© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|888 |
| Gene name | |
| Location | scaffold_1260:820..1360 |
| Strand | - |
| Gene length (bp) | 540 |
| Transcript length (bp) | 465 |
| Coding sequence length (bp) | 462 |
| Protein length (aa) | 154 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02466 | Tim17 | Tim17/Tim22/Tim23/Pmp24 family | 1.2E-31 | 13 | 119 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P59670|TIM17_NEUCR | Mitochondrial import inner membrane translocase subunit tim17 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=tim17 PE=2 SV=1 | 1 | 154 | 8.0E-89 |
| sp|P39515|TIM17_YEAST | Mitochondrial import inner membrane translocase subunit TIM17 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TIM17 PE=1 SV=1 | 2 | 154 | 1.0E-71 |
| sp|P87130|TIM17_SCHPO | Mitochondrial import inner membrane translocase subunit tim17 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tim17 PE=3 SV=1 | 2 | 146 | 5.0E-70 |
| sp|Q9SP35|TI172_ARATH | Mitochondrial import inner membrane translocase subunit TIM17-2 OS=Arabidopsis thaliana GN=TIM17-2 PE=1 SV=2 | 2 | 140 | 3.0E-42 |
| sp|Q99595|TI17A_HUMAN | Mitochondrial import inner membrane translocase subunit Tim17-A OS=Homo sapiens GN=TIMM17A PE=1 SV=1 | 2 | 152 | 7.0E-42 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P59670|TIM17_NEUCR | Mitochondrial import inner membrane translocase subunit tim17 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=tim17 PE=2 SV=1 | 1 | 154 | 8.0E-89 |
| sp|P39515|TIM17_YEAST | Mitochondrial import inner membrane translocase subunit TIM17 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TIM17 PE=1 SV=1 | 2 | 154 | 1.0E-71 |
| sp|P87130|TIM17_SCHPO | Mitochondrial import inner membrane translocase subunit tim17 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tim17 PE=3 SV=1 | 2 | 146 | 5.0E-70 |
| sp|Q9SP35|TI172_ARATH | Mitochondrial import inner membrane translocase subunit TIM17-2 OS=Arabidopsis thaliana GN=TIM17-2 PE=1 SV=2 | 2 | 140 | 3.0E-42 |
| sp|Q99595|TI17A_HUMAN | Mitochondrial import inner membrane translocase subunit Tim17-A OS=Homo sapiens GN=TIMM17A PE=1 SV=1 | 2 | 152 | 7.0E-42 |
| sp|Q9Z0V8|TI17A_MOUSE | Mitochondrial import inner membrane translocase subunit Tim17-A OS=Mus musculus GN=Timm17a PE=1 SV=1 | 2 | 144 | 2.0E-41 |
| sp|O35092|TI17A_RAT | Mitochondrial import inner membrane translocase subunit Tim17-A OS=Rattus norvegicus GN=Timm17a PE=2 SV=1 | 2 | 144 | 3.0E-41 |
| sp|Q9LN27|TI171_ARATH | Mitochondrial import inner membrane translocase subunit TIM17-1 OS=Arabidopsis thaliana GN=TIM17-1 PE=2 SV=1 | 2 | 133 | 5.0E-41 |
| sp|O60830|TI17B_HUMAN | Mitochondrial import inner membrane translocase subunit Tim17-B OS=Homo sapiens GN=TIMM17B PE=1 SV=1 | 2 | 152 | 5.0E-41 |
