Fungal Genomics

at Utrecht University

PFAM Domain


General information

PFAM domainPF00076
Short nameRRM_1
Long nameRNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Proteins with at least one of this domain57
Total domain count83
More informationPFAM website

Proteins with this PFAM domain

Note: all PFAM domains are shown for these proteins
Short name Long name E-value Start End Name
protein ID PFAM
Ophun1|101 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 5.7E-14 11 82
Ophun1|1023 PF00929 RNase_T Exonuclease 2.6E-06 19 133
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 5.9E-08 255 322
PF00641 zf-RanBP Zn-finger in Ran binding protein and others 5.7E-11 350 377
PF00641 zf-RanBP Zn-finger in Ran binding protein and others 4.3E-07 430 459
Ophun1|1099 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.4E-15 52 121
Ophun1|1124 PF16131 Torus Torus domain 4.5E-41 48 153
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.2E-07 189 240
Ophun1|1523 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.4E-13 154 223
PF10375 GRAB GRAB domain 1.5E-23 792 839
Ophun1|159 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4.0E-10 311 374
Ophun1|1775 PF12220 U1snRNP70_N U1 small nuclear ribonucleoprotein of 70kDa MW N terminal 6.6E-22 4 91
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3.0E-14 129 205
Ophun1|1777 PF02136 NTF2 Nuclear transport factor 2 (NTF2) domain 7.8E-23 44 158
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4.1E-05 420 481
Ophun1|2061 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9.0E-15 158 224
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.9E-19 258 327
PF15519 RBM39linker linker between RRM2 and RRM3 domains in RBM39 protein 2.3E-23 384 458
Ophun1|2341 PF13893 RRM_5 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.7E-06 17 121
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3.1E-07 29 100
Ophun1|2610 PF14570 zf-RING_4 RING/Ubox like zinc-binding domain 9.8E-20 15 62
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.3E-07 123 200
Ophun1|2662 PF12353 eIF3g Eukaryotic translation initiation factor 3 subunit G 2.2E-43 29 155
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.9E-15 218 283
Ophun1|2831 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 6.3E-15 50 118
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4.0E-12 250 331
Ophun1|2846 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.4E-17 266 335
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.9E-14 369 438
Ophun1|2974 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4.4E-15 15 85
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4.4E-15 103 172
Ophun1|300 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3.9E-14 73 141
Ophun1|3078 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.0E-10 415 486
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.9E-05 546 606
Ophun1|3118 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 6.5E-06 150 203
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 7.2E-10 321 392
Ophun1|3129 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4.5E-15 56 125
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.4E-13 161 229
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3.9E-14 338 397
Ophun1|3419 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3.5E-10 247 306
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.4E-08 335 397
Ophun1|3687 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9.4E-14 35 104
Ophun1|3840 PF00009 GTP_EFTU Elongation factor Tu GTP binding domain 1.4E-67 18 345
PF03144 GTP_EFTU_D2 Elongation factor Tu domain 2 1.5E-11 396 471
PF14492 EFG_III Elongation Factor G, domain III 3.2E-11 488 549
PF03764 EFG_IV Elongation factor G, domain IV 3.4E-31 606 721
PF00679 EFG_C Elongation factor G C-terminus 3.7E-20 725 807
PF01480 PWI PWI domain 1.3E-06 871 938
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3.6E-05 1195 1250
Ophun1|4123 PF10378 RRM Putative RRM domain 1.6E-07 81 121
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8.6E-11 294 348
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.2E-11 519 575
Ophun1|4385 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4.8E-17 10 77
PF14327 CSTF2_hinge Hinge domain of cleavage stimulation factor subunit 2 6.2E-33 119 198
Ophun1|4526 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3.4E-15 124 172
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 5.6E-16 207 264
Ophun1|4533 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 7.2E-16 74 143
Ophun1|4568 PF03467 Smg4_UPF3 Smg-4/UPF3 family 5.1E-47 59 229
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8.9E-06 479 522
Ophun1|4778 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.1E-07 15 78
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.1E-06 163 225
Ophun1|478 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.2E-12 378 440
Ophun1|4831 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.2E-20 32 94
Ophun1|4870 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.3E-14 106 174
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.2E-15 244 315
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.3E-17 408 476
Ophun1|4879 PF00160 Pro_isomerase Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 1.2E-32 3 169
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4.5E-16 252 322
Ophun1|4983 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.3E-10 196 253
Ophun1|5015 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9.5E-21 36 106
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4.2E-14 163 226
Ophun1|5125 PF13893 RRM_5 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 5.5E-02 52 140
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.0E-17 63 132
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.8E-17 151 219
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.1E-20 244 312
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.5E-06 347 379
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 5.3E-08 417 454
PF00658 PABP Poly-adenylate binding protein, unique domain 1.0E-26 667 731
Ophun1|5239 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.9E-10 9 72
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.5E-10 106 169
Ophun1|5381 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.3E-04 321 372
Ophun1|541 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 5.6E-09 6 69
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.2E-18 306 373
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8.8E-10 488 550
Ophun1|5425 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 7.3E-13 992 1061
Ophun1|5600 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9.6E-17 240 309
Ophun1|5622 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 6.5E-15 73 143
Ophun1|5724 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.5E-12 40 109
PF00400 WD40 WD domain, G-beta repeat 5.3E-04 390 422
Ophun1|5804 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.1E-12 81 147
Ophun1|589 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.1E-04 181 251
PF01424 R3H R3H domain 3.6E-09 323 379
Ophun1|6065 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.6E-16 16 82
Ophun1|6124 PF04818 CID CID domain 8.6E-11 24 143
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 7.4E-06 446 495
Ophun1|6180 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4.6E-21 4 73
Ophun1|6246 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.1E-09 330 382
Ophun1|6267 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 7.1E-05 72 132
Ophun1|6300 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 6.0E-10 235 299
Ophun1|6582 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.3E-19 77 146
Ophun1|6624 PF05383 La La domain 9.3E-19 181 238
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4.2E-08 287 342
Ophun1|6651 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.5E-08 31 95
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4.1E-14 123 193
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 7.4E-16 258 321
Ophun1|7027 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.0E-15 98 167
PF13865 FoP_duplication C-terminal duplication domain of Friend of PRMT1 2.1E-05 232 287
Ophun1|7187 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.5E-05 9 69
Ophun1|7533 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.8E-09 597 664
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 7.6E-10 674 737
PF13893 RRM_5 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9.1E-06 759 845
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4.7E-16 766 832
PF16842 RRM_occluded Occluded RNA-recognition motif 1.1E-27 878 954
Ophun1|825 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 6.3E-07 87 121

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