© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|917 |
| Gene name | |
| Location | scaffold_1277:394..1533 |
| Strand | + |
| Gene length (bp) | 1139 |
| Transcript length (bp) | 876 |
| Coding sequence length (bp) | 873 |
| Protein length (aa) | 291 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF17172 | GST_N_4 | Glutathione S-transferase N-terminal domain | 3.7E-14 | 59 | 157 |
| PF17171 | GST_C_6 | Glutathione S-transferase, C-terminal domain | 6.1E-12 | 201 | 275 |
| PF10568 | Tom37 | Outer mitochondrial membrane transport complex protein | 8.4E-11 | 61 | 180 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0001401 | SAM complex | Yes |
| GO:0098796 | membrane protein complex | No |
| GO:0032991 | protein-containing complex | No |
| GO:0005575 | cellular_component | No |
| GO:0098798 | mitochondrial protein-containing complex | No |
| GO:0005742 | mitochondrial outer membrane translocase complex | No |
| GO:0098799 | outer mitochondrial membrane protein complex | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 17 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 18.07 | 6.80 | 29.35 |
| CcL | In ants, during behavior modification | 19.33 | 7.48 | 31.18 |
| CcD | In ants, recently dead | 25.88 | 10.64 | 41.11 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.866502 | no |
| SC16a | CcD | 0.260545 | no |
| CcL | CcD | 0.368480 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|917 MADRSGLFAVPAPVRALFRLVPLRVYESEPMPCRAPSEMRSRPRLHVYGVDGQGLSCDPACLMWQTFLRIAHVDV DLVTSSPLASPDGSLPFLLPSSTEPKADMPLTGSAMARYVRGHASSGSGSEQPAADLEVYLALLTQHIRPAWNYA LFSHPANESLLAELYLSSRSAIPLSLRLPSLRVAMDIKPAKQPPQDVVSDARRAFRALDTLLACAPDSHNNPWFF GAQRPGLFDAHVFSYTYPLLKNNPPLPWADDFSLRDCLVGCPRLSAHCDNLYASCWPPGDADDRAV |
| Coding | >Ophio5|917 ATGGCCGATCGGAGCGGCCTCTTCGCCGTGCCGGCTCCCGTCCGCGCCCTCTTCCGTCTCGTGCCCCTGCGCGTC TACGAGTCGGAGCCGATGCCATGTCGTGCCCCGTCTGAGATGCGTTCGCGGCCCAGGCTGCATGTCTACGGCGTT GATGGTCAAGGGCTGAGCTGTGATCCGGCGTGCCTCATGTGGCAGACCTTTCTACGCATCGCCCATGTCGACGTC GACCTCGTCACTTCTTCCCCCCTCGCCTCCCCGGACGGCTCTCTTCCTTTCCTCCTCCCCTCCAGCACAGAGCCC AAGGCCGACATGCCGCTGACGGGTTCCGCCATGGCCCGTTACGTTCGCGGTCATGCCTCCTCCGGCTCCGGTTCG GAGCAGCCGGCCGCGGACCTCGAGGTCTATCTGGCCCTCTTGACGCAACACATTCGTCCAGCATGGAATTATGCC TTATTCTCTCATCCCGCCAACGAGTCCCTCCTCGCTGAGCTTTACCTCTCTTCCCGCTCGGCCATCCCCCTCTCC CTACGGCTACCTTCCCTCCGCGTCGCCATGGATATCAAGCCGGCCAAGCAGCCGCCCCAAGATGTCGTCTCCGAC GCACGCAGAGCCTTTCGCGCTCTTGATACCCTTCTCGCCTGCGCACCGGACAGTCATAATAACCCTTGGTTCTTC GGCGCCCAGCGCCCGGGCCTCTTCGACGCTCACGTCTTCTCCTACACCTATCCCCTACTCAAGAATAATCCTCCC CTTCCCTGGGCCGACGACTTTTCTCTGAGAGATTGCCTCGTCGGATGCCCTCGTCTATCTGCCCACTGCGACAAC TTGTATGCCTCTTGCTGGCCCCCTGGCGACGCAGACGACCGTGCCGTA |