| sp|Q9Z0V7|TI17B_MOUSE | Mitochondrial import inner membrane translocase subunit Tim17-B OS=Mus musculus GN=Timm17b PE=1 SV=1 | 2 | 151 | 6.0E-41 |
| sp|Q2HJE9|TI17B_BOVIN | Mitochondrial import inner membrane translocase subunit Tim17-B OS=Bos taurus GN=TIMM17B PE=2 SV=1 | 2 | 150 | 7.0E-41 |
| sp|Q9VNA0|TI17A_DROME | Probable mitochondrial import inner membrane translocase subunit Tim17 1 OS=Drosophila melanogaster GN=Tim17b1 PE=2 SV=2 | 2 | 143 | 6.0E-39 |
| sp|O44477|TIM17_CAEEL | Probable mitochondrial import inner membrane translocase subunit Tim17 OS=Caenorhabditis elegans GN=tim-17 PE=3 SV=1 | 2 | 148 | 1.0E-36 |
| sp|Q9VN97|TI17D_DROME | Probable mitochondrial import inner membrane translocase subunit Tim17 4 OS=Drosophila melanogaster GN=Tim17a2 PE=3 SV=1 | 1 | 135 | 1.0E-34 |
| sp|Q9VGA2|TI17C_DROME | Probable mitochondrial import inner membrane translocase subunit Tim17 3 OS=Drosophila melanogaster GN=Tim17a1 PE=2 SV=1 | 1 | 135 | 2.0E-34 |
| sp|Q9LYG1|TI173_ARATH | Mitochondrial import inner membrane translocase subunit TIM17-3 OS=Arabidopsis thaliana GN=TIM17-3 PE=2 SV=1 | 10 | 124 | 2.0E-28 |
| sp|Q54K35|TIM17_DICDI | Mitochondrial import inner membrane translocase subunit tim17 OS=Dictyostelium discoideum GN=timm17 PE=3 SV=1 | 7 | 124 | 2.0E-21 |
| sp|Q6BZY4|TIM22_YARLI | Mitochondrial import inner membrane translocase subunit TIM22 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=TIM22 PE=3 SV=2 | 32 | 124 | 1.0E-09 |
| sp|Q6BT35|TIM22_DEBHA | Mitochondrial import inner membrane translocase subunit TIM22 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=TIM22 PE=3 SV=1 | 31 | 124 | 5.0E-09 |
| sp|P87146|TIM22_SCHPO | Mitochondrial import inner membrane translocase subunit tim22 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tim22 PE=3 SV=1 | 62 | 108 | 1.0E-07 |
| sp|Q6FT37|TIM22_CANGA | Mitochondrial import inner membrane translocase subunit TIM22 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=TIM22 PE=3 SV=1 | 55 | 124 | 4.0E-07 |
| sp|A1XJK0|TI224_ARATH | Mitochondrial import inner membrane translocase subunit TIM22-4 OS=Arabidopsis thaliana GN=TIM22-4 PE=2 SV=3 | 62 | 124 | 4.0E-07 |
| sp|A2RVP7|TI221_ARATH | Mitochondrial import inner membrane translocase subunit TIM22-1 OS=Arabidopsis thaliana GN=TIM22-1 PE=1 SV=1 | 62 | 124 | 7.0E-07 |
| sp|Q12328|TIM22_YEAST | Mitochondrial import inner membrane translocase subunit TIM22 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TIM22 PE=1 SV=1 | 23 | 109 | 1.0E-06 |
| sp|Q6CRJ6|TIM22_KLULA | Mitochondrial import inner membrane translocase subunit TIM22 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=TIM22 PE=3 SV=1 | 29 | 124 | 2.0E-06 |
