Fungal Genomics

at Utrecht University

PFAM Domain

General information

PFAM domainPF00004
Short nameAAA
Long nameATPase family associated with various cellular activities (AAA)
Proteins with at least one of this domain44
Total domain count54
More informationPFAM website

Proteins with this PFAM domain

Note: all PFAM domains are shown for these proteins
Short name Long name E-value Start End Name
protein ID PFAM
Ophun1|1052 PF08740 BCS1_N BCS1 N terminal 3.7E-53 47 240
PF00004 AAA ATPase family associated with various cellular activities (AAA) 3.1E-09 278 342
PF00004 AAA ATPase family associated with various cellular activities (AAA) 7.7E-06 381 427
Ophun1|1263 PF16450 Prot_ATP_ID_OB Proteasomal ATPase OB C-terminal domain 2.9E-13 125 179
PF00004 AAA ATPase family associated with various cellular activities (AAA) 8.6E-39 238 370
PF17862 AAA_lid_3 AAA+ lid domain 2.2E-11 393 436
Ophun1|1486 PF00004 AAA ATPase family associated with various cellular activities (AAA) 3.3E-05 751 860
PF00004 AAA ATPase family associated with various cellular activities (AAA) 2.3E-43 1012 1156
Ophun1|1516 PF05496 RuvB_N Holliday junction DNA helicase RuvB P-loop domain 3.0E-10 123 241
PF00004 AAA ATPase family associated with various cellular activities (AAA) 2.6E-13 155 262
PF16193 AAA_assoc_2 AAA C-terminal domain 1.4E-19 290 358
PF12002 MgsA_C MgsA AAA+ ATPase C terminal 1.9E-56 359 520
Ophun1|1671 PF01569 PAP2 PAP2 superfamily 5.8E-19 98 218
PF00450 Peptidase_S10 Serine carboxypeptidase 3.4E-102 595 942
PF03215 Rad17 Rad17 P-loop domain 6.5E-07 1001 1085
PF13177 DNA_pol3_delta2 DNA polymerase III, delta subunit 2.2E-09 1021 1170
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.7E-14 1038 1167
PF08542 Rep_fac_C Replication factor C C-terminal domain 1.0E-13 1254 1340
Ophun1|186 PF16450 Prot_ATP_ID_OB Proteasomal ATPase OB C-terminal domain 2.3E-16 105 181
PF00004 AAA ATPase family associated with various cellular activities (AAA) 2.1E-39 240 372
PF17862 AAA_lid_3 AAA+ lid domain 7.3E-07 395 435
Ophun1|2109 PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.9E-36 727 853
PF17862 AAA_lid_3 AAA+ lid domain 4.8E-09 876 912
Ophun1|2247 PF16450 Prot_ATP_ID_OB Proteasomal ATPase OB C-terminal domain 2.7E-11 89 144
PF05673 DUF815 Protein of unknown function (DUF815) 4.6E-06 162 267
PF07728 AAA_5 AAA domain (dynein-related subfamily) 3.0E-08 201 323
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.5E-44 202 334
PF07724 AAA_2 AAA domain (Cdc48 subfamily) 1.5E-07 202 295
Ophun1|2286 PF01426 BAH BAH domain 4.6E-09 81 199
PF13191 AAA_16 AAA ATPase domain 5.1E-10 323 461
PF13401 AAA_22 AAA domain 5.5E-08 345 456
PF00004 AAA ATPase family associated with various cellular activities (AAA) 7.2E-16 349 491
PF17872 AAA_lid_10 AAA lid domain 2.9E-10 522 557
Ophun1|2360 PF16450 Prot_ATP_ID_OB Proteasomal ATPase OB C-terminal domain 4.2E-07 56 104
PF07728 AAA_5 AAA domain (dynein-related subfamily) 1.1E-06 168 289
PF00004 AAA ATPase family associated with various cellular activities (AAA) 2.6E-43 169 301
PF07724 AAA_2 AAA domain (Cdc48 subfamily) 1.2E-06 169 262
PF17862 AAA_lid_3 AAA+ lid domain 2.5E-13 325 367
Ophun1|2443 PF02861 Clp_N Clp amino terminal domain, pathogenicity island component 5.0E-04 110 157
PF00004 AAA ATPase family associated with various cellular activities (AAA) 3.9E-14 221 338
