Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|911
Gene name
Locationscaffold_127:33833..34693
Strand+
Gene length (bp)860
Transcript length (bp)804
Coding sequence length (bp)801
Protein length (aa) 267

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF14523 Syntaxin_2 Syntaxin-like protein 1.5E-23 33 130
PF05739 SNARE SNARE domain 6.0E-14 212 261

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|P93654|SYP22_ARATH Syntaxin-22 OS=Arabidopsis thaliana GN=SYP22 PE=1 SV=1 1 254 2.0E-26
sp|Q5RBW6|STX12_PONAB Syntaxin-12 OS=Pongo abelii GN=STX12 PE=2 SV=1 23 254 9.0E-24
sp|O94651|PEP12_SCHPO Syntaxin pep12 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pep12 PE=1 SV=2 62 267 1.0E-23
sp|Q39233|SYP21_ARATH Syntaxin-21 OS=Arabidopsis thaliana GN=SYP21 PE=1 SV=1 1 253 1.0E-23
sp|Q86Y82|STX12_HUMAN Syntaxin-12 OS=Homo sapiens GN=STX12 PE=1 SV=1 23 252 1.0E-22
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Swissprot ID Swissprot Description Start End E-value
sp|P93654|SYP22_ARATH Syntaxin-22 OS=Arabidopsis thaliana GN=SYP22 PE=1 SV=1 1 254 2.0E-26
sp|Q5RBW6|STX12_PONAB Syntaxin-12 OS=Pongo abelii GN=STX12 PE=2 SV=1 23 254 9.0E-24
sp|O94651|PEP12_SCHPO Syntaxin pep12 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pep12 PE=1 SV=2 62 267 1.0E-23
sp|Q39233|SYP21_ARATH Syntaxin-21 OS=Arabidopsis thaliana GN=SYP21 PE=1 SV=1 1 253 1.0E-23
sp|Q86Y82|STX12_HUMAN Syntaxin-12 OS=Homo sapiens GN=STX12 PE=1 SV=1 23 252 1.0E-22
sp|O70439|STX7_MOUSE Syntaxin-7 OS=Mus musculus GN=Stx7 PE=1 SV=3 15 264 3.0E-20
sp|Q5R602|STX7_PONAB Syntaxin-7 OS=Pongo abelii GN=STX7 PE=2 SV=3 15 247 3.0E-19
sp|Q3ZBT5|STX7_BOVIN Syntaxin-7 OS=Bos taurus GN=STX7 PE=2 SV=1 15 247 4.0E-19
sp|Q54JY7|STX7A_DICDI Syntaxin-7A OS=Dictyostelium discoideum GN=syn7A PE=1 SV=1 15 266 5.0E-19
sp|O15400|STX7_HUMAN Syntaxin-7 OS=Homo sapiens GN=STX7 PE=1 SV=4 15 243 1.0E-18
sp|O70257|STX7_RAT Syntaxin-7 OS=Rattus norvegicus GN=Stx7 PE=1 SV=4 15 247 2.0E-18
sp|Q9ER00|STX12_MOUSE Syntaxin-12 OS=Mus musculus GN=Stx12 PE=1 SV=1 14 247 1.0E-17
sp|P32854|PEP12_YEAST Syntaxin PEP12 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PEP12 PE=1 SV=2 19 240 3.0E-17
sp|G3V7P1|STX12_RAT Syntaxin-12 OS=Rattus norvegicus GN=Stx12 PE=1 SV=1 14 247 4.0E-17
sp|O04378|SYP23_ARATH Syntaxin-23 OS=Arabidopsis thaliana GN=SYP23 PE=1 SV=1 1 228 3.0E-14
sp|Q12241|VAM3_YEAST Syntaxin VAM3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VAM3 PE=1 SV=1 17 245 6.0E-07
sp|Q08144|TLG2_YEAST T-SNARE affecting a late Golgi compartment protein 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TLG2 PE=1 SV=1 154 266 2.0E-06
sp|Q16623|STX1A_HUMAN Syntaxin-1A OS=Homo sapiens GN=STX1A PE=1 SV=1 179 267 3.0E-06
sp|P32851|STX1A_RAT Syntaxin-1A OS=Rattus norvegicus GN=Stx1a PE=1 SV=1 179 267 5.0E-06
sp|O35526|STX1A_MOUSE Syntaxin-1A OS=Mus musculus GN=Stx1a PE=1 SV=3 179 267 5.0E-06
sp|O16000|STX1A_CAEEL Syntaxin-1A homolog OS=Caenorhabditis elegans GN=unc-64 PE=1 SV=1 140 266 7.0E-06
sp|P32856|STX2_HUMAN Syntaxin-2 OS=Homo sapiens GN=STX2 PE=2 SV=3 179 267 9.0E-06
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GO

GO Term Description Terminal node
GO:0016020 membrane Yes
GO:0110165 cellular anatomical entity No
GO:0005575 cellular_component No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 24 0.45

Transmembrane Domains

Domain # Start End Length
1 247 266 19

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Click here for more information

