Fungal Genomics

at Utrecht University

General Properties

Protein IDOphun1|1059
Gene name
LocationContig_14:38740..39853
Strand-
Gene length (bp)1113
Transcript length (bp)1113
Coding sequence length (bp)1113
Protein length (aa) 371

Your browser does not support drawing a protein figure.

PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF03834 Rad10 Binding domain of DNA repair protein Ercc1 (rad10/Swi10) 1.1E-38 71 200

Swissprot hits

[Show all]
Swissprot ID Swissprot Description Start End E-value
sp|Q06182|SWI10_SCHPO Mating-type switching protein swi10 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=swi10 PE=3 SV=1 56 288 1.0E-70
sp|P07903|ERCC1_MOUSE DNA excision repair protein ERCC-1 OS=Mus musculus GN=Ercc1 PE=2 SV=2 60 280 5.0E-54
sp|Q1LZ75|ERCC1_BOVIN DNA excision repair protein ERCC-1 OS=Bos taurus GN=ERCC1 PE=2 SV=1 47 280 5.0E-54
sp|P07992|ERCC1_HUMAN DNA excision repair protein ERCC-1 OS=Homo sapiens GN=ERCC1 PE=1 SV=1 60 280 8.0E-54
sp|Q9MA98|ERCC1_ARATH DNA excision repair protein ERCC-1 OS=Arabidopsis thaliana GN=ERCC1 PE=2 SV=1 66 294 5.0E-51
[Show all]
[Show less]
Swissprot ID Swissprot Description Start End E-value
sp|Q06182|SWI10_SCHPO Mating-type switching protein swi10 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=swi10 PE=3 SV=1 56 288 1.0E-70
sp|P07903|ERCC1_MOUSE DNA excision repair protein ERCC-1 OS=Mus musculus GN=Ercc1 PE=2 SV=2 60 280 5.0E-54
sp|Q1LZ75|ERCC1_BOVIN DNA excision repair protein ERCC-1 OS=Bos taurus GN=ERCC1 PE=2 SV=1 47 280 5.0E-54
sp|P07992|ERCC1_HUMAN DNA excision repair protein ERCC-1 OS=Homo sapiens GN=ERCC1 PE=1 SV=1 60 280 8.0E-54
sp|Q9MA98|ERCC1_ARATH DNA excision repair protein ERCC-1 OS=Arabidopsis thaliana GN=ERCC1 PE=2 SV=1 66 294 5.0E-51
sp|Q55GG6|ERCC1_DICDI DNA excision repair protein ERCC-1 OS=Dictyostelium discoideum GN=ercc1 PE=3 SV=1 66 280 4.0E-23
sp|P06838|RAD10_YEAST DNA repair protein RAD10 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RAD10 PE=1 SV=1 33 197 2.0E-09
[Show less]

