© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| PFAM domain | PF00076 |
| Short name | RRM_1 |
| Long name | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) |
| Proteins with at least one of this domain | 57 |
| Total domain count | 83 |
| More information | PFAM website |
| Short name | Long name | E-value | Start | End | Name | ||
|---|---|---|---|---|---|---|---|
| protein ID | PFAM | ||||||
| Ophun1|101 | PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 5.7E-14 | 11 | 82 | |
| Ophun1|1023 | PF00929 | RNase_T | Exonuclease | 2.6E-06 | 19 | 133 | |
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 5.9E-08 | 255 | 322 | ||
| PF00641 | zf-RanBP | Zn-finger in Ran binding protein and others | 5.7E-11 | 350 | 377 | ||
| PF00641 | zf-RanBP | Zn-finger in Ran binding protein and others | 4.3E-07 | 430 | 459 | ||
| Ophun1|1099 | PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 1.4E-15 | 52 | 121 | |
| Ophun1|1124 | PF16131 | Torus | Torus domain | 4.5E-41 | 48 | 153 | |
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 1.2E-07 | 189 | 240 | ||
| Ophun1|1523 | PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 1.4E-13 | 154 | 223 | |
| PF10375 | GRAB | GRAB domain | 1.5E-23 | 792 | 839 | ||
| Ophun1|159 | PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 4.0E-10 | 311 | 374 | |
| Ophun1|1775 | PF12220 | U1snRNP70_N | U1 small nuclear ribonucleoprotein of 70kDa MW N terminal | 6.6E-22 | 4 | 91 | |
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 3.0E-14 | 129 | 205 | ||
| Ophun1|1777 | PF02136 | NTF2 | Nuclear transport factor 2 (NTF2) domain | 7.8E-23 | 44 | 158 | |
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 4.1E-05 | 420 | 481 | ||
| Ophun1|2061 | PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 9.0E-15 | 158 | 224 | |
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 1.9E-19 | 258 | 327 | ||
| PF15519 | RBM39linker | linker between RRM2 and RRM3 domains in RBM39 protein | 2.3E-23 | 384 | 458 | ||
| Ophun1|2341 | PF13893 | RRM_5 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 1.7E-06 | 17 | 121 | |
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 3.1E-07 | 29 | 100 | ||
| Ophun1|2610 | PF14570 | zf-RING_4 | RING/Ubox like zinc-binding domain | 9.8E-20 | 15 | 62 | |
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 2.3E-07 | 123 | 200 | ||
| Ophun1|2662 | PF12353 | eIF3g | Eukaryotic translation initiation factor 3 subunit G | 2.2E-43 | 29 | 155 | |
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 1.9E-15 | 218 | 283 | ||
| Ophun1|2831 | PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 6.3E-15 | 50 | 118 | |
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 4.0E-12 | 250 | 331 | ||
| Ophun1|2846 | PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 1.4E-17 | 266 | 335 | |
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 1.9E-14 | 369 | 438 | ||
| Ophun1|2974 | PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 4.4E-15 | 15 | 85 | |
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 4.4E-15 | 103 | 172 | ||
| Ophun1|300 | PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 3.9E-14 | 73 | 141 | |
| Ophun1|3078 | PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 2.0E-10 | 415 | 486 | |
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 2.9E-05 | 546 | 606 | ||
| Ophun1|3118 | PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 6.5E-06 | 150 | 203 | |
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 7.2E-10 | 321 | 392 | ||
| Ophun1|3129 | PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 4.5E-15 | 56 | 125 | |
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 1.4E-13 | 161 | 229 | ||
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 3.9E-14 | 338 | 397 | ||
| Ophun1|3419 | PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 3.5E-10 | 247 | 306 | |
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 1.4E-08 | 335 | 397 | ||
| Ophun1|3687 | PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 9.4E-14 | 35 | 104 | |
| Ophun1|3840 | PF00009 | GTP_EFTU | Elongation factor Tu GTP binding domain | 1.4E-67 | 18 | 345 | |
| PF03144 | GTP_EFTU_D2 | Elongation factor Tu domain 2 | 1.5E-11 | 396 | 471 | ||
| PF14492 | EFG_III | Elongation Factor G, domain III | 3.2E-11 | 488 | 549 | ||
| PF03764 | EFG_IV | Elongation factor G, domain IV | 3.4E-31 | 606 | 721 | ||
| PF00679 | EFG_C | Elongation factor G C-terminus | 3.7E-20 | 725 | 807 | ||
| PF01480 | PWI | PWI domain | 1.3E-06 | 871 | 938 | ||
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 3.6E-05 | 1195 | 1250 | ||
| Ophun1|4123 | PF10378 | RRM | Putative RRM domain | 1.6E-07 | 81 | 121 | |
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 8.6E-11 | 294 | 348 | ||
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 2.2E-11 | 519 | 575 | ||
| Ophun1|4385 | PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 4.8E-17 | 10 | 77 | |
| PF14327 | CSTF2_hinge | Hinge domain of cleavage stimulation factor subunit 2 | 6.2E-33 | 119 | 198 | ||
| Ophun1|4526 | PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 3.4E-15 | 124 | 172 | |