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|911
MSYEQLSSLESGRRGAGGFSDDPAFRDLQHDLKSKLQSLLSGNRKLSNDVNVLGTRKDTPRLRERVHNSMEKARE
LCRDIGDGVKRLQAWDDLSKQQRYEQTKVSSDFQAALQEFQSLQRTALEKEKASVTAARAAHDPESGPSGGQGAS
LEQQQQQQLLSQMAPQDEVDFQEALIIEREEEIRNIEQGVGDLNVLFRQVAQIVDEQEVGIRTIADNVENVHDNT
QQADVETRQAARYQKAARNKSCCLLLILAVILTIVILAVVLG
Coding >Ophio5|911
ATGTCGTACGAGCAGCTCTCCAGCCTGGAGTCGGGTCGGCGCGGCGCCGGCGGCTTCAGTGACGATCCCGCGTTC
CGCGACCTCCAGCACGACCTCAAGTCCAAGTTGCAGTCGCTGCTGAGCGGCAATCGCAAGCTGTCCAACGATGTC
AACGTTCTGGGCACAAGAAAAGACACGCCGCGTCTGCGCGAGCGCGTCCACAACAGTATGGAAAAGGCCCGCGAG
CTGTGCAGGGACATCGGAGACGGCGTCAAGCGGCTACAGGCGTGGGACGATCTGTCGAAGCAACAAAGGTACGAG
CAGACCAAGGTTTCCAGCGACTTTCAAGCGGCCCTCCAAGAGTTTCAGAGCTTGCAAAGGACAGCGCTCGAGAAA
GAGAAGGCGTCCGTCACAGCGGCCCGTGCCGCTCACGATCCGGAATCAGGTCCCTCTGGCGGCCAGGGCGCCTCA
CTAGAGCAGCAGCAACAACAGCAGTTACTGTCGCAGATGGCCCCTCAAGACGAGGTCGACTTCCAGGAAGCTCTC
ATCATCGAGCGCGAGGAGGAGATCCGGAACATCGAGCAGGGCGTAGGCGATCTCAACGTCCTGTTTCGGCAGGTG
GCACAGATTGTCGACGAACAAGAGGTCGGCATCCGCACCATAGCGGACAACGTGGAAAACGTTCATGACAACACG
CAACAGGCAGATGTAGAGACGCGACAAGCCGCACGATACCAAAAGGCTGCGCGGAACAAGAGCTGCTGTCTGCTT
CTCATCCTGGCTGTGATTCTCACCATCGTTATTTTGGCCGTCGTCCTGGGT
Transcript >Ophio5|911
ATGTCGTACGAGCAGCTCTCCAGCCTGGAGTCGGGTCGGCGCGGCGCCGGCGGCTTCAGTGACGATCCCGCGTTC
CGCGACCTCCAGCACGACCTCAAGTCCAAGTTGCAGTCGCTGCTGAGCGGCAATCGCAAGCTGTCCAACGATGTC
AACGTTCTGGGCACAAGAAAAGACACGCCGCGTCTGCGCGAGCGCGTCCACAACAGTATGGAAAAGGCCCGCGAG
CTGTGCAGGGACATCGGAGACGGCGTCAAGCGGCTACAGGCGTGGGACGATCTGTCGAAGCAACAAAGGTACGAG
CAGACCAAGGTTTCCAGCGACTTTCAAGCGGCCCTCCAAGAGTTTCAGAGCTTGCAAAGGACAGCGCTCGAGAAA
GAGAAGGCGTCCGTCACAGCGGCCCGTGCCGCTCACGATCCGGAATCAGGTCCCTCTGGCGGCCAGGGCGCCTCA
CTAGAGCAGCAGCAACAACAGCAGTTACTGTCGCAGATGGCCCCTCAAGACGAGGTCGACTTCCAGGAAGCTCTC
ATCATCGAGCGCGAGGAGGAGATCCGGAACATCGAGCAGGGCGTAGGCGATCTCAACGTCCTGTTTCGGCAGGTG
GCACAGATTGTCGACGAACAAGAGGTCGGCATCCGCACCATAGCGGACAACGTGGAAAACGTTCATGACAACACG
CAACAGGCAGATGTAGAGACGCGACAAGCCGCACGATACCAAAAGGCTGCGCGGAACAAGAGCTGCTGTCTGCTT
CTCATCCTGGCTGTGATTCTCACCATCGTTATTTTGGCCGTCGTCCTGGGTTGA
Gene >Ophio5|911
ATGTCGTACGAGCAGCTCTCCAGCCTGGAGTCGGGTCGGCGCGGCGCCGGCGGCTTCAGTGACGATCCCGCGTTC
CGCGACCTCCAGCACGACCTCAAGTCCAAGTTGCAGTCGCTGCTGAGCGGCAATCGCAAGCTGTCCAACGATGTC
AACGTTCTGGGCACAAGAAAAGACACGCCGCGTCTGCGCGAGCGCGTCCACAACAGTATGGAAAAGGCCCGCGAG
CTGTGCAGGGACATCGGAGACGGCGTCAAGCGGCTACAGGCGTGGGACGATCTGTCGGTCAGTTCCCTGTGGCGC
TCTTTGGCCTCTACTTTCCATCGCTGACCGTGCTGTAGAAGCAACAAAGGTACGAGCAGACCAAGGTTTCCAGCG
ACTTTCAAGCGGCCCTCCAAGAGTTTCAGAGCTTGCAAAGGACAGCGCTCGAGAAAGAGAAGGCGTCCGTCACAG
CGGCCCGTGCCGCTCACGATCCGGAATCAGGTCCCTCTGGCGGCCAGGGCGCCTCACTAGAGCAGCAGCAACAAC
AGCAGTTACTGTCGCAGATGGCCCCTCAAGACGAGGTCGACTTCCAGGAAGCTCTCATCATCGAGCGCGAGGAGG
AGATCCGGAACATCGAGCAGGGCGTAGGCGATCTCAACGTCCTGTTTCGGCAGGTGGCACAGATTGTCGACGAAC
AAGAGGTCGGCATCCGCACCATAGCGGACAACGTGGAAAACGTTCATGACAACACGCAACAGGCAGATGTAGAGA
CGCGACAAGCCGCACGATACCAAAAGGCTGCGCGGAACAAGAGCTGCTGTCTGCTTCTCATCCTGGCTGTGATTC
TCACCATCGTTATTTTGGCCGTCGTCCTGGGTTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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