Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|938
Gene name
Locationscaffold_1280:1728..2103
Strand-
Gene length (bp)375
Transcript length (bp)375
Coding sequence length (bp)372
Protein length (aa) 124

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00732 GMC_oxred_N GMC oxidoreductase 3.2E-07 42 122
PF00890 FAD_binding_2 FAD binding domain 3.1E-07 43 74
PF07992 Pyr_redox_2 Pyridine nucleotide-disulphide oxidoreductase 1.7E-06 42 99
PF13450 NAD_binding_8 NAD(P)-binding Rossmann-like domain 6.7E-05 46 73

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q12062|AFLK_ASPPA Versicolorin B synthase OS=Aspergillus parasiticus GN=vbs PE=1 SV=1 41 123 4.0E-16
sp|Q3L245|PDH1_LEUMG Pyranose dehydrogenase 1 OS=Leucoagaricus meleagris GN=pdh1 PE=1 SV=1 42 121 7.0E-09
sp|V5NDL4|PDH1_AGACM Pyranose dehydrogenase OS=Agaricus campestris GN=pdh1 PE=1 SV=1 23 121 3.0E-08
sp|Q1MJU4|BETA_RHIL3 Oxygen-dependent choline dehydrogenase OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=betA PE=3 SV=1 43 120 6.0E-08
sp|Q3L1D1|PDH1_AGABI Pyranose dehydrogenase OS=Agaricus bisporus GN=pdh1 PE=1 SV=1 38 121 8.0E-08
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Swissprot ID Swissprot Description Start End E-value
sp|Q12062|AFLK_ASPPA Versicolorin B synthase OS=Aspergillus parasiticus GN=vbs PE=1 SV=1 41 123 4.0E-16
sp|Q3L245|PDH1_LEUMG Pyranose dehydrogenase 1 OS=Leucoagaricus meleagris GN=pdh1 PE=1 SV=1 42 121 7.0E-09
sp|V5NDL4|PDH1_AGACM Pyranose dehydrogenase OS=Agaricus campestris GN=pdh1 PE=1 SV=1 23 121 3.0E-08
sp|Q1MJU4|BETA_RHIL3 Oxygen-dependent choline dehydrogenase OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=betA PE=3 SV=1 43 120 6.0E-08
sp|Q3L1D1|PDH1_AGABI Pyranose dehydrogenase OS=Agaricus bisporus GN=pdh1 PE=1 SV=1 38 121 8.0E-08
sp|Q6LGH5|BETA_PHOPR Oxygen-dependent choline dehydrogenase OS=Photobacterium profundum GN=betA PE=3 SV=1 39 121 9.0E-08
sp|B5ZUG2|BETA_RHILW Oxygen-dependent choline dehydrogenase OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=betA PE=3 SV=1 43 120 4.0E-07
sp|Q2KB43|BETA_RHIEC Oxygen-dependent choline dehydrogenase OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=betA PE=3 SV=1 43 120 4.0E-07
sp|B3PTE0|BETA_RHIE6 Oxygen-dependent choline dehydrogenase OS=Rhizobium etli (strain CIAT 652) GN=betA PE=3 SV=1 43 120 4.0E-07
sp|Q8UH55|BETA_AGRFC Oxygen-dependent choline dehydrogenase OS=Agrobacterium fabrum (strain C58 / ATCC 33970) GN=betA PE=3 SV=2 43 120 5.0E-07
sp|Q6FDF9|BETA_ACIAD Oxygen-dependent choline dehydrogenase OS=Acinetobacter baylyi (strain ATCC 33305 / BD413 / ADP1) GN=betA PE=3 SV=1 41 120 8.0E-07
sp|Q0R4L2|PDH3_LEUMG Pyranose dehydrogenase 3 OS=Leucoagaricus meleagris GN=pdh3 PE=2 SV=1 39 121 2.0E-06
sp|B9JBA2|BETA_AGRRK Oxygen-dependent choline dehydrogenase OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=betA PE=3 SV=1 43 120 3.0E-06
sp|A7N2P9|BETA_VIBCB Oxygen-dependent choline dehydrogenase OS=Vibrio campbellii (strain ATCC BAA-1116 / BB120) GN=betA PE=3 SV=1 42 120 3.0E-06
sp|P18173|DHGL_DROME Glucose dehydrogenase [FAD, quinone] OS=Drosophila melanogaster GN=Gld PE=3 SV=3 39 124 4.0E-06
sp|P18172|DHGL_DROPS Glucose dehydrogenase [FAD, quinone] OS=Drosophila pseudoobscura pseudoobscura GN=Gld PE=3 SV=4 39 124 4.0E-06
sp|Q3L243|PDH2_LEUMG Pyranose dehydrogenase 2 OS=Leucoagaricus meleagris GN=pdh2 PE=2 SV=1 42 121 5.0E-06
sp|V5NC32|PDH1_AGAXA Pyranose dehydrogenase OS=Agaricus xanthodermus GN=pdh1 PE=1 SV=1 39 121 9.0E-06
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GO