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 5.6E-16 | 207 | 264 | ||
| Ophun1|4533 | PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 7.2E-16 | 74 | 143 | |
| Ophun1|4568 | PF03467 | Smg4_UPF3 | Smg-4/UPF3 family | 5.1E-47 | 59 | 229 | |
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 8.9E-06 | 479 | 522 | ||
| Ophun1|4778 | PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 1.1E-07 | 15 | 78 | |
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 1.1E-06 | 163 | 225 | ||
| Ophun1|478 | PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 1.2E-12 | 378 | 440 | |
| Ophun1|4831 | PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 1.2E-20 | 32 | 94 | |
| Ophun1|4870 | PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 1.3E-14 | 106 | 174 | |
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 2.2E-15 | 244 | 315 | ||
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 2.3E-17 | 408 | 476 | ||
| Ophun1|4879 | PF00160 | Pro_isomerase | Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD | 1.2E-32 | 3 | 169 | |
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 4.5E-16 | 252 | 322 | ||
| Ophun1|4983 | PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 1.3E-10 | 196 | 253 | |
| Ophun1|5015 | PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 9.5E-21 | 36 | 106 | |
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 4.2E-14 | 163 | 226 | ||
| Ophun1|5125 | PF13893 | RRM_5 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 5.5E-02 | 52 | 140 | |
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 2.0E-17 | 63 | 132 | ||
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 1.8E-17 | 151 | 219 | ||
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 1.1E-20 | 244 | 312 | ||
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 1.5E-06 | 347 | 379 | ||
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 5.3E-08 | 417 | 454 | ||
| PF00658 | PABP | Poly-adenylate binding protein, unique domain | 1.0E-26 | 667 | 731 | ||
| Ophun1|5239 | PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 2.9E-10 | 9 | 72 | |
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 1.5E-10 | 106 | 169 | ||
| Ophun1|5381 | PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 1.3E-04 | 321 | 372 | |
| Ophun1|541 | PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 5.6E-09 | 6 | 69 | |
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 1.2E-18 | 306 | 373 | ||
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 8.8E-10 | 488 | 550 | ||
| Ophun1|5425 | PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 7.3E-13 | 992 | 1061 | |
| Ophun1|5600 | PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 9.6E-17 | 240 | 309 | |
| Ophun1|5622 | PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 6.5E-15 | 73 | 143 | |
| Ophun1|5724 | PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 1.5E-12 | 40 | 109 | |
| PF00400 | WD40 | WD domain, G-beta repeat | 5.3E-04 | 390 | 422 | ||
| Ophun1|5804 | PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 1.1E-12 | 81 | 147 | |
| Ophun1|589 | PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 2.1E-04 | 181 | 251 | |
| PF01424 | R3H | R3H domain | 3.6E-09 | 323 | 379 | ||
| Ophun1|6065 | PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 1.6E-16 | 16 | 82 | |
| Ophun1|6124 | PF04818 | CID | CID domain | 8.6E-11 | 24 | 143 | |
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 7.4E-06 | 446 | 495 | ||
| Ophun1|6180 | PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 4.6E-21 | 4 | 73 | |
| Ophun1|6246 | PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 2.1E-09 | 330 | 382 | |
| Ophun1|6267 | PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 7.1E-05 | 72 | 132 | |
| Ophun1|6300 | PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 6.0E-10 | 235 | 299 | |
| Ophun1|6582 | PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 1.3E-19 | 77 | 146 | |
| Ophun1|6624 | PF05383 | La | La domain | 9.3E-19 | 181 | 238 | |
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 4.2E-08 | 287 | 342 | ||
| Ophun1|6651 | PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 2.5E-08 | 31 | 95 | |
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 4.1E-14 | 123 | 193 | ||
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 7.4E-16 | 258 | 321 | ||
| Ophun1|7027 | PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 2.0E-15 | 98 | 167 | |
| PF13865 | FoP_duplication | C-terminal duplication domain of Friend of PRMT1 | 2.1E-05 | 232 | 287 | ||
| Ophun1|7187 | PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 1.5E-05 | 9 | 69 | |
| Ophun1|7533 | PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 2.8E-09 | 597 | 664 | |
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 7.6E-10 | 674 | 737 | ||
| PF13893 | RRM_5 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 9.1E-06 | 759 | 845 | ||
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 4.7E-16 | 766 | 832 | ||
| PF16842 | RRM_occluded | Occluded RNA-recognition motif | 1.1E-27 | 878 | 954 | ||
| Ophun1|825 | PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 6.3E-07 | 87 | 121 |