Fungal Genomics

at Utrecht University

General Properties

Protein IDOphun1|1163
Gene name
LocationContig_144:29685..30612
Strand-
Gene length (bp)927
Transcript length (bp)810
Coding sequence length (bp)810
Protein length (aa) 270

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF02630 SCO1-SenC SCO1/SenC 5.1E-46 108 243

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|P23833|SCO1_YEAST Protein SCO1, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SCO1 PE=1 SV=1 6 267 1.0E-76
sp|O42899|SCO1_SCHPO Protein sco1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sco1 PE=3 SV=1 11 260 3.0E-70
sp|P38072|SCO2_YEAST Protein SCO2, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SCO2 PE=1 SV=1 65 267 4.0E-69
sp|Q8VYP0|SCO11_ARATH Protein SCO1 homolog 1, mitochondrial OS=Arabidopsis thaliana GN=HCC1 PE=2 SV=1 48 268 2.0E-52
sp|Q92H76|SCO22_RICCN SCO2-like protein RC0895 OS=Rickettsia conorii (strain ATCC VR-613 / Malish 7) GN=RC0895 PE=3 SV=1 105 260 3.0E-43
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Swissprot ID Swissprot Description Start End E-value
sp|P23833|SCO1_YEAST Protein SCO1, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SCO1 PE=1 SV=1 6 267 1.0E-76
sp|O42899|SCO1_SCHPO Protein sco1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sco1 PE=3 SV=1 11 260 3.0E-70
sp|P38072|SCO2_YEAST Protein SCO2, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SCO2 PE=1 SV=1 65 267 4.0E-69
sp|Q8VYP0|SCO11_ARATH Protein SCO1 homolog 1, mitochondrial OS=Arabidopsis thaliana GN=HCC1 PE=2 SV=1 48 268 2.0E-52
sp|Q92H76|SCO22_RICCN SCO2-like protein RC0895 OS=Rickettsia conorii (strain ATCC VR-613 / Malish 7) GN=RC0895 PE=3 SV=1 105 260 3.0E-43
sp|Q1RIN4|SCO22_RICBR SCO2-like protein RBE_0699 OS=Rickettsia bellii (strain RML369-C) GN=RBE_0699 PE=3 SV=1 105 260 1.0E-42
sp|Q5SUC9|SCO1_MOUSE Protein SCO1 homolog, mitochondrial OS=Mus musculus GN=Sco1 PE=1 SV=1 57 265 2.0E-42
sp|O75880|SCO1_HUMAN Protein SCO1 homolog, mitochondrial OS=Homo sapiens GN=SCO1 PE=1 SV=1 61 268 4.0E-42
sp|Q8VCL2|SCO2_MOUSE Protein SCO2 homolog, mitochondrial OS=Mus musculus GN=Sco2 PE=1 SV=1 29 264 7.0E-42
sp|Q4UKW2|SCO22_RICFE SCO2-like protein RF_0960 OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) GN=RF_0960 PE=3 SV=1 105 260 2.0E-41
sp|A1A4J8|SCO1_BOVIN Protein SCO1 homolog, mitochondrial OS=Bos taurus GN=SCO1 PE=2 SV=1 61 265 2.0E-41
sp|Q9ZCW7|SCO22_RICPR SCO2-like protein RP587 OS=Rickettsia prowazekii (strain Madrid E) GN=RP587 PE=3 SV=1 103 259 7.0E-41
sp|O43819|SCO2_HUMAN Protein SCO2 homolog, mitochondrial OS=Homo sapiens GN=SCO2 PE=1 SV=3 82 264 2.0E-39
sp|Q5RH02|SCO2_DANRE Protein SCO2 homolog, mitochondrial OS=Danio rerio GN=sco2 PE=3 SV=1 80 265 3.0E-39
sp|A6H784|SCO2_BOVIN Protein SCO2 homolog, mitochondrial OS=Bos taurus GN=SCO2 PE=2 SV=1 52 268 7.0E-39
sp|Q8LAL0|SCO12_ARATH Protein SCO1 homolog 2, mitochondrial OS=Arabidopsis thaliana GN=HCC2 PE=2 SV=1 97 264 1.0E-34
sp|Q68WF1|SCO22_RICTY SCO2-like protein RT0576 OS=Rickettsia typhi (strain ATCC VR-144 / Wilmington) GN=RT0576 PE=3 SV=2 105 245 4.0E-31
sp|Q52720|SENC_RHOCB Protein SenC OS=Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003) GN=senC PE=3 SV=2 90 253 2.0E-25
sp|P47206|SCOP_PSEST Putative copper-binding protein OS=Pseudomonas stutzeri GN=scoP PE=3 SV=2 89 243 2.0E-23
sp|Q1RKK4|SCO21_RICBR SCO2-like protein RBE_0029 OS=Rickettsia bellii (strain RML369-C) GN=RBE_0029 PE=3 SV=1 110 245 1.0E-16
sp|Q92JM5|SCO21_RICCN SCO2-like protein RC0042 OS=Rickettsia conorii (strain ATCC VR-613 / Malish 7) GN=RC0042 PE=3 SV=1 104 245 6.0E-16
sp|Q4UNH4|SCO21_RICFE SCO2-like protein RF_0043 OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) GN=RF_0043 PE=3 SV=1 70 245 7.0E-16
sp|Q9ZEB4|SCO21_RICPR SCO2-like protein RP031 OS=Rickettsia prowazekii (strain Madrid E) GN=RP031 PE=3 SV=1 110 241 2.0E-13
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GO

