Fungal Genomics

at Utrecht University

General Properties

Protein ID	Ophio5\|910
Gene name
Location	scaffold_127:31307..33484
Strand	-
Gene length (bp)	2177
Transcript length (bp)	1983
Coding sequence length (bp)	1980
Protein length (aa)	660

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF09531	Ndc1_Nup	Nucleoporin protein Ndc1-Nup	1.9E-112	17	349
PF09531	Ndc1_Nup	Nucleoporin protein Ndc1-Nup	2.4E-49	351	591

Swissprot hits

Swissprot ID	Swissprot Description	Start	End	E-value
sp\|G0S235\|NDC1_CHATD	Nucleoporin NDC1 OS=Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) GN=NDC1 PE=3 SV=1	7	595	1.0E-137
sp\|O13961\|NDC1_SCHPO	Nuclear envelope protein ndc1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cut11 PE=2 SV=2	11	583	2.0E-21

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 39	0.5

Transmembrane Domains

Domain #	Start	End	Length
1	29	51	22
2	61	83	22
3	106	128	22
4	212	234	22
5	268	290	22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label	Description	Expression (RPKM)	Confidence interval (low)	Confidence interval (high)
SC16a	Pure fungal culture	62.15	33.81	90.50
CcL	In ants, during behavior modification	116.33	55.39	177.26
CcD	In ants, recently dead	134.01	67.89	200.12

Differential expression

Label1	Label2	Q-value	Significant difference
SC16a	CcL	0.009031	yes
SC16a	CcD	0.000286	yes
CcL	CcD	0.622401	no

