Fungal Genomics

at Utrecht University

PFAM Domain


General information

PFAM domainPF00271
Short nameHelicase_C
Long nameHelicase conserved C-terminal domain
Proteins with at least one of this domain69
Total domain count69
More informationPFAM website

Proteins with this PFAM domain

Note: all PFAM domains are shown for these proteins
Short name Long name E-value Start End Name
protein ID PFAM
Ophun1|1142 PF00270 DEAD DEAD/DEAH box helicase 6.0E-30 36 254
PF00271 Helicase_C Helicase conserved C-terminal domain 1.8E-19 305 414
PF13959 DUF4217 Domain of unknown function (DUF4217) 1.5E-16 463 521
Ophun1|1146 PF00270 DEAD DEAD/DEAH box helicase 2.0E-07 186 332
PF00271 Helicase_C Helicase conserved C-terminal domain 2.9E-10 369 509
PF04408 HA2 Helicase associated domain (HA2) 5.2E-17 572 660
PF07717 OB_NTP_bind Oligonucleotide/oligosaccharide-binding (OB)-fold 3.4E-23 727 802
Ophun1|119 PF00270 DEAD DEAD/DEAH box helicase 6.5E-49 548 718
PF00271 Helicase_C Helicase conserved C-terminal domain 6.1E-27 760 869
Ophun1|1224 PF00176 SNF2-rel_dom SNF2-related domain 6.0E-70 348 714
PF00271 Helicase_C Helicase conserved C-terminal domain 3.8E-12 883 981
Ophun1|1271 PF13892 DBINO DNA-binding domain 2.1E-48 589 720
PF04851 ResIII Type III restriction enzyme, res subunit 7.1E-07 829 997
PF00176 SNF2-rel_dom SNF2-related domain 4.5E-65 847 1132
PF00271 Helicase_C Helicase conserved C-terminal domain 5.8E-19 1397 1509
Ophun1|1316 PF00270 DEAD DEAD/DEAH box helicase 3.9E-46 100 271
PF04851 ResIII Type III restriction enzyme, res subunit 2.9E-06 115 263
PF00271 Helicase_C Helicase conserved C-terminal domain 4.5E-24 317 418
PF13959 DUF4217 Domain of unknown function (DUF4217) 6.5E-12 460 506
Ophun1|1543 PF07529 HSA HSA domain 1.9E-05 343 406
PF04851 ResIII Type III restriction enzyme, res subunit 1.8E-08 810 970
PF00176 SNF2-rel_dom SNF2-related domain 7.1E-70 829 1109
PF00271 Helicase_C Helicase conserved C-terminal domain 5.1E-18 1373 1485
Ophun1|1851 PF00270 DEAD DEAD/DEAH box helicase 2.7E-48 110 274
PF04851 ResIII Type III restriction enzyme, res subunit 2.6E-06 130 271
PF00271 Helicase_C Helicase conserved C-terminal domain 7.3E-24 359 454
PF08147 DBP10CT DBP10CT (NUC160) domain 4.0E-21 734 799
Ophun1|1977 PF00270 DEAD DEAD/DEAH box helicase 1.4E-41 102 288
PF00271 Helicase_C Helicase conserved C-terminal domain 2.0E-20 350 452
Ophun1|2157 PF00271 Helicase_C Helicase conserved C-terminal domain 6.4E-14 57 155
Ophun1|2202 PF00176 SNF2-rel_dom SNF2-related domain 3.3E-65 193 437
PF00271 Helicase_C Helicase conserved C-terminal domain 1.8E-13 788 898
Ophun1|2210 PF00270 DEAD DEAD/DEAH box helicase 8.0E-48 145 314
PF04851 ResIII Type III restriction enzyme, res subunit 7.5E-05 165 308
PF00271 Helicase_C Helicase conserved C-terminal domain 2.8E-25 358 509