PF17871 AAA_lid_9 AAA lid domain 7.2E-31 362 462
PF00158 Sigma54_activat Sigma-54 interaction domain 3.2E-06 627 745
PF07724 AAA_2 AAA domain (Cdc48 subfamily) 2.2E-44 630 791
PF07728 AAA_5 AAA domain (dynein-related subfamily) 1.1E-09 631 749
PF00004 AAA ATPase family associated with various cellular activities (AAA) 5.1E-09 632 750
PF10431 ClpB_D2-small C-terminal, D2-small domain, of ClpB protein 1.7E-23 798 880
Ophun1|3063 PF13191 AAA_16 AAA ATPase domain 4.1E-10 128 225
PF13401 AAA_22 AAA domain 1.2E-10 153 282
PF00004 AAA ATPase family associated with various cellular activities (AAA) 6.5E-06 157 292
PF17872 AAA_lid_10 AAA lid domain 5.6E-06 338 384
Ophun1|3386 PF04212 MIT MIT (microtubule interacting and transport) domain 8.1E-15 7 71
PF05496 RuvB_N Holliday junction DNA helicase RuvB P-loop domain 9.1E-07 156 239
PF00004 AAA ATPase family associated with various cellular activities (AAA) 7.0E-42 164 292
PF09336 Vps4_C Vps4 C terminal oligomerisation domain 1.4E-24 366 426
Ophun1|3535 PF08433 KTI12 Chromatin associated protein KTI12 2.2E-63 167 446
PF02359 CDC48_N Cell division protein 48 (CDC48), N-terminal domain 1.6E-17 508 589
PF02933 CDC48_2 Cell division protein 48 (CDC48), domain 2 2.6E-07 610 671
PF07728 AAA_5 AAA domain (dynein-related subfamily) 7.1E-06 723 842
PF00004 AAA ATPase family associated with various cellular activities (AAA) 2.2E-47 724 853
PF07724 AAA_2 AAA domain (Cdc48 subfamily) 4.3E-07 724 821
PF17862 AAA_lid_3 AAA+ lid domain 7.2E-13 876 915
PF00004 AAA ATPase family associated with various cellular activities (AAA) 3.3E-47 998 1131
PF17862 AAA_lid_3 AAA+ lid domain 2.2E-06 1153 1192
PF09336 Vps4_C Vps4 C terminal oligomerisation domain 1.8E-04 1196 1247
Ophun1|354 PF00004 AAA ATPase family associated with various cellular activities (AAA) 7.1E-17 467 585
Ophun1|3560 PF00628 PHD PHD-finger 1.1E-10 639 686
PF13831 PHD_2 PHD-finger 4.5E-08 652 685
PF13191 AAA_16 AAA ATPase domain 3.7E-09 738 895
PF13401 AAA_22 AAA domain 5.6E-08 759 901
PF00004 AAA ATPase family associated with various cellular activities (AAA) 9.6E-08 762 919
Ophun1|3713 PF12775 AAA_7 P-loop containing dynein motor region 1.3E-06 275 322
PF13604 AAA_30 AAA domain 6.8E-22 279 488
PF05970 PIF1 PIF1-like helicase 4.6E-47 280 489
PF13401 AAA_22 AAA domain 1.1E-07 294 423
PF13245 AAA_19 AAA domain 3.7E-12 295 431
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.4E-04 298 390
PF05970 PIF1 PIF1-like helicase 1.6E-13 506 586
Ophun1|3740 PF02933 CDC48_2 Cell division protein 48 (CDC48), domain 2 4.7E-05 205 246
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.0E-38 350 491
PF17862 AAA_lid_3 AAA+ lid domain 5.8E-09 518 553
PF00004 AAA ATPase family associated with various cellular activities (AAA) 2.6E-09 632 744
Ophun1|3952 PF13173 AAA_14 AAA domain 2.3E-06 65 168
PF00004 AAA ATPase family associated with various cellular activities (AAA) 4.5E-11 66 183
PF13177 DNA_pol3_delta2 DNA polymerase III, delta subunit 2.3E-06 106 187
PF08542 Rep_fac_C Replication factor C C-terminal domain 2.2E-19 252 338
Ophun1|399 PF06480 FtsH_ext FtsH Extracellular 1.5E-09 159 256
PF00004 AAA ATPase family associated with various cellular activities (AAA) 2.4E-41 360 493
PF17862 AAA_lid_3 AAA+ lid domain 4.7E-12 523 561
PF01434 Peptidase_M41 Peptidase family M41 8.4E-65 577 756
Ophun1|4019 PF00004 AAA ATPase family associated with various cellular activities (AAA) 5.8E-40 220 351