GO

GO Term Description Terminal node
GO:0005634 nucleus Yes
GO:0006281 DNA repair Yes
GO:0003684 damaged DNA binding Yes
GO:0044260 cellular macromolecule metabolic process No
GO:0043229 intracellular organelle No
GO:0051716 cellular response to stimulus No
GO:0043170 macromolecule metabolic process No
GO:0006139 nucleobase-containing compound metabolic process No
GO:0006725 cellular aromatic compound metabolic process No
GO:0050896 response to stimulus No
GO:0006259 DNA metabolic process No
GO:0090304 nucleic acid metabolic process No
GO:0097159 organic cyclic compound binding No
GO:0008152 metabolic process No
GO:0009987 cellular process No
GO:0043227 membrane-bounded organelle No
GO:1901363 heterocyclic compound binding No
GO:0044238 primary metabolic process No
GO:0044237 cellular metabolic process No
GO:0006974 cellular response to DNA damage stimulus No
GO:0006950 response to stress No
GO:0043231 intracellular membrane-bounded organelle No
GO:0071704 organic substance metabolic process No
GO:1901360 organic cyclic compound metabolic process No
GO:0003676 nucleic acid binding No
GO:0005488 binding No
GO:0008150 biological_process No
GO:0046483 heterocycle metabolic process No
GO:0006807 nitrogen compound metabolic process No
GO:0034641 cellular nitrogen compound metabolic process No
GO:0003674 molecular_function No
GO:0005575 cellular_component No
GO:0033554 cellular response to stress No
GO:0110165 cellular anatomical entity No
GO:0003677 DNA binding No
GO:0043226 organelle No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 26 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophun1|1059
MGIDDDDDYGADESLLVAMAAAADATRPPAKQQIQQPKPQMMQRPDRPPATKKVVQPTPQVLPQRQSASAILVSP
RQRGNPILASIRAMPWEYSDLPADYVLGQSTCALFLRRVPISTRLSRLLTGLSSLKYHRLHPEYIYTRIRNLQGK
YTLRVLLTMVDIPNHEDSLRELSKTSVVNNVTIILCWSAAEAARYLELYKSYENASFAAIRGRQASSYADRLVDF
VTVPRSLNKSDAVAMVANFGSLKNAVNADPEQLALLGGWGGVKVKRWTAAVDEPFRVNKSSKRGSGSAPRASGSK
SAGESSGTPLAAVVKEPVPLSREDMSPPADEADGSRNDNNKNTASSGSAGAEEPVSGGIAAALARLREIG*
Coding >Ophun1|1059
ATGGGCATCGACGACGATGACGACTACGGAGCTGACGAATCGCTTCTCGTGGCCATGGCTGCGGCGGCCGATGCC
ACGCGACCCCCGGCGAAACAGCAGATACAGCAGCCCAAGCCGCAGATGATGCAGCGCCCCGACCGCCCTCCGGCC
ACCAAGAAGGTGGTGCAGCCGACGCCCCAGGTGCTGCCTCAGCGGCAGAGCGCCTCGGCCATCCTCGTATCGCCT
CGACAGCGCGGGAACCCCATCTTGGCCAGCATTAGGGCCATGCCGTGGGAGTACAGCGACCTGCCTGCCGACTAT
GTCCTCGGCCAGTCGACGTGTGCCCTCTTTCTGAGGCGAGTTCCCATCTCGACACGACTGTCACGGTTGCTGACG
GGTCTGAGCAGCCTCAAGTACCACCGACTGCACCCCGAATACATCTATACGCGGATCCGGAACTTGCAGGGGAAA
TACACTCTGCGCGTGCTGCTCACCATGGTAGACATCCCCAACCACGAAGACTCGCTGCGGGAGCTTTCCAAGACG
TCCGTCGTCAACAACGTCACCATCATCCTATGCTGGTCAGCGGCCGAGGCGGCGCGTTATCTGGAGCTGTATAAG
TCGTATGAGAACGCCAGCTTTGCCGCCATCCGTGGCCGGCAGGCATCCAGCTACGCCGATCGATTGGTCGACTTC
GTCACGGTACCCAGGAGTCTCAACAAGTCGGACGCTGTTGCCATGGTGGCCAACTTTGGCAGCCTCAAGAACGCC