(None)

SignalP

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SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 21 0.45

Transmembrane Domains

Domain # Start End Length
1 63 82 19

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophun1|1163
MTRPAAAKVAGRLFCRRCFSSSFFQLPRPRSSPPRAPVRASAPRRTKHKTVEQARSRQSNGPFSWKSGVLFVITC
AALVWYFESEKARMQRKRIADASKGVGKPKVGGGFELIDQDGKLFTSAMMKGKHSLVYFGFTRCPDICPDELDKM
ARMIDLVEDKAPGSLLPIFITCDPARDDSKALKSYLAEFHPAIIGLTGTYDQIKDVCKKYRVYFSTPQEVKAGQD
YLVDHSIYFYLMDPQGDFVEALGRQHSPGEASKLILDHIKDWKG*
Coding >Ophun1|1163
ATGACGCGGCCGGCCGCAGCCAAAGTCGCCGGTCGGCTCTTCTGCCGGCGATGCTTCTCCTCTAGCTTCTTTCAG
CTGCCGCGGCCACGATCGTCGCCGCCCCGAGCCCCTGTCAGGGCATCGGCACCGAGACGCACCAAGCACAAGACT
GTCGAACAGGCTCGGAGCCGACAGTCCAATGGGCCCTTCTCGTGGAAGTCCGGCGTCCTTTTCGTCATCACTTGC
GCGGCGCTGGTCTGGTATTTCGAGTCTGAAAAGGCGCGGATGCAGAGGAAGCGCATCGCCGACGCAAGCAAGGGC
GTTGGCAAGCCCAAAGTCGGCGGCGGTTTCGAACTCATCGATCAAGATGGGAAGCTCTTCACCAGCGCCATGATG
AAGGGCAAACACTCGCTGGTCTACTTCGGCTTTACGCGCTGCCCCGACATCTGCCCAGACGAGCTGGACAAGATG
GCGCGCATGATAGATCTCGTTGAGGACAAAGCGCCCGGCTCTCTCTTACCAATATTCATCACCTGTGACCCTGCA
CGAGACGATTCCAAGGCCCTCAAGAGCTATCTCGCCGAGTTTCACCCTGCCATTATCGGACTAACAGGAACATAC
GACCAAATCAAGGACGTTTGCAAGAAATATCGGGTTTATTTCAGCACGCCTCAAGAGGTCAAGGCTGGGCAGGAC
TACCTGGTCGACCACAGCATCTACTTCTACCTTATGGATCCGCAGGGTGACTTTGTCGAGGCATTGGGGCGGCAG
CACTCACCGGGCGAGGCTTCGAAGCTCATACTCGATCATATCAAGGACTGGAAGGGTTGA
Transcript >Ophun1|1163
ATGACGCGGCCGGCCGCAGCCAAAGTCGCCGGTCGGCTCTTCTGCCGGCGATGCTTCTCCTCTAGCTTCTTTCAG
CTGCCGCGGCCACGATCGTCGCCGCCCCGAGCCCCTGTCAGGGCATCGGCACCGAGACGCACCAAGCACAAGACT
GTCGAACAGGCTCGGAGCCGACAGTCCAATGGGCCCTTCTCGTGGAAGTCCGGCGTCCTTTTCGTCATCACTTGC