| sp|Q5M7K0|TIM22_XENTR | Mitochondrial import inner membrane translocase subunit Tim22 OS=Xenopus tropicalis GN=timm22 PE=2 SV=1 | 62 | 124 | 4.0E-06 |
| sp|Q9C1E8|TIM22_NEUCR | Mitochondrial import inner membrane translocase subunit tim22 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=tim22 PE=3 SV=2 | 32 | 124 | 5.0E-06 |
| sp|Q75E80|TIM22_ASHGO | Mitochondrial import inner membrane translocase subunit TIM22 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=TIM22 PE=3 SV=1 | 55 | 124 | 7.0E-06 |
| sp|Q9JKW1|TIM22_RAT | Mitochondrial import inner membrane translocase subunit Tim22 OS=Rattus norvegicus GN=Timm22 PE=2 SV=2 | 62 | 116 | 7.0E-06 |
| sp|Q9CQ85|TIM22_MOUSE | Mitochondrial import inner membrane translocase subunit Tim22 OS=Mus musculus GN=Timm22 PE=1 SV=1 | 62 | 116 | 8.0E-06 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 10 | 32 | 22 |
| 2 | 58 | 77 | 19 |
| 3 | 87 | 106 | 19 |
| 4 | 113 | 135 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|888 MDHGRDPCPWVILNDFGGAFCMGAIGGTIWHGIKGFRNSPYGERRIGSITAIKMRAPVLGGNFGVWGGLFSTFDC AVKGVRKKEDPYNAIIAGFFTGGSLAIRGGFKSARNGAIGCAVLLAVIEGVGITFTKVFAHSTKLEVPQPPPSME PAAA |
| Coding | >Ophio5|888 ATGGATCACGGACGCGATCCCTGTCCCTGGGTCATTCTCAACGACTTTGGCGGCGCTTTTTGCATGGGCGCCATT GGCGGCACCATCTGGCATGGCATCAAGGGCTTCCGCAACTCTCCCTACGGCGAGCGGCGCATCGGTAGCATCACG GCCATCAAGATGCGCGCACCCGTCTTGGGCGGCAACTTTGGCGTCTGGGGAGGCCTGTTCTCCACCTTTGACTGC GCCGTCAAGGGTGTTCGCAAGAAGGAGGATCCGTACAATGCCATCATCGCCGGCTTCTTCACCGGTGGCTCGCTC GCCATCCGCGGGGGCTTCAAGTCGGCTCGCAACGGCGCTATCGGCTGCGCCGTTCTGCTCGCCGTCATCGAGGGG GTCGGCATCACTTTTACCAAGGTCTTTGCTCATTCGACCAAGCTTGAGGTGCCTCAGCCGCCGCCGAGCATGGAA CCGGCCGCCGCA |
| Transcript | >Ophio5|888 ATGGATCACGGACGCGATCCCTGTCCCTGGGTCATTCTCAACGACTTTGGCGGCGCTTTTTGCATGGGCGCCATT GGCGGCACCATCTGGCATGGCATCAAGGGCTTCCGCAACTCTCCCTACGGCGAGCGGCGCATCGGTAGCATCACG GCCATCAAGATGCGCGCACCCGTCTTGGGCGGCAACTTTGGCGTCTGGGGAGGCCTGTTCTCCACCTTTGACTGC GCCGTCAAGGGTGTTCGCAAGAAGGAGGATCCGTACAATGCCATCATCGCCGGCTTCTTCACCGGTGGCTCGCTC GCCATCCGCGGGGGCTTCAAGTCGGCTCGCAACGGCGCTATCGGCTGCGCCGTTCTGCTCGCCGTCATCGAGGGG GTCGGCATCACTTTTACCAAGGTCTTTGCTCATTCGACCAAGCTTGAGGTGCCTCAGCCGCCGCCGAGCATGGAA CCGGCCGCCGCATAG |
| Gene | >Ophio5|888 ATGGATCACGGACGCGATCCCTGTCCCTGGGTCATTCTCAACGACTTTGGCGGCGCTTTTTGCATGGGCGTACGT CCCTTTGCCTTCCCTTCCCGTACCTGGTGAAAATTCGTCGCAGCTGACGGGGGGGGGCCCAACGCGCAGGCCATT GGCGGCACCATCTGGCATGGCATCAAGGGCTTCCGCAACTCTCCCTACGGCGAGCGGCGCATCGGTAGCATCACG GCCATCAAGATGCGCGCACCCGTCTTGGGCGGCAACTTTGGCGTCTGGGGAGGCCTGTTCTCCACCTTTGACTGC GCCGTCAAGGGTGTTCGCAAGAAGGAGGATCCGTACAATGCCATCATCGCCGGCTTCTTCACCGGTGGCTCGCTC GCCATCCGCGGGGGCTTCAAGTCGGCTCGCAACGGCGCTATCGGCTGCGCCGTTCTGCTCGCCGTCATCGAGGGG GTCGGCATCACTTTTACCAAGGTCTTTGCTCATTCGACCAAGCTTGAGGTGCCTCAGCCGCCGCCGAGCATGGAA CCGGCCGCCGCATAG |