Ophun1|2261 PF04851 ResIII Type III restriction enzyme, res subunit 1.0E-05 297 468
PF00176 SNF2-rel_dom SNF2-related domain 6.0E-41 311 613
PF00271 Helicase_C Helicase conserved C-terminal domain 3.0E-11 825 928
Ophun1|2272 PF00271 Helicase_C Helicase conserved C-terminal domain 4.5E-12 346 469
PF04408 HA2 Helicase associated domain (HA2) 1.7E-16 531 620
PF07717 OB_NTP_bind Oligonucleotide/oligosaccharide-binding (OB)-fold 9.7E-10 695 765
Ophun1|2373 PF00176 SNF2-rel_dom SNF2-related domain 7.3E-72 332 710
PF04851 ResIII Type III restriction enzyme, res subunit 1.0E-06 399 578
PF00271 Helicase_C Helicase conserved C-terminal domain 1.1E-15 743 844
Ophun1|2377 PF00270 DEAD DEAD/DEAH box helicase 7.0E-11 629 784
PF13401 AAA_22 AAA domain 8.5E-08 635 780
PF00271 Helicase_C Helicase conserved C-terminal domain 5.2E-13 891 1012
PF04408 HA2 Helicase associated domain (HA2) 1.6E-14 1077 1153
Ophun1|3008 PF00270 DEAD DEAD/DEAH box helicase 9.4E-46 182 351
PF04851 ResIII Type III restriction enzyme, res subunit 1.5E-07 194 344
PF00271 Helicase_C Helicase conserved C-terminal domain 4.5E-24 388 498
PF13959 DUF4217 Domain of unknown function (DUF4217) 5.2E-24 540 600
Ophun1|3013 PF00271 Helicase_C Helicase conserved C-terminal domain 9.9E-10 27 83
Ophun1|308 PF00575 S1 S1 RNA binding domain 4.3E-12 175 247
PF00271 Helicase_C Helicase conserved C-terminal domain 7.5E-14 680 809
Ophun1|3258 PF08658 Rad54_N Rad54 N terminal 2.9E-50 1 169
PF04851 ResIII Type III restriction enzyme, res subunit 1.9E-10 192 370
PF00176 SNF2-rel_dom SNF2-related domain 1.2E-64 195 502
PF00271 Helicase_C Helicase conserved C-terminal domain 8.8E-16 542 652
Ophun1|3377 PF00270 DEAD DEAD/DEAH box helicase 4.9E-43 72 236
PF00271 Helicase_C Helicase conserved C-terminal domain 5.8E-27 273 379
Ophun1|3641 PF00270 DEAD DEAD/DEAH box helicase 4.1E-41 176 373
PF00271 Helicase_C Helicase conserved C-terminal domain 2.1E-19 477 563
PF13959 DUF4217 Domain of unknown function (DUF4217) 3.8E-15 631 690
Ophun1|372 PF00270 DEAD DEAD/DEAH box helicase 1.3E-41 53 215
PF00271 Helicase_C Helicase conserved C-terminal domain 1.8E-32 254 362
Ophun1|3764 PF00270 DEAD DEAD/DEAH box helicase 4.2E-23 190 409
PF00271 Helicase_C Helicase conserved C-terminal domain 2.3E-24 481 580
Ophun1|3940 PF00270 DEAD DEAD/DEAH box helicase 9.6E-06 1 42
PF00271 Helicase_C Helicase conserved C-terminal domain 2.1E-31 80 187
Ophun1|3975 PF00270 DEAD DEAD/DEAH box helicase 3.2E-45 49 213
PF04851 ResIII Type III restriction enzyme, res subunit 4.0E-05 62 208
PF00271 Helicase_C Helicase conserved C-terminal domain 9.6E-31 250 358
Ophun1|3991 PF00270 DEAD DEAD/DEAH box helicase 2.4E-30 348 579
PF04851 ResIII Type III restriction enzyme, res subunit 6.9E-05 363 425
PF00271 Helicase_C Helicase conserved C-terminal domain 4.8E-18 677 779