GCGGCGCTGGTCTGGTATTTCGAGTCTGAAAAGGCGCGGATGCAGAGGAAGCGCATCGCCGACGCAAGCAAGGGC
GTTGGCAAGCCCAAAGTCGGCGGCGGTTTCGAACTCATCGATCAAGATGGGAAGCTCTTCACCAGCGCCATGATG
AAGGGCAAACACTCGCTGGTCTACTTCGGCTTTACGCGCTGCCCCGACATCTGCCCAGACGAGCTGGACAAGATG
GCGCGCATGATAGATCTCGTTGAGGACAAAGCGCCCGGCTCTCTCTTACCAATATTCATCACCTGTGACCCTGCA
CGAGACGATTCCAAGGCCCTCAAGAGCTATCTCGCCGAGTTTCACCCTGCCATTATCGGACTAACAGGAACATAC
GACCAAATCAAGGACGTTTGCAAGAAATATCGGGTTTATTTCAGCACGCCTCAAGAGGTCAAGGCTGGGCAGGAC
TACCTGGTCGACCACAGCATCTACTTCTACCTTATGGATCCGCAGGGTGACTTTGTCGAGGCATTGGGGCGGCAG
CACTCACCGGGCGAGGCTTCGAAGCTCATACTCGATCATATCAAGGACTGGAAGGGTTGA
Gene >Ophun1|1163
ATGACGCGGCCGGCCGCAGCCAAAGTCGCCGGTCGGCTCTTCTGCCGGCGATGCTTCTCCTCTAGCTTCTTTCAG
CTGCCGCGGCCACGATCGTCGCCGCCCCGAGCCCCTGTCAGGGCATCGGCACCGAGACGCACCAAGCACAAGACT
GTCGAACAGGCTCGGAGCCGACAGTCCAATGGGGTAACGATGCATGGCGCGTGAAGCATGATGAGGGACGAGAAC
TGACAGACCGACTGGCAGCCCTTCTCGTGGAAGTCCGGCGTCCTTTTCGTCATCACTTGCGCGGCGCTGGTCTGG
TATTTCGAGTCTGAAAAGGCGCGGATGCAGAGGAAGCGCATCGCCGACGCAAGCAAGGGCGTTGGCAAGCCCAAA
GTCGGCGGCGGTTTCGAACTCATCGATCAAGATGGGAAGCTCTTCACCAGCGCCATGATGAAGGGCAAACACTCG
CTGGTACTGTCGTGTCTGCTTGCCCGGCGGCCTGGCTGCTGCTGACGCCGCCATGCATAGGTCTACTTCGGCTTT
ACGCGCTGCCCCGACATCTGCCCAGACGAGCTGGACAAGATGGCGCGCATGATAGATCTCGTTGAGGACAAAGCG
CCCGGCTCTCTCTTACCAATATTCATCACCTGTGACCCTGCACGAGACGATTCCAAGGCCCTCAAGAGCTATCTC
GCCGAGTTTCACCCTGCCATTATCGGACTAACAGGAACATACGACCAAATCAAGGACGTTTGCAAGAAATATCGG
GTTTATTTCAGCACGCCTCAAGAGGTCAAGGCTGGGCAGGACTACCTGGTCGACCACAGCATCTACTTCTACCTT
ATGGATCCGCAGGGTGACTTTGTCGAGGCATTGGGGCGGCAGCACTCACCGGGCGAGGCTTCGAAGCTCATACTC
GATCATATCAAGGACTGGAAGGGTTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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