Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|975
Gene name
Locationscaffold_13:14003..14763
Strand+
Gene length (bp)760
Transcript length (bp)702
Coding sequence length (bp)699
Protein length (aa) 233

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF01183 Glyco_hydro_25 Glycosyl hydrolases family 25 7.7E-33 26 208

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|D4ANU4|LYS_ARTBC N,O-diacetylmuramidase OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_05911 PE=1 SV=1 15 230 2.0E-52
sp|P00721|LYS_CHASP N,O-diacetylmuramidase OS=Chalaropsis sp. PE=1 SV=1 22 227 4.0E-50
sp|P25310|LYSM1_STRGL Lysozyme M1 OS=Streptomyces globisporus GN=acm PE=1 SV=1 19 204 7.0E-43
sp|P26836|LYS_CLOPE Probable autolytic lysozyme OS=Clostridium perfringens (strain 13 / Type A) GN=lyc PE=3 SV=2 22 206 6.0E-11
sp|P34020|LYS_CLOAB Autolytic lysozyme OS=Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) GN=lyc PE=1 SV=1 22 205 1.0E-09
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Swissprot ID Swissprot Description Start End E-value
sp|D4ANU4|LYS_ARTBC N,O-diacetylmuramidase OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_05911 PE=1 SV=1 15 230 2.0E-52
sp|P00721|LYS_CHASP N,O-diacetylmuramidase OS=Chalaropsis sp. PE=1 SV=1 22 227 4.0E-50
sp|P25310|LYSM1_STRGL Lysozyme M1 OS=Streptomyces globisporus GN=acm PE=1 SV=1 19 204 7.0E-43
sp|P26836|LYS_CLOPE Probable autolytic lysozyme OS=Clostridium perfringens (strain 13 / Type A) GN=lyc PE=3 SV=2 22 206 6.0E-11
sp|P34020|LYS_CLOAB Autolytic lysozyme OS=Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) GN=lyc PE=1 SV=1 22 205 1.0E-09
sp|P76421|YEGX_ECOLI Uncharacterized protein YegX OS=Escherichia coli (strain K12) GN=yegX PE=3 SV=2 13 224 2.0E-09
sp|Q8X7H0|YEGX_ECO57 Uncharacterized protein YegX OS=Escherichia coli O157:H7 GN=yegX PE=3 SV=2 13 158 3.0E-09
sp|Q8FFY2|YEGX_ECOL6 Uncharacterized protein YegX OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=yegX PE=3 SV=2 13 224 7.0E-09
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GO

GO Term Description Terminal node
GO:0003796 lysozyme activity Yes
GO:0009253 peptidoglycan catabolic process Yes
GO:0016998 cell wall macromolecule catabolic process Yes
GO:0009987 cellular process No
GO:0043170 macromolecule metabolic process No
GO:0061783 peptidoglycan muralytic activity No
GO:0071704 organic substance metabolic process No
GO:0008150 biological_process No
GO:0044260 cellular macromolecule metabolic process No
GO:0003674 molecular_function No
GO:0044237 cellular metabolic process No
GO:0008152 metabolic process No
GO:0000270 peptidoglycan metabolic process No
GO:0044036 cell wall macromolecule metabolic process No
GO:1901564 organonitrogen compound metabolic process No
GO:0006027 glycosaminoglycan catabolic process No
GO:0044265 cellular macromolecule catabolic process No
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds No
GO:0016787 hydrolase activity No
GO:0009056 catabolic process No
GO:1901135 carbohydrate derivative metabolic process No
GO:1901565 organonitrogen compound catabolic process No
GO:0044248 cellular catabolic process No
GO:0016798 hydrolase activity, acting on glycosyl bonds No
GO:0009057 macromolecule catabolic process No
GO:0006022 aminoglycan metabolic process No
GO:1901575 organic substance catabolic process No
GO:0006807 nitrogen compound metabolic process No
GO:0030203 glycosaminoglycan metabolic process No
GO:0003824 catalytic activity No
GO:1901136 carbohydrate derivative catabolic process No
GO:0006026 aminoglycan catabolic process No

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Extracellular Signal peptide 0.0866 0.0437 0.9195 0.078 0.0777 0.0334 0.158 0.2398 0.0791 0.0021

SignalP

SignalP signal predicted Location Score
Yes 1 - 24 0.999704

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

CAZyme category E-value Start End
GH25 3.7E-39 26 206

Secondary Metabolism

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Click here for more information

Orthologs

Orthofinder run ID4
Orthogroup8274
Change Orthofinder run
Species Protein ID
Ophiocordyceps kimflemingae Ophio5|975 (this protein)