GO Term Description Terminal node
GO:0016491 oxidoreductase activity Yes
GO:0016614 oxidoreductase activity, acting on CH-OH group of donors Yes
GO:0050660 flavin adenine dinucleotide binding Yes
GO:0036094 small molecule binding No
GO:0097159 organic cyclic compound binding No
GO:0005488 binding No
GO:1901265 nucleoside phosphate binding No
GO:0000166 nucleotide binding No
GO:0003824 catalytic activity No
GO:0043167 ion binding No
GO:0003674 molecular_function No
GO:0043168 anion binding No
GO:1901363 heterocyclic compound binding No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
Yes 1 - 25 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
SC16a Pure fungal culture 0.0 0.0 0.0
CcL In ants, during behavior modification 0.0 0.0 0.0
CcD In ants, recently dead 0.0 0.0 0.0

Differential expression

Label1 Label2 Q-value Significant difference
SC16a CcL 1.0 no
SC16a CcD 1.0 no
CcL CcD 1.0 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|938
MRVNSVQDILPSAVLSLLATVVSGVTTPLPDSALGQAGDASFDYVVVGGGTAGLVVAARLAEAGKEVAVVEAGGF
YQVDNGIFSQVPSYAIVGAGSSPKAIVPAVDWGFLTTPQAGMNNRSTFP
Coding >Ophio5|938
ATGCGTGTCAACTCGGTCCAGGACATTCTCCCGTCTGCGGTACTGAGTCTACTGGCCACGGTCGTATCCGGTGTC
ACGACGCCGTTACCGGATTCCGCCTTGGGCCAAGCCGGAGATGCAAGCTTCGACTATGTCGTCGTCGGAGGCGGA
ACGGCAGGATTGGTCGTCGCTGCGAGACTGGCCGAGGCAGGGAAAGAGGTTGCCGTCGTCGAGGCTGGTGGCTTC
TACCAAGTAGACAATGGCATCTTTAGTCAAGTGCCGTCGTATGCCATCGTCGGTGCAGGCTCCAGTCCCAAGGCC
ATAGTTCCAGCCGTCGATTGGGGGTTTTTGACTACGCCCCAGGCTGGCATGAACAATAGGTCAACTTTCCCC
Transcript >Ophio5|938
ATGCGTGTCAACTCGGTCCAGGACATTCTCCCGTCTGCGGTACTGAGTCTACTGGCCACGGTCGTATCCGGTGTC
ACGACGCCGTTACCGGATTCCGCCTTGGGCCAAGCCGGAGATGCAAGCTTCGACTATGTCGTCGTCGGAGGCGGA
ACGGCAGGATTGGTCGTCGCTGCGAGACTGGCCGAGGCAGGGAAAGAGGTTGCCGTCGTCGAGGCTGGTGGCTTC
TACCAAGTAGACAATGGCATCTTTAGTCAAGTGCCGTCGTATGCCATCGTCGGTGCAGGCTCCAGTCCCAAGGCC
ATAGTTCCAGCCGTCGATTGGGGGTTTTTGACTACGCCCCAGGCTGGCATGAACAATAGGTCAACTTTCCCCTAA
Gene >Ophio5|938
ATGCGTGTCAACTCGGTCCAGGACATTCTCCCGTCTGCGGTACTGAGTCTACTGGCCACGGTCGTATCCGGTGTC
ACGACGCCGTTACCGGATTCCGCCTTGGGCCAAGCCGGAGATGCAAGCTTCGACTATGTCGTCGTCGGAGGCGGA
ACGGCAGGATTGGTCGTCGCTGCGAGACTGGCCGAGGCAGGGAAAGAGGTTGCCGTCGTCGAGGCTGGTGGCTTC
TACCAAGTAGACAATGGCATCTTTAGTCAAGTGCCGTCGTATGCCATCGTCGGTGCAGGCTCCAGTCCCAAGGCC
ATAGTTCCAGCCGTCGATTGGGGGTTTTTGACTACGCCCCAGGCTGGCATGAACAATAGGTCAACTTTCCCCTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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