PF17862 AAA_lid_3 AAA+ lid domain 3.7E-07 375 416
Ophun1|4053 PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.9E-04 68 137
PF08142 AARP2CN AARP2CN (NUC121) domain 1.1E-26 214 301
PF04950 RIBIOP_C 40S ribosome biogenesis protein Tsr1 and BMS1 C-terminal 1.8E-85 655 964
Ophun1|463 PF00004 AAA ATPase family associated with various cellular activities (AAA) 3.4E-12 255 383
PF17862 AAA_lid_3 AAA+ lid domain 2.4E-08 411 438
PF07728 AAA_5 AAA domain (dynein-related subfamily) 1.5E-05 556 673
PF00004 AAA ATPase family associated with various cellular activities (AAA) 7.4E-45 557 686
Ophun1|4772 PF02190 LON_substr_bdg ATP-dependent protease La (LON) substrate-binding domain 5.9E-25 8 257
PF00004 AAA ATPase family associated with various cellular activities (AAA) 7.3E-22 476 614
PF07728 AAA_5 AAA domain (dynein-related subfamily) 1.8E-07 476 611
PF05362 Lon_C Lon protease (S16) C-terminal proteolytic domain 5.2E-68 702 905
PF13541 ChlI Subunit ChlI of Mg-chelatase 1.4E-06 751 877
Ophun1|4815 PF02190 LON_substr_bdg ATP-dependent protease La (LON) substrate-binding domain 2.5E-30 175 472
PF00004 AAA ATPase family associated with various cellular activities (AAA) 5.9E-21 624 761
PF07728 AAA_5 AAA domain (dynein-related subfamily) 1.4E-06 624 757
PF05362 Lon_C Lon protease (S16) C-terminal proteolytic domain 2.4E-64 899 1104
PF13541 ChlI Subunit ChlI of Mg-chelatase 2.8E-07 955 1074
Ophun1|4945 PF00004 AAA ATPase family associated with various cellular activities (AAA) 4.2E-15 728 843
Ophun1|5110 PF00533 BRCT BRCA1 C Terminus (BRCT) domain 1.7E-13 297 371
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.1E-08 488 594
PF08519 RFC1 Replication factor RFC1 C terminal domain 6.0E-56 766 918
Ophun1|5111 PF00252 Ribosomal_L16 Ribosomal protein L16p/L10e 6.1E-31 71 199
PF00004 AAA ATPase family associated with various cellular activities (AAA) 7.7E-06 260 401
PF13177 DNA_pol3_delta2 DNA polymerase III, delta subunit 2.8E-08 261 407
Ophun1|5376 PF00004 AAA ATPase family associated with various cellular activities (AAA) 4.2E-11 117 249
PF17871 AAA_lid_9 AAA lid domain 9.3E-36 255 357
PF07724 AAA_2 AAA domain (Cdc48 subfamily) 1.6E-43 511 683
PF07728 AAA_5 AAA domain (dynein-related subfamily) 2.0E-08 516 634
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.3E-05 518 612
PF10431 ClpB_D2-small C-terminal, D2-small domain, of ClpB protein 3.6E-22 693 769
Ophun1|5551 PF08740 BCS1_N BCS1 N terminal 2.9E-10 86 144
PF08740 BCS1_N BCS1 N terminal 4.6E-11 146 198
PF00004 AAA ATPase family associated with various cellular activities (AAA) 9.3E-09 236 309
PF00004 AAA ATPase family associated with various cellular activities (AAA) 7.5E-06 396 442
Ophun1|5633 PF07728 AAA_5 AAA domain (dynein-related subfamily) 4.5E-20 310 433
PF17867 AAA_lid_7 Midasin AAA lid domain 2.0E-21 460 575
PF07728 AAA_5 AAA domain (dynein-related subfamily) 1.4E-05 643 688
PF07728 AAA_5 AAA domain (dynein-related subfamily) 2.5E-06 800 898
PF17865 AAA_lid_5 Midasin AAA lid domain 7.0E-31 912 1016
PF07728 AAA_5 AAA domain (dynein-related subfamily) 1.2E-19 1089 1224
PF17867 AAA_lid_7 Midasin AAA lid domain 1.3E-13 1236 1331
PF07728 AAA_5 AAA domain (dynein-related subfamily) 8.2E-07 1380 1429
PF07728 AAA_5 AAA domain (dynein-related subfamily) 7.7E-14 1477 1579