| Transcript | >Ophio5|917 ATGGCCGATCGGAGCGGCCTCTTCGCCGTGCCGGCTCCCGTCCGCGCCCTCTTCCGTCTCGTGCCCCTGCGCGTC TACGAGTCGGAGCCGATGCCATGTCGTGCCCCGTCTGAGATGCGTTCGCGGCCCAGGCTGCATGTCTACGGCGTT GATGGTCAAGGGCTGAGCTGTGATCCGGCGTGCCTCATGTGGCAGACCTTTCTACGCATCGCCCATGTCGACGTC GACCTCGTCACTTCTTCCCCCCTCGCCTCCCCGGACGGCTCTCTTCCTTTCCTCCTCCCCTCCAGCACAGAGCCC AAGGCCGACATGCCGCTGACGGGTTCCGCCATGGCCCGTTACGTTCGCGGTCATGCCTCCTCCGGCTCCGGTTCG GAGCAGCCGGCCGCGGACCTCGAGGTCTATCTGGCCCTCTTGACGCAACACATTCGTCCAGCATGGAATTATGCC TTATTCTCTCATCCCGCCAACGAGTCCCTCCTCGCTGAGCTTTACCTCTCTTCCCGCTCGGCCATCCCCCTCTCC CTACGGCTACCTTCCCTCCGCGTCGCCATGGATATCAAGCCGGCCAAGCAGCCGCCCCAAGATGTCGTCTCCGAC GCACGCAGAGCCTTTCGCGCTCTTGATACCCTTCTCGCCTGCGCACCGGACAGTCATAATAACCCTTGGTTCTTC GGCGCCCAGCGCCCGGGCCTCTTCGACGCTCACGTCTTCTCCTACACCTATCCCCTACTCAAGAATAATCCTCCC CTTCCCTGGGCCGACGACTTTTCTCTGAGAGATTGCCTCGTCGGATGCCCTCGTCTATCTGCCCACTGCGACAAC TTGTATGCCTCTTGCTGGCCCCCTGGCGACGCAGACGACCGTGCCGTATGA |
| Gene | >Ophio5|917 ATGGCCGATCGGAGCGGCCTCTTCGCCGTGCCGGCTCCCGTCCGCGCCCTCTTCCGTCTCGTGCCCCTGCGCGTC TACGAGTCGGAGCCGATGCCATGTCGTGCCCCGTCTGAGATGCGTTCGCGGCCCAGGCTGCATGTCTACGGCGTT GATGGTCAAGGGCTGAGCTGTGATCCGGCGTGCCTCATGTGGCAGGTATGACGATTTTTTTTGGGGGGTTTTTTT TTTCAATAAAGATTTTGGAAAAAAAAATTTACGATATTTTTTTTTTTGAGGGGGGGCTTGCGCCGAAGAGGTTCT CCTTCTTGACGGGAACGGGTTGGCTGGGTGTGGGAGAGGATGTTGATCACCAAATGATGCTTCCCTGACTTACAC ACTGGTTAGACCTTTCTACGCATCGCCCATGTCGACGTCGACCTCGTCACTTCTTCCCCCCTCGCCTCCCCGGAC GGCTCTCTTCCTTTCCTCCTCCCCTCCAGCACAGAGCCCAAGGCCGACATGCCGCTGACGGGTTCCGCCATGGCC CGTTACGTTCGCGGTCATGCCTCCTCCGGCTCCGGTTCGGAGCAGCCGGCCGCGGACCTCGAGGTCTATCTGGCC CTCTTGACGCAACACATTCGTCCAGCATGGGTTCGTCATCTGTCTCTTCCTTTCTCCTCTTCTTTCCCCCCCCTC TTGGGCTGACGAGTAGCATGCTTCTTTAGAATTATGCCTTATTCTCTCATCCCGCCAACGAGTCCCTCCTCGCTG AGCTTTACCTCTCTTCCCGCTCGGCCATCCCCCTCTCCCTACGGCTACCTTCCCTCCGCGTCGCCATGGATATCA AGCCGGCCAAGCAGCCGCCCCAAGATGTCGTCTCCGACGCACGCAGAGCCTTTCGCGCTCTTGATACCCTTCTCG CCTGCGCACCGGACAGTCATAATAACCCTTGGTTCTTCGGCGCCCAGCGCCCGGGCCTCTTCGACGCTCACGTCT TCTCCTACACCTATCCCCTACTCAAGAATAATCCTCCCCTTCCCTGGGCCGACGACTTTTCTCTGAGAGATTGCC TCGTCGGATGCCCTCGTCTATCTGCCCACTGCGACAACTTGTATGCCTCTTGCTGGCCCCCTGGCGACGCAGACG ACCGTGCCGTATGA |