Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|938
Gene name
Locationscaffold_1280:1728..2103
Strand-
Gene length (bp)375
Transcript length (bp)375
Coding sequence length (bp)372
Protein length (aa) 124

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00732 GMC_oxred_N GMC oxidoreductase 3.2E-07 42 122
PF00890 FAD_binding_2 FAD binding domain 3.1E-07 43 74
PF07992 Pyr_redox_2 Pyridine nucleotide-disulphide oxidoreductase 1.7E-06 42 99
PF13450 NAD_binding_8 NAD(P)-binding Rossmann-like domain 6.7E-05 46 73

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q12062|AFLK_ASPPA Versicolorin B synthase OS=Aspergillus parasiticus GN=vbs PE=1 SV=1 41 123 4.0E-16
sp|Q3L245|PDH1_LEUMG Pyranose dehydrogenase 1 OS=Leucoagaricus meleagris GN=pdh1 PE=1 SV=1 42 121 7.0E-09
sp|V5NDL4|PDH1_AGACM Pyranose dehydrogenase OS=Agaricus campestris GN=pdh1 PE=1 SV=1 23 121 3.0E-08
sp|Q1MJU4|BETA_RHIL3 Oxygen-dependent choline dehydrogenase OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=betA PE=3 SV=1 43 120 6.0E-08
sp|Q3L1D1|PDH1_AGABI Pyranose dehydrogenase OS=Agaricus bisporus GN=pdh1 PE=1 SV=1 38 121 8.0E-08
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Swissprot ID Swissprot Description Start End E-value
sp|Q12062|AFLK_ASPPA Versicolorin B synthase OS=Aspergillus parasiticus GN=vbs PE=1 SV=1 41 123 4.0E-16
sp|Q3L245|PDH1_LEUMG Pyranose dehydrogenase 1 OS=Leucoagaricus meleagris GN=pdh1 PE=1 SV=1 42 121 7.0E-09
sp|V5NDL4|PDH1_AGACM Pyranose dehydrogenase OS=Agaricus campestris GN=pdh1 PE=1 SV=1 23 121 3.0E-08
sp|Q1MJU4|BETA_RHIL3 Oxygen-dependent choline dehydrogenase OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=betA PE=3 SV=1 43 120 6.0E-08
sp|Q3L1D1|PDH1_AGABI Pyranose dehydrogenase OS=Agaricus bisporus GN=pdh1 PE=1 SV=1 38 121 8.0E-08
sp|Q6LGH5|BETA_PHOPR Oxygen-dependent choline dehydrogenase OS=Photobacterium profundum GN=betA PE=3 SV=1 39 121 9.0E-08
sp|B5ZUG2|BETA_RHILW Oxygen-dependent choline dehydrogenase OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=betA PE=3 SV=1 43 120 4.0E-07
sp|Q2KB43|BETA_RHIEC Oxygen-dependent choline dehydrogenase OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=betA PE=3 SV=1 43 120 4.0E-07
sp|B3PTE0|BETA_RHIE6 Oxygen-dependent choline dehydrogenase OS=Rhizobium etli (strain CIAT 652) GN=betA PE=3 SV=1 43 120 4.0E-07
sp|Q8UH55|BETA_AGRFC Oxygen-dependent choline dehydrogenase OS=Agrobacterium fabrum (strain C58 / ATCC 33970) GN=betA PE=3 SV=2 43 120 5.0E-07
sp|Q6FDF9|BETA_ACIAD Oxygen-dependent choline dehydrogenase OS=Acinetobacter baylyi (strain ATCC 33305 / BD413 / ADP1) GN=betA PE=3 SV=1 41 120 8.0E-07
sp|Q0R4L2|PDH3_LEUMG Pyranose dehydrogenase 3 OS=Leucoagaricus meleagris GN=pdh3 PE=2 SV=1 39 121 2.0E-06
sp|B9JBA2|BETA_AGRRK Oxygen-dependent choline dehydrogenase OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=betA PE=3 SV=1 43 120 3.0E-06
sp|A7N2P9|BETA_VIBCB Oxygen-dependent choline dehydrogenase OS=Vibrio campbellii (strain ATCC BAA-1116 / BB120) GN=betA PE=3 SV=1 42 120 3.0E-06
sp|P18173|DHGL_DROME Glucose dehydrogenase [FAD, quinone] OS=Drosophila melanogaster GN=Gld PE=3 SV=3 39 124 4.0E-06
sp|P18172|DHGL_DROPS Glucose dehydrogenase [FAD, quinone] OS=Drosophila pseudoobscura pseudoobscura GN=Gld PE=3 SV=4 39 124 4.0E-06
sp|Q3L243|PDH2_LEUMG Pyranose dehydrogenase 2 OS=Leucoagaricus meleagris GN=pdh2 PE=2 SV=1 42 121 5.0E-06
sp|V5NC32|PDH1_AGAXA Pyranose dehydrogenase OS=Agaricus xanthodermus GN=pdh1 PE=1 SV=1 39 121 9.0E-06
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GO