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|975
MKSFQAVTTVLAAIISTATAAVQGFDVSSAQSSVDFAKAFAEGARFAIIQATQGSGHVDPKFNQFYDDAADAGLI
RGGYHIARPDKAFGGNQAKFFLQNGGGWTNEGRTLPGMVMLTGKHHPETHPCSGLSPKEMEHWIIEFVEVYRAST
GIYPMLYTTTGWWKECTQNTVNLLARSLLVISDYSESIGELPAGWKSYTFWQYSDKSPWADAAYVFNGDISQLNM
TAKFGYPN
Coding >Ophio5|975
ATGAAGTCCTTTCAAGCAGTTACGACTGTACTCGCCGCCATAATCAGCACCGCCACTGCCGCAGTGCAAGGCTTC
GACGTATCGAGTGCCCAGAGCAGCGTCGACTTTGCCAAGGCCTTCGCGGAAGGAGCTCGCTTTGCCATTATCCAG
GCGACGCAGGGGTCTGGCCACGTAGATCCCAAGTTCAACCAATTCTACGATGACGCTGCGGATGCCGGCTTGATT
CGCGGTGGCTATCATATTGCTCGACCGGATAAGGCATTCGGGGGCAACCAAGCCAAGTTCTTCCTTCAGAACGGT
GGCGGCTGGACAAACGAGGGCAGAACCTTGCCTGGGATGGTTATGTTGACAGGAAAACACCATCCCGAGACTCAT
CCCTGCTCTGGACTCTCACCCAAGGAAATGGAGCATTGGATCATTGAGTTTGTCGAGGTTTACCGCGCCTCAACC
GGCATCTACCCTATGCTTTACACTACGACAGGATGGTGGAAGGAGTGCACCCAAAACACGGTCAATCTTCTCGCC
CGATCTCTCCTCGTCATTTCAGATTACTCAGAGTCTATTGGAGAGTTGCCCGCGGGCTGGAAGTCCTATACGTTC
TGGCAATACTCCGACAAATCTCCCTGGGCTGACGCCGCTTACGTCTTTAACGGCGATATATCACAGCTTAATATG
ACTGCGAAATTTGGTTACCCCAAT
Transcript >Ophio5|975
ATGAAGTCCTTTCAAGCAGTTACGACTGTACTCGCCGCCATAATCAGCACCGCCACTGCCGCAGTGCAAGGCTTC
GACGTATCGAGTGCCCAGAGCAGCGTCGACTTTGCCAAGGCCTTCGCGGAAGGAGCTCGCTTTGCCATTATCCAG
GCGACGCAGGGGTCTGGCCACGTAGATCCCAAGTTCAACCAATTCTACGATGACGCTGCGGATGCCGGCTTGATT
CGCGGTGGCTATCATATTGCTCGACCGGATAAGGCATTCGGGGGCAACCAAGCCAAGTTCTTCCTTCAGAACGGT
GGCGGCTGGACAAACGAGGGCAGAACCTTGCCTGGGATGGTTATGTTGACAGGAAAACACCATCCCGAGACTCAT
CCCTGCTCTGGACTCTCACCCAAGGAAATGGAGCATTGGATCATTGAGTTTGTCGAGGTTTACCGCGCCTCAACC
GGCATCTACCCTATGCTTTACACTACGACAGGATGGTGGAAGGAGTGCACCCAAAACACGGTCAATCTTCTCGCC
CGATCTCTCCTCGTCATTTCAGATTACTCAGAGTCTATTGGAGAGTTGCCCGCGGGCTGGAAGTCCTATACGTTC
TGGCAATACTCCGACAAATCTCCCTGGGCTGACGCCGCTTACGTCTTTAACGGCGATATATCACAGCTTAATATG
ACTGCGAAATTTGGTTACCCCAATTGA
Gene >Ophio5|975
ATGAAGTCCTTTCAAGCAGTTACGACTGTACTCGCCGCCATAATCAGCACCGCCACTGCCGCAGTGCAAGGCTTC
GACGTATCGAGTGCCCAGAGCAGCGTCGACTTTGCCAAGGCCTTCGCGGAAGGAGCTCGCTTTGCCATTATCCAG
GTAAGCGCGGCCGCGAACTCGAGGTGTATCGCACAATCAGCTGACGAAGATGAACAAGGCGACGCAGGGGTCTGG
CCACGTAGATCCCAAGTTCAACCAATTCTACGATGACGCTGCGGATGCCGGCTTGATTCGCGGTGGCTATCATAT
TGCTCGACCGGATAAGGCATTCGGGGGCAACCAAGCCAAGTTCTTCCTTCAGAACGGTGGCGGCTGGACAAACGA
GGGCAGAACCTTGCCTGGGATGGTTATGTTGACAGGAAAACACCATCCCGAGACTCATCCCTGCTCTGGACTCTC
ACCCAAGGAAATGGAGCATTGGATCATTGAGTTTGTCGAGGTTTACCGCGCCTCAACCGGCATCTACCCTATGCT
TTACACTACGACAGGATGGTGGAAGGAGTGCACCCAAAACACGGTCAATCTTCTCGCCCGATCTCTCCTCGTCAT
TTCAGATTACTCAGAGTCTATTGGAGAGTTGCCCGCGGGCTGGAAGTCCTATACGTTCTGGCAATACTCCGACAA
ATCTCCCTGGGCTGACGCCGCTTACGTCTTTAACGGCGATATATCACAGCTTAATATGACTGCGAAATTTGGTTA
CCCCAATTGA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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