Ophun1|4034 PF00176 SNF2-rel_dom SNF2-related domain 6.8E-72 290 569
PF13920 zf-C3HC4_3 Zinc finger, C3HC4 type (RING finger) 9.0E-08 609 652
PF13639 zf-RING_2 Ring finger domain 1.0E-06 610 650
PF00097 zf-C3HC4 Zinc finger, C3HC4 type (RING finger) 3.2E-07 612 649
PF13923 zf-C3HC4_2 Zinc finger, C3HC4 type (RING finger) 1.1E-07 612 649
PF00271 Helicase_C Helicase conserved C-terminal domain 4.4E-14 680 792
PF04055 Radical_SAM Radical SAM superfamily 2.1E-22 1494 1671
PF08608 Wyosine_form Wyosine base formation 2.7E-23 1679 1747
Ophun1|4111 PF00270 DEAD DEAD/DEAH box helicase 4.9E-17 160 306
PF00271 Helicase_C Helicase conserved C-terminal domain 6.6E-06 471 557
PF13234 rRNA_proc-arch rRNA-processing arch domain 2.9E-92 611 888
PF08148 DSHCT DSHCT (NUC185) domain 8.7E-48 916 1085
Ophun1|4186 PF00270 DEAD DEAD/DEAH box helicase 1.5E-51 201 372
PF00271 Helicase_C Helicase conserved C-terminal domain 4.2E-30 425 536
Ophun1|4259 PF04851 ResIII Type III restriction enzyme, res subunit 1.9E-07 838 1023
PF00176 SNF2-rel_dom SNF2-related domain 3.8E-43 856 1155
PF00271 Helicase_C Helicase conserved C-terminal domain 3.7E-21 1212 1315
Ophun1|4341 PF04851 ResIII Type III restriction enzyme, res subunit 2.4E-05 151 323
PF00176 SNF2-rel_dom SNF2-related domain 6.8E-51 169 433
PF00271 Helicase_C Helicase conserved C-terminal domain 1.3E-18 529 640
PF14773 VIGSSK Helicase-associated putative binding domain, C-terminal 4.9E-26 762 821
Ophun1|4462 PF13625 Helicase_C_3 Helicase conserved C-terminal domain 4.5E-34 102 226
PF04851 ResIII Type III restriction enzyme, res subunit 4.0E-15 341 498
PF16203 ERCC3_RAD25_C ERCC3/RAD25/XPB C-terminal helicase 7.0E-125 524 759
PF00271 Helicase_C Helicase conserved C-terminal domain 6.1E-12 568 674
Ophun1|4478 PF18149 Helicase_PWI N-terminal helicase PWI domain 9.2E-32 287 400
PF00270 DEAD DEAD/DEAH box helicase 1.1E-27 523 697
PF04851 ResIII Type III restriction enzyme, res subunit 3.0E-14 523 697
PF00271 Helicase_C Helicase conserved C-terminal domain 2.0E-07 758 901
PF02889 Sec63 Sec63 Brl domain 3.3E-92 1023 1330
PF00270 DEAD DEAD/DEAH box helicase 2.8E-18 1374 1539
PF04851 ResIII Type III restriction enzyme, res subunit 1.8E-05 1376 1507
PF02889 Sec63 Sec63 Brl domain 4.4E-66 1859 2178
Ophun1|4536 PF04851 ResIII Type III restriction enzyme, res subunit 8.8E-10 180 340
PF00176 SNF2-rel_dom SNF2-related domain 2.4E-82 190 464
PF00271 Helicase_C Helicase conserved C-terminal domain 1.0E-16 488 599
PF09110 HAND HAND 8.5E-34 752 856
PF09111 SLIDE SLIDE 5.8E-44 914 1029
Ophun1|4583 PF00270 DEAD DEAD/DEAH box helicase 3.8E-48 260 430
PF00271 Helicase_C Helicase conserved C-terminal domain 2.7E-27 472 576
Ophun1|4616 PF00176 SNF2-rel_dom SNF2-related domain 8.4E-51 399 731
PF04851 ResIII Type III restriction enzyme, res subunit 1.5E-08 400 564