PF00004 AAA ATPase family associated with various cellular activities (AAA) 2.7E-04 1761 1796
PF07726 AAA_3 ATPase family associated with various cellular activities (AAA) 6.5E-09 1761 1900
PF07728 AAA_5 AAA domain (dynein-related subfamily) 5.2E-18 1761 1899
PF17867 AAA_lid_7 Midasin AAA lid domain 1.0E-11 1911 2007
Ophun1|5665 PF07728 AAA_5 AAA domain (dynein-related subfamily) 7.3E-05 348 415
PF00004 AAA ATPase family associated with various cellular activities (AAA) 2.0E-41 349 478
PF17862 AAA_lid_3 AAA+ lid domain 5.8E-10 501 543
PF01434 Peptidase_M41 Peptidase family M41 4.2E-52 559 739
Ophun1|5729 PF09282 Mago-bind Mago binding 6.5E-13 102 128
PF16450 Prot_ATP_ID_OB Proteasomal ATPase OB C-terminal domain 4.7E-07 349 392
PF07728 AAA_5 AAA domain (dynein-related subfamily) 1.1E-04 449 570
PF00004 AAA ATPase family associated with various cellular activities (AAA) 3.5E-42 450 583
PF17862 AAA_lid_3 AAA+ lid domain 9.3E-10 605 648
Ophun1|6340 PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.1E-42 631 766
PF17862 AAA_lid_3 AAA+ lid domain 2.7E-08 791 824
Ophun1|6408 PF08740 BCS1_N BCS1 N terminal 9.1E-38 32 211
PF00004 AAA ATPase family associated with various cellular activities (AAA) 2.4E-17 247 371
Ophun1|6455 PF00004 AAA ATPase family associated with various cellular activities (AAA) 2.0E-08 582 731
Ophun1|6535 PF00004 AAA ATPase family associated with various cellular activities (AAA) 4.9E-08 252 372
PF00004 AAA ATPase family associated with various cellular activities (AAA) 2.8E-38 513 651
PF17862 AAA_lid_3 AAA+ lid domain 5.5E-11 674 714
Ophun1|6634 PF00004 AAA ATPase family associated with various cellular activities (AAA) 7.8E-11 284 412
PF07728 AAA_5 AAA domain (dynein-related subfamily) 2.9E-05 284 364
Ophun1|6795 PF06068 TIP49 TIP49 P-loop domain 5.3E-154 33 375
PF00004 AAA ATPase family associated with various cellular activities (AAA) 2.5E-06 85 137
PF17856 TIP49_C TIP49 AAA-lid domain 2.7E-15 381 446
Ophun1|6922 PF03215 Rad17 Rad17 P-loop domain 9.0E-09 29 90
PF13177 DNA_pol3_delta2 DNA polymerase III, delta subunit 1.2E-09 50 200
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.2E-15 69 196
PF08542 Rep_fac_C Replication factor C C-terminal domain 1.8E-20 283 370
Ophun1|6958 PF06068 TIP49 TIP49 P-loop domain 3.0E-163 15 366
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.5E-06 67 119
PF17856 TIP49_C TIP49 AAA-lid domain 1.9E-18 375 449
Ophun1|7101 PF09262 PEX-1N Peroxisome biogenesis factor 1, N-terminal 1.8E-25 123 214
PF07693 KAP_NTPase KAP family P-loop domain 4.2E-04 513 584
PF12775 AAA_7 P-loop containing dynein motor region 2.1E-06 518 604
PF00004 AAA ATPase family associated with various cellular activities (AAA) 6.3E-10 528 654
PF00004 AAA ATPase family associated with various cellular activities (AAA) 6.8E-43 859 985
PF17862 AAA_lid_3 AAA+ lid domain 2.6E-10 1017 1049
Ophun1|7295 PF07724 AAA_2 AAA domain (Cdc48 subfamily) 2.2E-31 189 432
PF07728 AAA_5 AAA domain (dynein-related subfamily) 8.0E-06 191 267
PF00004 AAA ATPase family associated with various cellular activities (AAA) 6.3E-12 192 296
PF10431 ClpB_D2-small C-terminal, D2-small domain, of ClpB protein 8.7E-10 439 510
Ophun1|977 PF00004 AAA ATPase family associated with various cellular activities (AAA) 3.9E-18 105 194
PF17862 AAA_lid_3 AAA+ lid domain 2.7E-09 218 254

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