACCGGGC
CTCTCCGGCGCCCGGGTCCGACACGCTCTCGCTCAACCCCGTCGGCGACCAGCAGCTGCTGATGATGGAGGAGGC
GCAGCCGGCCAACACGTACATACAGCAACGGGGCGAGGCCATCGAGGCCATCGAAAAGACGATTGGGGAACTGGG
CAGCATCTTTGGTCAGCTGGCTACCATGGTGTCGGAGCAGAGCGACATGATCCAACGCATCGACGCCAACACCGA
GGACGTGGTGGACAACGTCGAGGGCGCTCAGCGCGAGCTGCTCAAGTACTGGTCTCGCGTGTCGAGCAATCGATG
GCTGATTGCCAAGATGTTTGGCGTCTTGATGATATTCTTCCTGTGAGTGGAATGACTCCCACCATGTCATCAGAA
CCATCTAACCAGCCATGGCAGCGTCTGGGTCCTCGTTTCGGGGTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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