PF00097 zf-C3HC4 Zinc finger, C3HC4 type (RING finger) 1.4E-05 745 784
PF00271 Helicase_C Helicase conserved C-terminal domain 3.7E-15 823 937
Ophun1|4653 PF04851 ResIII Type III restriction enzyme, res subunit 2.0E-14 56 224
PF00270 DEAD DEAD/DEAH box helicase 5.6E-19 59 225
PF00271 Helicase_C Helicase conserved C-terminal domain 1.8E-15 421 526
PF03368 Dicer_dimer Dicer dimerisation domain 3.2E-21 593 683
Ophun1|4755 PF00176 SNF2-rel_dom SNF2-related domain 6.5E-31 203 653
PF00271 Helicase_C Helicase conserved C-terminal domain 3.7E-06 882 992
Ophun1|4969 PF00271 Helicase_C Helicase conserved C-terminal domain 1.0E-09 340 447
PF18147 Suv3_C_1 Suv3 C-terminal domain 1 3.4E-08 539 580
PF12513 SUV3_C Mitochondrial degradasome RNA helicase subunit C terminal 2.6E-14 614 658
Ophun1|5073 PF04851 ResIII Type III restriction enzyme, res subunit 6.0E-22 142 298
PF00270 DEAD DEAD/DEAH box helicase 2.1E-17 143 303
PF00271 Helicase_C Helicase conserved C-terminal domain 1.9E-22 493 608
Ophun1|5153 PF15446 zf-PHD-like PHD/FYVE-zinc-finger like domain 1.7E-66 411 580
PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 2.5E-06 613 654
PF04851 ResIII Type III restriction enzyme, res subunit 3.2E-05 787 950
PF00176 SNF2-rel_dom SNF2-related domain 2.5E-53 799 1073
PF11496 HDA2-3 Class II histone deacetylase complex subunits 2 and 3 1.0E-07 1016 1229
PF00271 Helicase_C Helicase conserved C-terminal domain 4.6E-19 1101 1211
Ophun1|5438 PF00270 DEAD DEAD/DEAH box helicase 4.9E-43 125 314
PF00271 Helicase_C Helicase conserved C-terminal domain 1.1E-25 352 465
Ophun1|5443 PF00271 Helicase_C Helicase conserved C-terminal domain 8.0E-14 398 525
PF04408 HA2 Helicase associated domain (HA2) 2.6E-17 587 677
PF07717 OB_NTP_bind Oligonucleotide/oligosaccharide-binding (OB)-fold 7.0E-21 736 815
Ophun1|5490 PF04851 ResIII Type III restriction enzyme, res subunit 2.6E-09 271 455
PF00270 DEAD DEAD/DEAH box helicase 1.6E-26 272 458
PF02889 Sec63 Sec63 Brl domain 9.1E-81 783 1086
PF00270 DEAD DEAD/DEAH box helicase 7.6E-21 1132 1294
PF04851 ResIII Type III restriction enzyme, res subunit 1.9E-09 1137 1264
PF00271 Helicase_C Helicase conserved C-terminal domain 2.9E-06 1409 1496
PF02889 Sec63 Sec63 Brl domain 1.7E-44 1623 1869
Ophun1|5501 PF00270 DEAD DEAD/DEAH box helicase 2.8E-32 124 288
PF00271 Helicase_C Helicase conserved C-terminal domain 3.5E-25 330 442
Ophun1|5579 PF00270 DEAD DEAD/DEAH box helicase 8.0E-40 110 284
PF00271 Helicase_C Helicase conserved C-terminal domain 1.6E-28 331 436
Ophun1|5626 PF08880 QLQ QLQ 1.9E-10 159 192
PF07529 HSA HSA domain 3.2E-17 396 466
PF04851 ResIII Type III restriction enzyme, res subunit 1.6E-08 560 719
PF00176 SNF2-rel_dom SNF2-related domain 5.4E-78 563 856
PF00271 Helicase_C Helicase conserved C-terminal domain 1.4E-18 880 993
