Protein ID | Ophio5|870 |
Gene name | |
Location | scaffold_1259:917..2195 |
Strand | - |
Gene length (bp) | 1278 |
Transcript length (bp) | 969 |
Coding sequence length (bp) | 966 |
Protein length (aa) | 322 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF00293 | NUDIX | NUDIX domain | 3.0E-09 | 170 | 264 |
PF15916 | DUF4743 | Domain of unknown function (DUF4743) | 8.1E-08 | 86 | 149 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|P41888|TNR3_SCHPO | Thiamine pyrophosphokinase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tnr3 PE=3 SV=1 | 55 | 305 | 9.0E-41 |
sp|P47173|YJ9J_YEAST | Uncharacterized protein YJR142W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YJR142W PE=1 SV=1 | 55 | 305 | 2.0E-40 |
sp|Q8VXZ0|NUD20_ARATH | Nudix hydrolase 20, chloroplastic OS=Arabidopsis thaliana GN=NUDT20 PE=2 SV=1 | 55 | 301 | 2.0E-28 |
sp|P0C026|NUD24_ARATH | Nudix hydrolase 24, chloroplastic OS=Arabidopsis thaliana GN=NUDT24 PE=2 SV=1 | 96 | 293 | 6.0E-26 |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
No | 1 - 11 | 0.45 |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Ophio5|870 MRNNKNNNTPSIHAQGGARRFPYGQDQGSIATVPELARNGLFILLWEDDEGRYPIGYMLDRVVEELLRVPPSVRG PVDLNGNNRSILLFQLPTEGERSRLVAGLAHYWRVRETFGLLRRWRDEAWPVYSRKGELLFTVERAAMGLLGTMR YGAHLTAYINDASASHGIKLWVARRAANKATFPGMLDNTVAGGLVPGEDPIDCIVREAVEEASLSVDLVRRSVSC WVYDLHLPANETPKPNDGEVDQFFLCDVDQIKADMADGKFKPNCAVVLLDFFIRHGILTKADEDYLDIINSRMHR ELPFPGPHKGDWHPVEKPSSHF |
Coding | >Ophio5|870 ATGCGTAATAATAAGAACAACAACACACCTTCTATCCATGCACAGGGTGGCGCGCGAAGATTTCCGTATGGCCAA GACCAAGGTAGCATTGCCACTGTACCAGAACTGGCTCGAAACGGCCTATTTATTCTTCTATGGGAAGATGATGAG GGGCGATACCCAATCGGCTACATGCTCGACCGTGTAGTGGAGGAGCTCTTGCGAGTACCACCCAGCGTACGAGGC CCCGTGGATCTGAACGGGAACAACCGTTCAATCCTCCTATTTCAACTTCCGACGGAAGGCGAGAGGAGCCGACTC GTTGCGGGCCTGGCACATTATTGGCGCGTTCGCGAGACTTTTGGTCTCCTTCGACGATGGAGAGACGAGGCTTGG CCAGTCTACAGCCGCAAAGGCGAGCTCCTCTTCACTGTCGAACGGGCAGCTATGGGTTTACTGGGTACAATGCGG TACGGCGCGCATCTCACTGCGTATATTAACGACGCCTCTGCTTCTCATGGTATCAAGTTGTGGGTTGCGAGGCGC GCCGCAAACAAAGCTACTTTTCCAGGCATGCTCGACAACACCGTTGCTGGCGGTCTTGTGCCTGGCGAAGACCCA ATTGATTGTATCGTCCGCGAGGCTGTCGAGGAGGCGAGCCTGTCTGTCGACTTGGTGCGGCGTTCTGTCAGCTGC TGGGTTTACGATCTACATCTACCCGCTAACGAGACTCCCAAGCCCAACGACGGCGAGGTCGACCAGTTCTTCCTC TGCGATGTGGATCAGATTAAAGCCGACATGGCCGATGGGAAGTTCAAACCGAACTGCGCCGTGGTTCTTCTTGAT TTTTTCATCCGTCATGGTATCCTGACTAAGGCCGACGAAGATTATCTCGACATCATCAATAGCAGAATGCATCGC GAGTTACCATTCCCTGGTCCGCATAAGGGGGACTGGCATCCGGTCGAGAAACCGTCGTCACACTTT |
