Protein ID | Ophio5|938 |
Gene name | |
Location | scaffold_1280:1728..2103 |
Strand | - |
Gene length (bp) | 375 |
Transcript length (bp) | 375 |
Coding sequence length (bp) | 372 |
Protein length (aa) | 124 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF00732 | GMC_oxred_N | GMC oxidoreductase | 3.2E-07 | 42 | 122 |
PF00890 | FAD_binding_2 | FAD binding domain | 3.1E-07 | 43 | 74 |
PF07992 | Pyr_redox_2 | Pyridine nucleotide-disulphide oxidoreductase | 1.7E-06 | 42 | 99 |
PF13450 | NAD_binding_8 | NAD(P)-binding Rossmann-like domain | 6.7E-05 | 46 | 73 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|Q12062|AFLK_ASPPA | Versicolorin B synthase OS=Aspergillus parasiticus GN=vbs PE=1 SV=1 | 41 | 123 | 4.0E-16 |
sp|Q3L245|PDH1_LEUMG | Pyranose dehydrogenase 1 OS=Leucoagaricus meleagris GN=pdh1 PE=1 SV=1 | 42 | 121 | 7.0E-09 |
sp|V5NDL4|PDH1_AGACM | Pyranose dehydrogenase OS=Agaricus campestris GN=pdh1 PE=1 SV=1 | 23 | 121 | 3.0E-08 |
sp|Q1MJU4|BETA_RHIL3 | Oxygen-dependent choline dehydrogenase OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=betA PE=3 SV=1 | 43 | 120 | 6.0E-08 |
sp|Q3L1D1|PDH1_AGABI | Pyranose dehydrogenase OS=Agaricus bisporus GN=pdh1 PE=1 SV=1 | 38 | 121 | 8.0E-08 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|Q12062|AFLK_ASPPA | Versicolorin B synthase OS=Aspergillus parasiticus GN=vbs PE=1 SV=1 | 41 | 123 | 4.0E-16 |
sp|Q3L245|PDH1_LEUMG | Pyranose dehydrogenase 1 OS=Leucoagaricus meleagris GN=pdh1 PE=1 SV=1 | 42 | 121 | 7.0E-09 |
sp|V5NDL4|PDH1_AGACM | Pyranose dehydrogenase OS=Agaricus campestris GN=pdh1 PE=1 SV=1 | 23 | 121 | 3.0E-08 |
sp|Q1MJU4|BETA_RHIL3 | Oxygen-dependent choline dehydrogenase OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=betA PE=3 SV=1 | 43 | 120 | 6.0E-08 |
sp|Q3L1D1|PDH1_AGABI | Pyranose dehydrogenase OS=Agaricus bisporus GN=pdh1 PE=1 SV=1 | 38 | 121 | 8.0E-08 |
sp|Q6LGH5|BETA_PHOPR | Oxygen-dependent choline dehydrogenase OS=Photobacterium profundum GN=betA PE=3 SV=1 | 39 | 121 | 9.0E-08 |
sp|B5ZUG2|BETA_RHILW | Oxygen-dependent choline dehydrogenase OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=betA PE=3 SV=1 | 43 | 120 | 4.0E-07 |
sp|Q2KB43|BETA_RHIEC | Oxygen-dependent choline dehydrogenase OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=betA PE=3 SV=1 | 43 | 120 | 4.0E-07 |
sp|B3PTE0|BETA_RHIE6 | Oxygen-dependent choline dehydrogenase OS=Rhizobium etli (strain CIAT 652) GN=betA PE=3 SV=1 | 43 | 120 | 4.0E-07 |
sp|Q8UH55|BETA_AGRFC | Oxygen-dependent choline dehydrogenase OS=Agrobacterium fabrum (strain C58 / ATCC 33970) GN=betA PE=3 SV=2 | 43 | 120 | 5.0E-07 |
sp|Q6FDF9|BETA_ACIAD | Oxygen-dependent choline dehydrogenase OS=Acinetobacter baylyi (strain ATCC 33305 / BD413 / ADP1) GN=betA PE=3 SV=1 | 41 | 120 | 8.0E-07 |
sp|Q0R4L2|PDH3_LEUMG | Pyranose dehydrogenase 3 OS=Leucoagaricus meleagris GN=pdh3 PE=2 SV=1 | 39 | 121 | 2.0E-06 |
sp|B9JBA2|BETA_AGRRK | Oxygen-dependent choline dehydrogenase OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=betA PE=3 SV=1 | 43 | 120 | 3.0E-06 |
sp|A7N2P9|BETA_VIBCB | Oxygen-dependent choline dehydrogenase OS=Vibrio campbellii (strain ATCC BAA-1116 / BB120) GN=betA PE=3 SV=1 | 42 | 120 | 3.0E-06 |
sp|P18173|DHGL_DROME | Glucose dehydrogenase [FAD, quinone] OS=Drosophila melanogaster GN=Gld PE=3 SV=3 | 39 | 124 | 4.0E-06 |
sp|P18172|DHGL_DROPS | Glucose dehydrogenase [FAD, quinone] OS=Drosophila pseudoobscura pseudoobscura GN=Gld PE=3 SV=4 | 39 | 124 | 4.0E-06 |
sp|Q3L243|PDH2_LEUMG | Pyranose dehydrogenase 2 OS=Leucoagaricus meleagris GN=pdh2 PE=2 SV=1 | 42 | 121 | 5.0E-06 |
sp|V5NC32|PDH1_AGAXA | Pyranose dehydrogenase OS=Agaricus xanthodermus GN=pdh1 PE=1 SV=1 | 39 | 121 | 9.0E-06 |
GO Term | Description | Terminal node |
---|---|---|
GO:0016491 | oxidoreductase activity | Yes |
GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors | Yes |
GO:0050660 | flavin adenine dinucleotide binding | Yes |
GO:0036094 | small molecule binding | No |
GO:0097159 | organic cyclic compound binding | No |
GO:0005488 | binding | No |
GO:1901265 | nucleoside phosphate binding | No |
GO:0000166 | nucleotide binding | No |
GO:0003824 | catalytic activity | No |
GO:0043167 | ion binding | No |
GO:0003674 | molecular_function | No |
GO:0043168 | anion binding | No |
GO:1901363 | heterocyclic compound binding | No |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
Yes | 1 - 25 | 0.45 |
Expression values
Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
---|---|---|---|---|
SC16a | Pure fungal culture | 0.0 | 0.0 | 0.0 |
CcL | In ants, during behavior modification | 0.0 | 0.0 | 0.0 |
CcD | In ants, recently dead | 0.0 | 0.0 | 0.0 |
Differential expression
Label1 | Label2 | Q-value | Significant difference |
---|---|---|---|
SC16a | CcL | 1.0 | no |
SC16a | CcD | 1.0 | no |
CcL | CcD | 1.0 | no |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Ophio5|938 MRVNSVQDILPSAVLSLLATVVSGVTTPLPDSALGQAGDASFDYVVVGGGTAGLVVAARLAEAGKEVAVVEAGGF YQVDNGIFSQVPSYAIVGAGSSPKAIVPAVDWGFLTTPQAGMNNRSTFP |
Coding | >Ophio5|938 ATGCGTGTCAACTCGGTCCAGGACATTCTCCCGTCTGCGGTACTGAGTCTACTGGCCACGGTCGTATCCGGTGTC ACGACGCCGTTACCGGATTCCGCCTTGGGCCAAGCCGGAGATGCAAGCTTCGACTATGTCGTCGTCGGAGGCGGA ACGGCAGGATTGGTCGTCGCTGCGAGACTGGCCGAGGCAGGGAAAGAGGTTGCCGTCGTCGAGGCTGGTGGCTTC TACCAAGTAGACAATGGCATCTTTAGTCAAGTGCCGTCGTATGCCATCGTCGGTGCAGGCTCCAGTCCCAAGGCC ATAGTTCCAGCCGTCGATTGGGGGTTTTTGACTACGCCCCAGGCTGGCATGAACAATAGGTCAACTTTCCCC |
Transcript | >Ophio5|938 ATGCGTGTCAACTCGGTCCAGGACATTCTCCCGTCTGCGGTACTGAGTCTACTGGCCACGGTCGTATCCGGTGTC ACGACGCCGTTACCGGATTCCGCCTTGGGCCAAGCCGGAGATGCAAGCTTCGACTATGTCGTCGTCGGAGGCGGA ACGGCAGGATTGGTCGTCGCTGCGAGACTGGCCGAGGCAGGGAAAGAGGTTGCCGTCGTCGAGGCTGGTGGCTTC TACCAAGTAGACAATGGCATCTTTAGTCAAGTGCCGTCGTATGCCATCGTCGGTGCAGGCTCCAGTCCCAAGGCC ATAGTTCCAGCCGTCGATTGGGGGTTTTTGACTACGCCCCAGGCTGGCATGAACAATAGGTCAACTTTCCCCTAA |
Gene | >Ophio5|938 ATGCGTGTCAACTCGGTCCAGGACATTCTCCCGTCTGCGGTACTGAGTCTACTGGCCACGGTCGTATCCGGTGTC ACGACGCCGTTACCGGATTCCGCCTTGGGCCAAGCCGGAGATGCAAGCTTCGACTATGTCGTCGTCGGAGGCGGA ACGGCAGGATTGGTCGTCGCTGCGAGACTGGCCGAGGCAGGGAAAGAGGTTGCCGTCGTCGAGGCTGGTGGCTTC TACCAAGTAGACAATGGCATCTTTAGTCAAGTGCCGTCGTATGCCATCGTCGGTGCAGGCTCCAGTCCCAAGGCC ATAGTTCCAGCCGTCGATTGGGGGTTTTTGACTACGCCCCAGGCTGGCATGAACAATAGGTCAACTTTCCCCTAA |