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Ophio5\|910 MAVTPSRRAPYKDTLQPALHRRFSSTATLLLAASYLEALLLAPWTSFFWSWFPFGPCGIRTALIFACGLAILVLR IANYHVGFRTTTSGLQSLGSILASPRSYETGFWYGFSALLFCPVFLASMPGSANLQWITYLSGDRARLNERPLML ACHLIMCALWQTIRHYWLDIDHLDLGTMKPKAEDRGTDSTPPSGSLHAIVSQVPRVLSECAFQAGLSLPFTVGFY FVCLRSFVWGWAMTFLRPFYSLPQTRMPPQSWPIDLFLMARCVYAGTLLFVVWSTGNMAFSVFMVKEPLKNGKPL TSESKDPNGSLLNGLKSKKPSIQAFAMWELALIAKDFDARRQAIYRDIDQLRVDQYGKPDTSAVVQTTEPSVRPR VSGPLRDEPILTQTNRAYGLAGGVEKAWDQIGRAPGASPVSELSPLAKKTWKEAKDRLLSKEQQEVLSPDHIRSG LEHWAAGLVEVRWLGSLLRQDSGTRLTATILGTPYAEPTLYINAVEALCQLAVHSLSEDEFGIVQRDVASIVRTM TAVMDKVEALKRRFPSHWMDPRRVPRSPAVDAVTEALRTGLERLMTTFEPYSRDLGLSRGDVRLAKEAAATPLDL APVTKSTARGIEKKKTTTTTITSKARRAQEKNREKDREKDRKKDREWERAPRGLEMEQVQ
Coding	>Ophio5\|910 ATGGCCGTCACACCGAGCCGCAGAGCTCCTTACAAGGACACGCTACAGCCCGCCTTGCATAGACGCTTCTCCTCA ACGGCCACGCTCCTGCTAGCCGCGTCGTACCTCGAGGCTCTGCTCCTGGCGCCGTGGACTTCCTTCTTCTGGTCG TGGTTTCCCTTTGGGCCTTGCGGCATCCGCACAGCTCTCATCTTTGCCTGTGGACTCGCGATCCTCGTCCTCCGC ATCGCAAACTACCATGTCGGTTTCAGGACGACGACCTCGGGGCTGCAATCGCTCGGTTCAATACTGGCAAGCCCC CGGTCGTACGAGACGGGCTTCTGGTACGGCTTTTCGGCCCTACTCTTTTGCCCCGTCTTCCTGGCTTCCATGCCC GGCTCGGCCAACCTGCAATGGATCACGTACTTGAGCGGCGACCGTGCCCGGCTCAACGAGCGGCCTCTGATGTTG GCTTGTCATCTGATAATGTGCGCGCTGTGGCAGACTATTCGCCACTACTGGCTCGATATAGATCATCTCGATCTT GGGACGATGAAGCCGAAAGCAGAGGATCGAGGGACAGACTCGACCCCGCCGTCGGGGTCTCTTCACGCGATTGTG TCCCAGGTCCCCAGGGTCCTCTCGGAATGCGCGTTCCAAGCGGGGCTCTCTTTGCCCTTTACCGTTGGTTTCTAT TTTGTTTGCCTGAGATCCTTTGTCTGGGGATGGGCTATGACGTTTCTGCGGCCGTTCTACAGCCTTCCCCAGACG AGGATGCCCCCGCAGTCATGGCCTATCGACCTCTTTCTCATGGCACGCTGCGTCTACGCCGGGACGCTCCTGTTT GTTGTGTGGTCCACGGGGAATATGGCATTTTCGGTCTTCATGGTCAAAGAGCCCCTGAAGAACGGGAAGCCTCTG ACGTCGGAATCAAAGGACCCTAACGGGAGTCTTTTGAACGGGCTAAAGAGCAAGAAACCGTCTATCCAGGCATTC GCTATGTGGGAGTTGGCGCTCATTGCCAAGGATTTTGATGCGCGCAGACAGGCCATATACCGCGACATCGACCAG TTGCGTGTGGACCAGTACGGGAAGCCTGACACGTCGGCCGTCGTACAGACCACAGAGCCTTCAGTCAGGCCACGG GTATCGGGGCCGCTGCGGGATGAGCCGATCCTCACTCAGACCAATCGGGCCTACGGGCTGGCTGGGGGCGTTGAA AAGGCATGGGATCAAATTGGTCGAGCCCCCGGCGCTTCCCCGGTCTCGGAGCTGAGCCCGCTTGCGAAAAAGACG TGGAAGGAGGCCAAGGACCGGCTTCTGAGCAAGGAGCAGCAGGAGGTGCTCTCGCCGGACCACATCAGGAGCGGA CTGGAGCATTGGGCAGCCGGCTTGGTCGAGGTCCGGTGGCTCGGGAGCCTGCTACGGCAGGACTCGGGCACGCGG CTGACGGCGACGATACTGGGCACGCCATATGCGGAGCCGACGCTCTACATCAACGCCGTGGAGGCGCTCTGTCAG CTTGCAGTGCACAGCCTCTCGGAAGACGAGTTTGGCATCGTGCAGCGGGATGTGGCGAGTATCGTGCGGACGATG ACGGCGGTGATGGACAAGGTGGAAGCTCTCAAGCGGCGATTCCCGAGTCATTGGATGGACCCTCGGAGGGTGCCT CGGAGCCCCGCCGTGGACGCGGTCACGGAGGCGCTGCGCACGGGACTGGAGCGGCTAATGACGACGTTTGAGCCC TACAGCCGCGACTTGGGCTTGTCACGAGGAGACGTCCGGCTGGCCAAGGAGGCGGCGGCGACGCCTCTAGATTTG GCGCCTGTGACGAAAAGCACGGCCAGGGGCATCGAGAAGAAGAAGACGACGACGACGACGATTACGTCCAAGGCT AGACGGGCGCAGGAGAAGAACCGGGAGAAGGACCGGGAGAAGGACCGGAAGAAGGACCGGGAGTGGGAGAGGGCG CCGCGCGGCTTGGAGATGGAACAGGTGCAA
Transcript	>Ophio5\|910 ATGGCCGTCACACCGAGCCGCAGAGCTCCTTACAAGGACACGCTACAGCCCGCCTTGCATAGACGCTTCTCCTCA ACGGCCACGCTCCTGCTAGCCGCGTCGTACCTCGAGGCTCTGCTCCTGGCGCCGTGGACTTCCTTCTTCTGGTCG TGGTTTCCCTTTGGGCCTTGCGGCATCCGCACAGCTCTCATCTTTGCCTGTGGACTCGCGATCCTCGTCCTCCGC ATCGCAAACTACCATGTCGGTTTCAGGACGACGACCTCGGGGCTGCAATCGCTCGGTTCAATACTGGCAAGCCCC CGGTCGTACGAGACGGGCTTCTGGTACGGCTTTTCGGCCCTACTCTTTTGCCCCGTCTTCCTGGCTTCCATGCCC GGCTCGGCCAACCTGCAATGGATCACGTACTTGAGCGGCGACCGTGCCCGGCTCAACGAGCGGCCTCTGATGTTG GCTTGTCATCTGATAATGTGCGCGCTGTGGCAGACTATTCGCCACTACTGGCTCGATATAGATCATCTCGATCTT GGGACGATGAAGCCGAAAGCAGAGGATCGAGGGACAGACTCGACCCCGCCGTCGGGGTCTCTTCACGCGATTGTG TCCCAGGTCCCCAGGGTCCTCTCGGAATGCGCGTTCCAAGCGGGGCTCTCTTTGCCCTTTACCGTTGGTTTCTAT TTTGTTTGCCTGAGATCCTTTGTCTGGGGATGGGCTATGACGTTTCTGCGGCCGTTCTACAGCCTTCCCCAGACG AGGATGCCCCCGCAGTCATGGCCTATCGACCTCTTTCTCATGGCACGCTGCGTCTACGCCGGGACGCTCCTGTTT GTTGTGTGGTCCACGGGGAATATGGCATTTTCGGTCTTCATGGTCAAAGAGCCCCTGAAGAACGGGAAGCCTCTG ACGTCGGAATCAAAGGACCCTAACGGGAGTCTTTTGAACGGGCTAAAGAGCAAGAAACCGTCTATCCAGGCATTC GCTATGTGGGAGTTGGCGCTCATTGCCAAGGATTTTGATGCGCGCAGACAGGCCATATACCGCGACATCGACCAG TTGCGTGTGGACCAGTACGGGAAGCCTGACACGTCGGCCGTCGTACAGACCACAGAGCCTTCAGTCAGGCCACGG GTATCGGGGCCGCTGCGGGATGAGCCGATCCTCACTCAGACCAATCGGGCCTACGGGCTGGCTGGGGGCGTTGAA AAGGCATGGGATCAAATTGGTCGAGCCCCCGGCGCTTCCCCGGTCTCGGAGCTGAGCCCGCTTGCGAAAAAGACG TGGAAGGAGGCCAAGGACCGGCTTCTGAGCAAGGAGCAGCAGGAGGTGCTCTCGCCGGACCACATCAGGAGCGGA CTGGAGCATTGGGCAGCCGGCTTGGTCGAGGTCCGGTGGCTCGGGAGCCTGCTACGGCAGGACTCGGGCACGCGG CTGACGGCGACGATACTGGGCACGCCATATGCGGAGCCGACGCTCTACATCAACGCCGTGGAGGCGCTCTGTCAG CTTGCAGTGCACAGCCTCTCGGAAGACGAGTTTGGCATCGTGCAGCGGGATGTGGCGAGTATCGTGCGGACGATG ACGGCGGTGATGGACAAGGTGGAAGCTCTCAAGCGGCGATTCCCGAGTCATTGGATGGACCCTCGGAGGGTGCCT CGGAGCCCCGCCGTGGACGCGGTCACGGAGGCGCTGCGCACGGGACTGGAGCGGCTAATGACGACGTTTGAGCCC TACAGCCGCGACTTGGGCTTGTCACGAGGAGACGTCCGGCTGGCCAAGGAGGCGGCGGCGACGCCTCTAGATTTG GCGCCTGTGACGAAAAGCACGGCCAGGGGCATCGAGAAGAAGAAGACGACGACGACGACGATTACGTCCAAGGCT AGACGGGCGCAGGAGAAGAACCGGGAGAAGGACCGGGAGAAGGACCGGAAGAAGGACCGGGAGTGGGAGAGGGCG CCGCGCGGCTTGGAGATGGAACAGGTGCAATAG
Gene	>Ophio5\|910 ATGGCCGTCACACCGAGCCGCAGAGCTCCTTACAAGGACACGCTACAGCCCGCCTTGCATAGACGCTTCTCCTCA ACGGCCACGCTCCTGCTAGCCGCGTCGTACCTCGAGGCTCTGCTCCTGGCGCCGTGGACTTCCTGTGAGTGCAAA AAGCGCCTTTTTACCCTTTCTCACTCGGCCGATTCGACTTTGTGAAGCTGACGGTGCGCAGTCTTCTGGTCGTGG TTTCCCTTTGGGCCTTGCGGCATCCGCACAGCTCTCATCTTTGCCTGTGGACTCGCGATCCTCGTCCTCCGCATC GCAAACTACCATGTCGGTTTCAGGACGACGACCTCGGGGCTGCAATCGCTCGGTTCAATACTGGCAAGCCCCCGG TCGTACGAGACGGGCTTCTGGTACGGCTTTTCGGCCCTACTCTTTTGCCCCGTCTTCCTGGCTTCCATGCCCGGC TCGGCCAACCTGCAATGGATCACGTACTTGAGCGGCGACCGTGCCCGGCTCAACGAGCGGCCTCTGATGTTGGCT TGTCATCTGATAATGTGCGCGCTGTGGCAGACTATTCGCCACTACTGGCTCGATATAGATCATCTCGATCTTGGG ACGATGAAGCCGAAAGCAGAGGATCGAGGGACAGACTCGACCCCGCCGTCGGGGTCTCTTCACGCGATTGTGTCC CAGGTCCCCAGGGTCCTCTCGGAATGCGCGTTCCAAGCGGGGCTCTCTTTGCCCTTTACCGTTGGTTTCTATTTT GTTTGCCTGAGATCCTTTGTCTGGGGATGGGCTATGACGTTTCTGCGGCCGTTCTACAGCCTTCCCCAGACGAGG ATGCCCCCGCAGTCATGGCCTATCGACCTCTTTCTCATGGCACGCTGCGTCTACGCCGGGACGCTCCTGTTTGTT GTGTGGTCCACGGGGAATATGGCATTTTCGGTCTTCATGGTCAAAGAGCCCCTGAAGAACGGGAAGCCTCTGACG TCGGAATCAAAGGACCCTAACGGGAGTCTTTTGAACGGGCTAAAGAGCAAGAAACCGTCTATCCAGGCAAGTGTA GCCCGCTGCGTCGTCGCGACTCGAGTTGTCTCCCGCTAAACGGACATTAGGCATTCGCTATGTGGGAGTTGGCGC TCATTGCCAAGGATTTTGATGCGCGCAGACAGGCCATATACCGCGACATCGACCGTAAGGATGGCCCCATGTGGA CGCAGATTTGCGCCATCTGCATGGAAGTGCTGAAGAGCATAGAGTTGCGTGTGGACCAGTACGGGAAGCCTGACA CGTCGGCCGTCGTACAGACCACAGAGCCTTCAGTCAGGCCACGGGTATCGGGGCCGCTGCGGGATGAGCCGATCC TCACTCAGACCAATCGGGCCTACGGGCTGGCTGGGGGCGTTGAAAAGGCATGGGATCAAATTGGTCGAGCCCCCG GCGCTTCCCCGGTCTCGGAGCTGAGCCCGCTTGCGAAAAAGACGTGGAAGGAGGCCAAGGACCGGCTTCTGAGCA AGGAGCAGCAGGAGGTGCTCTCGCCGGACCACATCAGGAGCGGACTGGAGCATTGGGCAGCCGGCTTGGTCGAGG TCCGGTGGCTCGGGAGCCTGCTACGGCAGGACTCGGGCACGCGGCTGACGGCGACGATACTGGGCACGCCATATG CGGAGCCGACGCTCTACATCAACGCCGTGGAGGCGCTCTGTCAGCTTGCAGTGCACAGCCTCTCGGAAGACGAGT TTGGCATCGTGCAGCGGGATGTGGCGAGTATCGTGCGGACGATGACGGCGGTGATGGACAAGGTGGAAGCTCTCA AGCGGCGATTCCCGAGTCATTGGATGGACCCTCGGAGGGTGCCTCGGAGCCCCGCCGTGGACGCGGTCACGGAGG CGCTGCGCACGGGACTGGAGCGGCTAATGACGACGTTTGAGCCCTACAGCCGCGACTTGGGCTTGTCACGAGGAG ACGTCCGGCTGGCCAAGGAGGCGGCGGCGACGCCTCTAGATTTGGCGCCTGTGACGAAAAGCACGGCCAGGGGCA TCGAGAAGAAGAAGACGACGACGACGACGATTACGTCCAAGGCTAGACGGGCGCAGGAGAAGAACCGGGAGAAGG ACCGGGAGAAGGACCGGAAGAAGGACCGGGAGTGGGAGAGGGCGCCGCGCGGCTTGGAGATGGAACAGGTGCAAT AG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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