GO Term Description Terminal node
GO:0016491 oxidoreductase activity Yes
GO:0016614 oxidoreductase activity, acting on CH-OH group of donors Yes
GO:0050660 flavin adenine dinucleotide binding Yes
GO:0036094 small molecule binding No
GO:0097159 organic cyclic compound binding No
GO:0005488 binding No
GO:1901265 nucleoside phosphate binding No
GO:0000166 nucleotide binding No
GO:0003824 catalytic activity No
GO:0043167 ion binding No
GO:0003674 molecular_function No
GO:0043168 anion binding No
GO:1901363 heterocyclic compound binding No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
Yes 1 - 25 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Click here for more information

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|938
MRVNSVQDILPSAVLSLLATVVSGVTTPLPDSALGQAGDASFDYVVVGGGTAGLVVAARLAEAGKEVAVVEAGGF
YQVDNGIFSQVPSYAIVGAGSSPKAIVPAVDWGFLTTPQAGMNNRSTFP
Coding >Ophio5|938
ATGCGTGTCAACTCGGTCCAGGACATTCTCCCGTCTGCGGTACTGAGTCTACTGGCCACGGTCGTATCCGGTGTC
ACGACGCCGTTACCGGATTCCGCCTTGGGCCAAGCCGGAGATGCAAGCTTCGACTATGTCGTCGTCGGAGGCGGA
ACGGCAGGATTGGTCGTCGCTGCGAGACTGGCCGAGGCAGGGAAAGAGGTTGCCGTCGTCGAGGCTGGTGGCTTC
TACCAAGTAGACAATGGCATCTTTAGTCAAGTGCCGTCGTATGCCATCGTCGGTGCAGGCTCCAGTCCCAAGGCC
ATAGTTCCAGCCGTCGATTGGGGGTTTTTGACTACGCCCCAGGCTGGCATGAACAATAGGTCAACTTTCCCC
Transcript >Ophio5|938
ATGCGTGTCAACTCGGTCCAGGACATTCTCCCGTCTGCGGTACTGAGTCTACTGGCCACGGTCGTATCCGGTGTC
ACGACGCCGTTACCGGATTCCGCCTTGGGCCAAGCCGGAGATGCAAGCTTCGACTATGTCGTCGTCGGAGGCGGA
ACGGCAGGATTGGTCGTCGCTGCGAGACTGGCCGAGGCAGGGAAAGAGGTTGCCGTCGTCGAGGCTGGTGGCTTC
TACCAAGTAGACAATGGCATCTTTAGTCAAGTGCCGTCGTATGCCATCGTCGGTGCAGGCTCCAGTCCCAAGGCC
ATAGTTCCAGCCGTCGATTGGGGGTTTTTGACTACGCCCCAGGCTGGCATGAACAATAGGTCAACTTTCCCCTAA
Gene >Ophio5|938
ATGCGTGTCAACTCGGTCCAGGACATTCTCCCGTCTGCGGTACTGAGTCTACTGGCCACGGTCGTATCCGGTGTC
ACGACGCCGTTACCGGATTCCGCCTTGGGCCAAGCCGGAGATGCAAGCTTCGACTATGTCGTCGTCGGAGGCGGA
ACGGCAGGATTGGTCGTCGCTGCGAGACTGGCCGAGGCAGGGAAAGAGGTTGCCGTCGTCGAGGCTGGTGGCTTC
TACCAAGTAGACAATGGCATCTTTAGTCAAGTGCCGTCGTATGCCATCGTCGGTGCAGGCTCCAGTCCCAAGGCC
ATAGTTCCAGCCGTCGATTGGGGGTTTTTGACTACGCCCCAGGCTGGCATGAACAATAGGTCAACTTTCCCCTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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