GTCAACGCCGACCCGGAGCAACTTGCTCTACTTGGCGGCTGGGGCGGCGTTAAGGTCAAGAGATGGACCGCTGCC
GTGGACGAGCCATTCCGCGTTAACAAGTCTTCCAAACGCGGCTCCGGCTCCGCACCCCGTGCCTCGGGAAGCAAG
TCGGCGGGCGAAAGTTCGGGAACACCTTTGGCAGCAGTTGTCAAAGAGCCCGTCCCGCTGTCTCGGGAAGACATG
TCTCCGCCGGCTGATGAGGCAGACGGGTCCCGTAATGACAACAACAAGAACACGGCTAGCTCTGGTTCAGCAGGT
GCCGAGGAGCCCGTCAGCGGGGGCATTGCAGCAGCTCTGGCCAGGCTTCGCGAGATTGGTTGA
Transcript >Ophun1|1059
ATGGGCATCGACGACGATGACGACTACGGAGCTGACGAATCGCTTCTCGTGGCCATGGCTGCGGCGGCCGATGCC
ACGCGACCCCCGGCGAAACAGCAGATACAGCAGCCCAAGCCGCAGATGATGCAGCGCCCCGACCGCCCTCCGGCC
ACCAAGAAGGTGGTGCAGCCGACGCCCCAGGTGCTGCCTCAGCGGCAGAGCGCCTCGGCCATCCTCGTATCGCCT
CGACAGCGCGGGAACCCCATCTTGGCCAGCATTAGGGCCATGCCGTGGGAGTACAGCGACCTGCCTGCCGACTAT
GTCCTCGGCCAGTCGACGTGTGCCCTCTTTCTGAGGCGAGTTCCCATCTCGACACGACTGTCACGGTTGCTGACG
GGTCTGAGCAGCCTCAAGTACCACCGACTGCACCCCGAATACATCTATACGCGGATCCGGAACTTGCAGGGGAAA
TACACTCTGCGCGTGCTGCTCACCATGGTAGACATCCCCAACCACGAAGACTCGCTGCGGGAGCTTTCCAAGACG
TCCGTCGTCAACAACGTCACCATCATCCTATGCTGGTCAGCGGCCGAGGCGGCGCGTTATCTGGAGCTGTATAAG
TCGTATGAGAACGCCAGCTTTGCCGCCATCCGTGGCCGGCAGGCATCCAGCTACGCCGATCGATTGGTCGACTTC
GTCACGGTACCCAGGAGTCTCAACAAGTCGGACGCTGTTGCCATGGTGGCCAACTTTGGCAGCCTCAAGAACGCC
GTCAACGCCGACCCGGAGCAACTTGCTCTACTTGGCGGCTGGGGCGGCGTTAAGGTCAAGAGATGGACCGCTGCC
GTGGACGAGCCATTCCGCGTTAACAAGTCTTCCAAACGCGGCTCCGGCTCCGCACCCCGTGCCTCGGGAAGCAAG
TCGGCGGGCGAAAGTTCGGGAACACCTTTGGCAGCAGTTGTCAAAGAGCCCGTCCCGCTGTCTCGGGAAGACATG
TCTCCGCCGGCTGATGAGGCAGACGGGTCCCGTAATGACAACAACAAGAACACGGCTAGCTCTGGTTCAGCAGGT
GCCGAGGAGCCCGTCAGCGGGGGCATTGCAGCAGCTCTGGCCAGGCTTCGCGAGATTGGTTGA
Gene >Ophun1|1059
ATGGGCATCGACGACGATGACGACTACGGAGCTGACGAATCGCTTCTCGTGGCCATGGCTGCGGCGGCCGATGCC
ACGCGACCCCCGGCGAAACAGCAGATACAGCAGCCCAAGCCGCAGATGATGCAGCGCCCCGACCGCCCTCCGGCC
ACCAAGAAGGTGGTGCAGCCGACGCCCCAGGTGCTGCCTCAGCGGCAGAGCGCCTCGGCCATCCTCGTATCGCCT
CGACAGCGCGGGAACCCCATCTTGGCCAGCATTAGGGCCATGCCGTGGGAGTACAGCGACCTGCCTGCCGACTAT
GTCCTCGGCCAGTCGACGTGTGCCCTCTTTCTGAGGCGAGTTCCCATCTCGACACGACTGTCACGGTTGCTGACG
GGTCTGAGCAGCCTCAAGTACCACCGACTGCACCCCGAATACATCTATACGCGGATCCGGAACTTGCAGGGGAAA
TACACTCTGCGCGTGCTGCTCACCATGGTAGACATCCCCAACCACGAAGACTCGCTGCGGGAGCTTTCCAAGACG
TCCGTCGTCAACAACGTCACCATCATCCTATGCTGGTCAGCGGCCGAGGCGGCGCGTTATCTGGAGCTGTATAAG
TCGTATGAGAACGCCAGCTTTGCCGCCATCCGTGGCCGGCAGGCATCCAGCTACGCCGATCGATTGGTCGACTTC
GTCACGGTACCCAGGAGTCTCAACAAGTCGGACGCTGTTGCCATGGTGGCCAACTTTGGCAGCCTCAAGAACGCC
GTCAACGCCGACCCGGAGCAACTTGCTCTACTTGGCGGCTGGGGCGGCGTTAAGGTCAAGAGATGGACCGCTGCC
GTGGACGAGCCATTCCGCGTTAACAAGTCTTCCAAACGCGGCTCCGGCTCCGCACCCCGTGCCTCGGGAAGCAAG
TCGGCGGGCGAAAGTTCGGGAACACCTTTGGCAGCAGTTGTCAAAGAGCCCGTCCCGCTGTCTCGGGAAGACATG
TCTCCGCCGGCTGATGAGGCAGACGGGTCCCGTAATGACAACAACAAGAACACGGCTAGCTCTGGTTCAGCAGGT
GCCGAGGAGCCCGTCAGCGGGGGCATTGCAGCAGCTCTGGCCAGGCTTCGCGAGATTGGTTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail