© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|889 |
| Gene name | |
| Location | scaffold_1261:181..1664 |
| Strand | + |
| Gene length (bp) | 1483 |
| Transcript length (bp) | 1428 |
| Coding sequence length (bp) | 1425 |
| Protein length (aa) | 475 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00320 | GATA | GATA zinc finger | 1.5E-15 | 423 | 458 |
| PF08447 | PAS_3 | PAS fold | 2.5E-11 | 152 | 221 |
| PF00989 | PAS | PAS fold | 1.0E-06 | 133 | 217 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q00858|CGPB_FUSSO | Cutinase gene palindrome-binding protein OS=Fusarium solani subsp. pisi PE=2 SV=1 | 26 | 462 | 0.0E+00 |
| sp|P78714|WC2_NEUCR | White collar 2 protein OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=wc-2 PE=1 SV=1 | 26 | 453 | 4.0E-171 |
| sp|Q54TM6|GTAI_DICDI | GATA zinc finger domain-containing protein 9 OS=Dictyostelium discoideum GN=gtaI PE=3 SV=1 | 389 | 460 | 5.0E-11 |
| sp|Q54KX0|GTAN_DICDI | GATA zinc finger domain-containing protein 14 OS=Dictyostelium discoideum GN=gtaN PE=3 SV=1 | 408 | 458 | 6.0E-11 |
| sp|Q55C49|GTAG_DICDI | GATA zinc finger domain-containing protein 7 OS=Dictyostelium discoideum GN=gtaG PE=3 SV=1 | 423 | 458 | 8.0E-11 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q00858|CGPB_FUSSO | Cutinase gene palindrome-binding protein OS=Fusarium solani subsp. pisi PE=2 SV=1 | 26 | 462 | 0.0E+00 |
| sp|P78714|WC2_NEUCR | White collar 2 protein OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=wc-2 PE=1 SV=1 | 26 | 453 | 4.0E-171 |
| sp|Q54TM6|GTAI_DICDI | GATA zinc finger domain-containing protein 9 OS=Dictyostelium discoideum GN=gtaI PE=3 SV=1 | 389 | 460 | 5.0E-11 |
| sp|Q54KX0|GTAN_DICDI | GATA zinc finger domain-containing protein 14 OS=Dictyostelium discoideum GN=gtaN PE=3 SV=1 | 408 | 458 | 6.0E-11 |
| sp|Q55C49|GTAG_DICDI | GATA zinc finger domain-containing protein 7 OS=Dictyostelium discoideum GN=gtaG PE=3 SV=1 | 423 | 458 | 8.0E-11 |
| sp|Q75JZ1|GTAC_DICDI | GATA zinc finger domain-containing protein 3 OS=Dictyostelium discoideum GN=gtaC PE=3 SV=1 | 423 | 460 | 1.0E-10 |
| sp|B0G188|GTAP_DICDI | GATA zinc finger domain-containing protein 16 OS=Dictyostelium discoideum GN=gtaP PE=3 SV=1 | 407 | 457 | 1.0E-10 |
| sp|Q54HA4|GTAO_DICDI | GATA zinc finger domain-containing protein 15 (Fragment) OS=Dictyostelium discoideum GN=gtaO PE=3 SV=1 | 418 | 474 | 1.0E-10 |
| sp|Q55GK0|GTAE_DICDI | GATA zinc finger domain-containing protein 5 OS=Dictyostelium discoideum GN=gtaE PE=3 SV=1 | 423 | 457 | 7.0E-10 |
| sp|Q75JZ0|GTAH_DICDI | GATA zinc finger domain-containing protein 8 OS=Dictyostelium discoideum GN=gtaH PE=3 SV=1 | 403 | 458 | 9.0E-10 |
| sp|Q54NM5|GTAL_DICDI | GATA zinc finger domain-containing protein 12 OS=Dictyostelium discoideum GN=gtaL PE=3 SV=1 | 409 | 458 | 1.0E-09 |
| sp|Q5KSV0|GTAK_DICDI | GATA zinc finger domain-containing protein 11 OS=Dictyostelium discoideum GN=gtaK PE=2 SV=1 | 394 | 471 | 3.0E-09 |
| sp|Q8VZP4|GAT10_ARATH | GATA transcription factor 10 OS=Arabidopsis thaliana GN=GATA10 PE=2 SV=1 | 422 | 452 | 5.0E-09 |
| sp|P40209|GAT2_YEAST | Protein GAT2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GAT2 PE=3 SV=1 | 410 | 458 | 2.0E-08 |
| sp|Q01371|WC1_NEUCR | White collar 1 protein OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=wc-1 PE=1 SV=2 | 423 | 455 | 2.0E-08 |
| sp|Q9FJ10|GAT16_ARATH | GATA transcription factor 16 OS=Arabidopsis thaliana GN=GATA16 PE=2 SV=1 | 419 | 457 | 2.0E-08 |
| sp|Q9ZPX0|GAT20_ARATH | GATA transcription factor 20 OS=Arabidopsis thaliana GN=GATA20 PE=2 SV=2 | 423 | 458 | 4.0E-08 |
| sp|Q6DBP8|GAT11_ARATH | GATA transcription factor 11 OS=Arabidopsis thaliana GN=GATA11 PE=2 SV=1 | 423 | 452 | 4.0E-08 |
| sp|Q6QPM2|GAT19_ARATH | GATA transcription factor 19 OS=Arabidopsis thaliana GN=GATA19 PE=2 SV=2 | 423 | 462 | 6.0E-08 |
| sp|Q8LG10|GAT15_ARATH | GATA transcription factor 15 OS=Arabidopsis thaliana GN=GATA15 PE=2 SV=2 | 419 | 457 | 7.0E-08 |
| sp|Q59LY1|BRG1_CANAL | Biofilm regulator 1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=BRG1 PE=1 SV=1 | 423 | 459 | 7.0E-08 |
| sp|Q5HZ36|GAT21_ARATH | GATA transcription factor 21 OS=Arabidopsis thaliana GN=GATA21 PE=1 SV=2 | 422 | 454 | 7.0E-08 |
| sp|Q9LIB5|GAT17_ARATH | GATA transcription factor 17 OS=Arabidopsis thaliana GN=GATA17 PE=2 SV=1 | 422 | 457 | 8.0E-08 |
| sp|P69781|GAT12_ARATH | GATA transcription factor 12 OS=Arabidopsis thaliana GN=GATA12 PE=2 SV=1 | 418 | 452 | 1.0E-07 |
| sp|Q54TE3|GTAJ_DICDI | GATA zinc finger domain-containing protein 10 OS=Dictyostelium discoideum GN=gtaJ PE=3 SV=1 | 423 | 458 | 1.0E-07 |
| sp|Q9SZI6|GAT22_ARATH | Putative GATA transcription factor 22 OS=Arabidopsis thaliana GN=GATA22 PE=3 SV=1 | 422 | 451 | 1.0E-07 |
| sp|Q8L4M6|GATA3_ARATH | GATA transcription factor 3 OS=Arabidopsis thaliana GN=GATA3 PE=2 SV=2 | 411 | 451 | 2.0E-07 |
| sp|Q9LT45|GAT29_ARATH | GATA transcription factor 29 OS=Arabidopsis thaliana GN=GATA29 PE=2 SV=1 | 423 | 459 | 2.0E-07 |
| sp|Q8LC59|GAT23_ARATH | GATA transcription factor 23 OS=Arabidopsis thaliana GN=GATA23 PE=2 SV=2 | 423 | 457 | 2.0E-07 |
| sp|Q10F25|GAT18_ORYSJ | GATA transcription factor 18 OS=Oryza sativa subsp. japonica GN=GATA18 PE=2 SV=1 | 418 | 465 | 2.0E-07 |
| sp|Q8LC79|GAT18_ARATH | GATA transcription factor 18 OS=Arabidopsis thaliana GN=GATA18 PE=2 SV=2 | 423 | 458 | 2.0E-07 |
| sp|O49743|GATA4_ARATH | GATA transcription factor 4 OS=Arabidopsis thaliana GN=GATA4 PE=2 SV=1 | 411 | 452 | 3.0E-07 |
| sp|A2XKR7|GAT18_ORYSI | GATA transcription factor 18 OS=Oryza sativa subsp. indica GN=GATA18 PE=3 SV=1 | 418 | 465 | 3.0E-07 |
| sp|Q01371|WC1_NEUCR | White collar 1 protein OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=wc-1 PE=1 SV=2 | 126 | 219 | 4.0E-07 |
| sp|Q8LAU9|GATA1_ARATH | GATA transcription factor 1 OS=Arabidopsis thaliana GN=GATA1 PE=2 SV=2 | 410 | 452 | 5.0E-07 |
| sp|Q9SKN6|GAT13_ARATH | Putative GATA transcription factor 13 OS=Arabidopsis thaliana GN=GATA13 PE=3 SV=2 | 380 | 452 | 7.0E-07 |
| sp|O49741|GATA2_ARATH | GATA transcription factor 2 OS=Arabidopsis thaliana GN=GATA2 PE=2 SV=1 | 423 | 452 | 7.0E-07 |
| sp|O82632|GATA9_ARATH | GATA transcription factor 9 OS=Arabidopsis thaliana GN=GATA9 PE=2 SV=1 | 423 | 452 | 9.0E-07 |
| sp|Q8GXL7|GAT24_ARATH | GATA transcription factor 24 OS=Arabidopsis thaliana GN=GATA24 PE=2 SV=2 | 420 | 460 | 1.0E-06 |
| sp|Q9LRH6|GAT25_ARATH | GATA transcription factor 25 OS=Arabidopsis thaliana GN=GATA25 PE=2 SV=2 | 420 | 470 | 2.0E-06 |
| sp|Q9FH57|GATA5_ARATH | GATA transcription factor 5 OS=Arabidopsis thaliana GN=GATA5 PE=2 SV=1 | 405 | 452 | 5.0E-06 |
| sp|Q550D5|GTAA_DICDI | Transcription factor stalky OS=Dictyostelium discoideum GN=stkA PE=1 SV=1 | 423 | 457 | 6.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006355 | regulation of transcription, DNA-templated | Yes |
| GO:0043565 | sequence-specific DNA binding | Yes |
| GO:0005515 | protein binding | Yes |
| GO:0051171 | regulation of nitrogen compound metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0060255 | regulation of macromolecule metabolic process | No |
| GO:0019222 | regulation of metabolic process | No |
| GO:0050794 | regulation of cellular process | No |
| GO:0031323 | regulation of cellular metabolic process | No |
| GO:0065007 | biological regulation | No |
| GO:0003676 | nucleic acid binding | No |
| GO:0010468 | regulation of gene expression | No |
| GO:0003677 | DNA binding | No |
| GO:0003674 | molecular_function | No |
| GO:0019219 | regulation of nucleobase-containing compound metabolic process | No |
| GO:0051252 | regulation of RNA metabolic process | No |
| GO:0005488 | binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0080090 | regulation of primary metabolic process | No |
| GO:0009889 | regulation of biosynthetic process | No |
| GO:0050789 | regulation of biological process | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:1903506 | regulation of nucleic acid-templated transcription | No |
| GO:2001141 | regulation of RNA biosynthetic process | No |
| GO:0010556 | regulation of macromolecule biosynthetic process | No |
| GO:0031326 | regulation of cellular biosynthetic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 12 | 0.45 |
| Transcription Factor Class (based on PFAM domains) |
|---|
| GATA type zinc finger |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|889 MSRRPPAPQGSFFGFSDLDLGCQDGDVLGLLDQSMLTSFDDVSMGMNAGSGGAGAGGDDSFDNSGVEADNEGSAL VGTSVDESIARSENQFNTAANNVPGAGPVPPAALSQMNLSNGSTLTEFTKRRNWPAKVVEELEDFLHILDANGRI KYASPSVLSVAGYTAEEILNVFLKDLIHIDDRGVFVAELNESIASGNPLRMFFRFKKKDGAYAMFEAVGHAHIAA AKFAPNPNNQSPFCQAVFMMARPYPTKNAGLLDSFLEHKVENERLRRRIAELRREEEAETDDVQRQWMQSQGGRS EAAFTDVSMTPSSTPLYHHMVGNRSEHGDSALTRENLEGAVAGSRPDSLRDKMARYEGASHTDTIEMLTGLRYGE GERSRGITTGNASPTLIRGDAGIAIPMDRESRPGEKKKKLKTAEEYVCTDCGTLDSPEWRKGPSGPKTLCNACGL RWAKKEKKRNNTGAQQATLMDQSMG |
| Coding | >Ophio5|889 ATGTCCCGCAGACCACCGGCGCCTCAGGGCTCCTTCTTTGGCTTCTCCGACCTGGACCTGGGCTGCCAGGATGGC GACGTCCTCGGTCTCCTGGACCAGAGCATGCTGACGTCGTTTGACGATGTCTCCATGGGGATGAACGCCGGCAGC GGAGGCGCAGGCGCAGGTGGCGACGACTCTTTCGACAACAGCGGCGTCGAAGCCGACAACGAAGGCAGCGCCCTT GTCGGCACCAGCGTTGATGAGTCTATTGCCCGCTCTGAGAACCAGTTCAACACTGCCGCCAACAACGTGCCCGGC GCCGGGCCAGTGCCGCCCGCTGCGCTCAGCCAGATGAACCTATCCAACGGCAGTACTCTGACTGAGTTCACCAAG CGGAGGAACTGGCCGGCCAAGGTGGTTGAGGAGCTCGAGGACTTTCTGCACATCCTCGACGCCAACGGCCGCATC AAGTATGCGTCCCCCAGCGTCCTGAGCGTCGCCGGCTATACCGCCGAGGAGATTCTCAACGTCTTCCTCAAGGAC CTCATCCACATCGACGATCGCGGCGTCTTCGTCGCCGAGCTCAACGAGTCAATCGCCTCGGGGAACCCGTTGCGC ATGTTCTTCCGCTTCAAGAAAAAGGACGGTGCCTATGCCATGTTCGAAGCCGTCGGCCACGCCCACATCGCCGCC GCCAAGTTCGCACCGAACCCGAACAACCAGTCACCCTTTTGCCAGGCCGTCTTCATGATGGCGCGGCCCTACCCG ACCAAGAACGCCGGTCTACTCGACTCCTTCCTCGAGCACAAGGTGGAGAACGAACGGCTGCGGCGGCGTATCGCC GAGCTGCGGAGGGAGGAGGAGGCCGAGACGGACGATGTCCAGCGCCAGTGGATGCAGAGCCAGGGCGGTCGGTCC GAGGCGGCTTTTACCGACGTGTCCATGACGCCCTCGTCGACGCCGCTCTACCACCACATGGTCGGCAACCGGTCA GAGCACGGCGACAGCGCCCTGACGAGGGAAAACCTTGAAGGGGCCGTAGCCGGCAGCCGGCCCGACTCTCTGCGC GACAAGATGGCGCGCTACGAGGGCGCCTCCCACACCGACACCATCGAGATGCTGACGGGCCTGCGGTACGGCGAG GGCGAGCGCAGCCGGGGCATCACGACGGGCAACGCCAGCCCGACATTGATCCGTGGCGACGCCGGCATCGCCATC CCCATGGACCGGGAATCTCGGCCGGGCGAGAAGAAAAAGAAGCTGAAGACGGCGGAGGAATACGTCTGCACGGAC TGCGGCACTCTCGATTCTCCCGAGTGGAGAAAGGGGCCCAGCGGACCCAAGACGCTCTGCAACGCGTGCGGCCTG CGCTGGGCCAAAAAGGAGAAGAAGCGCAACAACACGGGCGCGCAGCAGGCGACGCTGATGGACCAGTCCATGGGC |