PF14619 SnAC Snf2-ATP coupling, chromatin remodelling complex 1.9E-16 1090 1156
PF00439 Bromodomain Bromodomain 6.6E-18 1301 1373
Ophun1|5670 PF12054 DUF3535 Domain of unknown function (DUF3535) 3.6E-27 13 106
PF00176 SNF2-rel_dom SNF2-related domain 1.5E-63 338 625
PF00271 Helicase_C Helicase conserved C-terminal domain 4.3E-19 682 786
Ophun1|5913 PF00270 DEAD DEAD/DEAH box helicase 1.1E-38 161 353
PF00271 Helicase_C Helicase conserved C-terminal domain 1.8E-25 413 521
Ophun1|6277 PF00270 DEAD DEAD/DEAH box helicase 1.1E-07 283 436
PF00271 Helicase_C Helicase conserved C-terminal domain 4.7E-13 481 607
PF04408 HA2 Helicase associated domain (HA2) 2.1E-21 673 756
PF07717 OB_NTP_bind Oligonucleotide/oligosaccharide-binding (OB)-fold 3.6E-18 815 891
Ophun1|6311 PF17911 Ski2_N Ski2 N-terminal region 5.0E-35 49 194
PF00270 DEAD DEAD/DEAH box helicase 2.6E-16 299 445
PF00271 Helicase_C Helicase conserved C-terminal domain 4.2E-06 635 741
PF13234 rRNA_proc-arch rRNA-processing arch domain 1.8E-27 799 1073
PF08148 DSHCT DSHCT (NUC185) domain 6.5E-48 1100 1269
Ophun1|6336 PF08797 HIRAN HIRAN domain 7.2E-23 137 254
PF04851 ResIII Type III restriction enzyme, res subunit 2.1E-05 385 636
PF00176 SNF2-rel_dom SNF2-related domain 1.0E-70 390 771
PF00270 DEAD DEAD/DEAH box helicase 4.8E-07 466 613
PF00271 Helicase_C Helicase conserved C-terminal domain 8.4E-15 916 1026
Ophun1|6362 PF04851 ResIII Type III restriction enzyme, res subunit 2.1E-06 422 607
PF00176 SNF2-rel_dom SNF2-related domain 4.5E-67 438 744
PF13920 zf-C3HC4_3 Zinc finger, C3HC4 type (RING finger) 2.1E-07 779 838
PF13923 zf-C3HC4_2 Zinc finger, C3HC4 type (RING finger) 5.1E-08 781 813
PF00097 zf-C3HC4 Zinc finger, C3HC4 type (RING finger) 1.6E-07 782 833
PF13445 zf-RING_UBOX RING-type zinc-finger 2.9E-07 782 831
PF00271 Helicase_C Helicase conserved C-terminal domain 2.2E-13 969 1082
Ophun1|6388 PF04851 ResIII Type III restriction enzyme, res subunit 7.2E-06 52 231
PF00270 DEAD DEAD/DEAH box helicase 8.5E-30 53 266
PF00271 Helicase_C Helicase conserved C-terminal domain 5.6E-19 334 448
Ophun1|643 PF00270 DEAD DEAD/DEAH box helicase 1.6E-41 95 271
PF04851 ResIII Type III restriction enzyme, res subunit 1.1E-06 107 265
PF00271 Helicase_C Helicase conserved C-terminal domain 3.2E-19 319 426
Ophun1|655 PF00271 Helicase_C Helicase conserved C-terminal domain 2.3E-17 14 112
Ophun1|6599 PF00270 DEAD DEAD/DEAH box helicase 1.5E-37 79 247
PF04851 ResIII Type III restriction enzyme, res subunit 8.7E-08 95 242
PF00271 Helicase_C Helicase conserved C-terminal domain 5.4E-24 285 393
Ophun1|6690 PF00271 Helicase_C Helicase conserved C-terminal domain 6.1E-11 229 358
PF04408 HA2 Helicase associated domain (HA2) 1.1E-13 420 509
PF07717 OB_NTP_bind Oligonucleotide/oligosaccharide-binding (OB)-fold 1.2E-16 578 655