| Transcript | >Ophio5|889 ATGTCCCGCAGACCACCGGCGCCTCAGGGCTCCTTCTTTGGCTTCTCCGACCTGGACCTGGGCTGCCAGGATGGC GACGTCCTCGGTCTCCTGGACCAGAGCATGCTGACGTCGTTTGACGATGTCTCCATGGGGATGAACGCCGGCAGC GGAGGCGCAGGCGCAGGTGGCGACGACTCTTTCGACAACAGCGGCGTCGAAGCCGACAACGAAGGCAGCGCCCTT GTCGGCACCAGCGTTGATGAGTCTATTGCCCGCTCTGAGAACCAGTTCAACACTGCCGCCAACAACGTGCCCGGC GCCGGGCCAGTGCCGCCCGCTGCGCTCAGCCAGATGAACCTATCCAACGGCAGTACTCTGACTGAGTTCACCAAG CGGAGGAACTGGCCGGCCAAGGTGGTTGAGGAGCTCGAGGACTTTCTGCACATCCTCGACGCCAACGGCCGCATC AAGTATGCGTCCCCCAGCGTCCTGAGCGTCGCCGGCTATACCGCCGAGGAGATTCTCAACGTCTTCCTCAAGGAC CTCATCCACATCGACGATCGCGGCGTCTTCGTCGCCGAGCTCAACGAGTCAATCGCCTCGGGGAACCCGTTGCGC ATGTTCTTCCGCTTCAAGAAAAAGGACGGTGCCTATGCCATGTTCGAAGCCGTCGGCCACGCCCACATCGCCGCC GCCAAGTTCGCACCGAACCCGAACAACCAGTCACCCTTTTGCCAGGCCGTCTTCATGATGGCGCGGCCCTACCCG ACCAAGAACGCCGGTCTACTCGACTCCTTCCTCGAGCACAAGGTGGAGAACGAACGGCTGCGGCGGCGTATCGCC GAGCTGCGGAGGGAGGAGGAGGCCGAGACGGACGATGTCCAGCGCCAGTGGATGCAGAGCCAGGGCGGTCGGTCC GAGGCGGCTTTTACCGACGTGTCCATGACGCCCTCGTCGACGCCGCTCTACCACCACATGGTCGGCAACCGGTCA GAGCACGGCGACAGCGCCCTGACGAGGGAAAACCTTGAAGGGGCCGTAGCCGGCAGCCGGCCCGACTCTCTGCGC GACAAGATGGCGCGCTACGAGGGCGCCTCCCACACCGACACCATCGAGATGCTGACGGGCCTGCGGTACGGCGAG GGCGAGCGCAGCCGGGGCATCACGACGGGCAACGCCAGCCCGACATTGATCCGTGGCGACGCCGGCATCGCCATC CCCATGGACCGGGAATCTCGGCCGGGCGAGAAGAAAAAGAAGCTGAAGACGGCGGAGGAATACGTCTGCACGGAC TGCGGCACTCTCGATTCTCCCGAGTGGAGAAAGGGGCCCAGCGGACCCAAGACGCTCTGCAACGCGTGCGGCCTG CGCTGGGCCAAAAAGGAGAAGAAGCGCAACAACACGGGCGCGCAGCAGGCGACGCTGATGGACCAGTCCATGGGC TAG |
| Gene | >Ophio5|889 ATGTCCCGCAGACCACCGGCGCCTCAGGGCTCCTTCTTTGGCTTCTCCGACCTGGACCTGGGCTGCCAGGATGGC GACGTCCTCGGTCTCCTGGACCAGAGCATGCTGACGTCGTTTGACGATGTCTCCATGGGGATGAACGCCGGCAGC GGAGGCGCAGGCGCAGGTGGCGACGACTCTTTCGACAACAGCGGCGTCGAAGCCGACAACGAAGGCAGCGCCCTT GTCGGCACCAGCGTTGATGAGTCTATTGCCCGCTCTGAGAACCAGTTCAACACTGCCGCCAACAACGTGCCCGGC GCCGGGCCAGTGCCGCCCGCTGCGCTCAGCCAGATGAACCTATCCAACGGCAGTACTCTGACTGAGTTCACCAAG CGGAGGAACTGGCCGGCCAAGGTGGTTGAGGAGCTCGAGGACTTTCTGCACATCCTCGACGCCAACGGCCGCATC AAGTATGCGTCCCCCAGCGTCCTGAGCGTCGCCGGCTATACCGCCGAGGAGATTCTCAACGTCTTCCTCAAGGAC CTCATCCACATCGACGATCGCGGCGTCTTCGTCGCCGAGCTCAACGAGTCAATCGCCTCGGGGAACCCGTTGCGC ATGTTCTTCCGCTTCAAGAAAAAGGACGGTGCCTATGCCATGTTCGAAGCCGTCGGCCACGCCCACATCGCCGCC GCCAAGTTCGCACCGAACCCGAACAACCAGTCACCCTTTTGCCAGGCCGTCTTCATGATGGCGCGGCCCTACCCG ACCAAGAACGCCGGTCTACTCGACTCCTTCCTCGAGCACAAGGTGGAGAACGAACGGCTGCGGCGGCGTATCGCC GAGCTGCGGAGGGAGGAGGAGGCCGAGACGGACGATGTCCAGCGCCAGTGGATGCAGAGCCAGGGCGGTCGGTCC GAGGCGGCTTTTACCGACGTGTCCATGACGCCCTCGTCGACGCCGCTCTACCACCACATGGTCGGCAACCGGTCA GAGCACGGCGACAGCGCCCTGACGAGGGAAAACCTTGAAGGGGCCGTAGCCGGCAGCCGGCCCGACTCTCTGCGC GACAAGATGGCGCGCTACGAGGGCGCCTCCCACACCGACACCATCGAGATGCTGACGGGCCTGCGGTACGGCGAG GGCGAGCGCAGCCGGGGCATCACGACGGGCAACGCCAGCCCGACATTGATCCGTGGCGACGCCGGCATCGCCATC CCCATGGACCGGGAATCTCGGCCGGGCGAGAAGAAAAAGAAGCTGAAGACGGCGGAGGAATACGTCTGCACGGAC TGCGGTACGTCGGCCCGTAAGCGAGGCCGTCGTCGCCAACGGCTGACTCGAGACGACAGGCACTCTCGATTCTCC CGAGTGGAGAAAGGGGCCCAGCGGACCCAAGACGCTCTGCAACGCGTGCGGCCTGCGCTGGGCCAAAAAGGAGAA GAAGCGCAACAACACGGGCGCGCAGCAGGCGACGCTGATGGACCAGTCCATGGGCTAG |