Ophun1|6696 PF04851 ResIII Type III restriction enzyme, res subunit 3.1E-05 143 260
PF00271 Helicase_C Helicase conserved C-terminal domain 8.5E-17 419 534
PF03368 Dicer_dimer Dicer dimerisation domain 1.7E-18 613 694
PF00636 Ribonuclease_3 Ribonuclease III domain 4.2E-19 1034 1140
PF14622 Ribonucleas_3_3 Ribonuclease-III-like 6.6E-13 1213 1363
PF00636 Ribonuclease_3 Ribonuclease III domain 5.4E-19 1233 1346
Ophun1|7061 PF00270 DEAD DEAD/DEAH box helicase 4.0E-39 330 500
PF00271 Helicase_C Helicase conserved C-terminal domain 9.3E-29 543 699
Ophun1|7088 PF00270 DEAD DEAD/DEAH box helicase 5.3E-09 602 757
PF00271 Helicase_C Helicase conserved C-terminal domain 3.5E-16 834 958
PF04408 HA2 Helicase associated domain (HA2) 6.7E-14 1022 1101
PF07717 OB_NTP_bind Oligonucleotide/oligosaccharide-binding (OB)-fold 9.6E-15 1178 1279
Ophun1|7098 PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 2.8E-08 269 328
PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 3.9E-16 367 417
PF00176 SNF2-rel_dom SNF2-related domain 6.0E-60 470 737
PF11496 HDA2-3 Class II histone deacetylase complex subunits 2 and 3 1.1E-08 688 904
PF00271 Helicase_C Helicase conserved C-terminal domain 1.5E-18 765 877
PF18196 Cdh1_DBD_1 Chromodomain helicase DNA-binding domain 1 5.6E-06 1092 1160
PF13907 DUF4208 Domain of unknown function (DUF4208) 4.6E-14 1568 1666
Ophun1|7218 PF04851 ResIII Type III restriction enzyme, res subunit 2.3E-07 775 947
PF00270 DEAD DEAD/DEAH box helicase 8.2E-22 779 951
PF00271 Helicase_C Helicase conserved C-terminal domain 4.9E-14 991 1097
PF16124 RecQ_Zn_bind RecQ zinc-binding 2.6E-14 1110 1175
PF09382 RQC RQC domain 6.2E-13 1181 1292
Ophun1|7271 PF11661 DUF2986 Protein of unknown function (DUF2986) 1.2E-04 6 37
PF00270 DEAD DEAD/DEAH box helicase 4.1E-46 305 511
PF00271 Helicase_C Helicase conserved C-terminal domain 5.0E-27 550 657
Ophun1|7390 PF00270 DEAD DEAD/DEAH box helicase 1.6E-47 219 405
PF00271 Helicase_C Helicase conserved C-terminal domain 3.6E-32 440 549
Ophun1|7417 PF00270 DEAD DEAD/DEAH box helicase 2.3E-15 1096 1257
PF04851 ResIII Type III restriction enzyme, res subunit 1.4E-10 1098 1256
PF00271 Helicase_C Helicase conserved C-terminal domain 2.1E-07 1606 1677
Ophun1|931 PF00270 DEAD DEAD/DEAH box helicase 1.7E-07 383 548
PF00271 Helicase_C Helicase conserved C-terminal domain 1.7E-11 689 778
PF04408 HA2 Helicase associated domain (HA2) 1.2E-24 840 957
PF07717 OB_NTP_bind Oligonucleotide/oligosaccharide-binding (OB)-fold 2.4E-11 1024 1129
Ophun1|986 PF03081 Exo70 Exo70 exocyst complex subunit 2.1E-76 88 432
PF00270 DEAD DEAD/DEAH box helicase 3.9E-13 783 896
PF00271 Helicase_C Helicase conserved C-terminal domain 5.0E-10 978 1087
PF09369 MZB MrfA Zn-binding domain 2.8E-20 1351 1440

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