Transcript | >Ophio5|870 ATGCGTAATAATAAGAACAACAACACACCTTCTATCCATGCACAGGGTGGCGCGCGAAGATTTCCGTATGGCCAA GACCAAGGTAGCATTGCCACTGTACCAGAACTGGCTCGAAACGGCCTATTTATTCTTCTATGGGAAGATGATGAG GGGCGATACCCAATCGGCTACATGCTCGACCGTGTAGTGGAGGAGCTCTTGCGAGTACCACCCAGCGTACGAGGC CCCGTGGATCTGAACGGGAACAACCGTTCAATCCTCCTATTTCAACTTCCGACGGAAGGCGAGAGGAGCCGACTC GTTGCGGGCCTGGCACATTATTGGCGCGTTCGCGAGACTTTTGGTCTCCTTCGACGATGGAGAGACGAGGCTTGG CCAGTCTACAGCCGCAAAGGCGAGCTCCTCTTCACTGTCGAACGGGCAGCTATGGGTTTACTGGGTACAATGCGG TACGGCGCGCATCTCACTGCGTATATTAACGACGCCTCTGCTTCTCATGGTATCAAGTTGTGGGTTGCGAGGCGC GCCGCAAACAAAGCTACTTTTCCAGGCATGCTCGACAACACCGTTGCTGGCGGTCTTGTGCCTGGCGAAGACCCA ATTGATTGTATCGTCCGCGAGGCTGTCGAGGAGGCGAGCCTGTCTGTCGACTTGGTGCGGCGTTCTGTCAGCTGC TGGGTTTACGATCTACATCTACCCGCTAACGAGACTCCCAAGCCCAACGACGGCGAGGTCGACCAGTTCTTCCTC TGCGATGTGGATCAGATTAAAGCCGACATGGCCGATGGGAAGTTCAAACCGAACTGCGCCGTGGTTCTTCTTGAT TTTTTCATCCGTCATGGTATCCTGACTAAGGCCGACGAAGATTATCTCGACATCATCAATAGCAGAATGCATCGC GAGTTACCATTCCCTGGTCCGCATAAGGGGGACTGGCATCCGGTCGAGAAACCGTCGTCACACTTTTGA |
Gene | >Ophio5|870 ATGCGTAATAATAAGAACAACAACACACCTTCTATCCATGCACAGGGTGGCGCGCGAAGGTAGATTAGGCTTGCG AATGTTTAATTCTTGCCGTCATACAATGTGCTACCTTTACCACTGTGAGAGCATAGGAGAAAATGATGTCCAACT TAAACATAATCGATGCTACGGATAAGTTTGTTAGCACTTTCAGTATTGTCGTCCTCACGCCTTCTTCAATGACCC TTTCATTTATATTTGTTATCTTAGTCAGATCTCCACGATTCACTGCTCTAACGTCCGGAGCCTAGATTTCCGTAT GGCCAAGACCAAGGTAGCATTGCCACTGTACCAGAACTGGCTCGAAACGGCCTATTTATTCTTCTATGGGAAGAT GATGAGGGGCGATACCCAATCGGCTACATGCTCGACCGTGTAGTGGAGGAGCTCTTGCGAGTACCACCCAGCGTA CGAGGCCCCGTGGATCTGAACGGGAACAACCGTTCAATCCTCCTATTTCAACTTCCGACGGAAGGCGAGAGGAGC CGACTCGTTGCGGGCCTGGCACATTATTGGCGCGTTCGCGAGACTTTTGGTCTCCTTCGACGATGGAGAGACGAG GCTTGGCCAGTCTACAGCCGCAAAGGCGAGCTCCTCTTCACTGTCGAACGGGCAGCTATGGGTTTACTGGGTACA ATGCGGTACGGCGCGCATCTCACTGCGTATATTAACGACGCCTCTGCTTCTCATGGTATCAAGTTGTGGGTTGCG AGGCGCGCCGCAAACAAAGCTACTTTTCCAGGCATGCTCGACAACACCGTTGCTGGCGGTCTTGTGCCTGGCGAA GACCCAATTGATTGTATCGTCCGCGAGGCTGTCGAGGAGGCGAGCCTGTCTGTCGACTTGGTGCGGCGTTCTGTC AGCTGCGTAGGCACAGTCACATACATATACATTACTGACGAAGCTCACTTTGGCGAGGATGGCCTCATCTATCCC GAGTGTCAGTGGGTTTACGATCTACATCTACCCGCTAACGAGACTCCCAAGCCCAACGACGGCGAGGTCGACCAG TTCTTCCTCTGCGATGTGGATCAGATTAAAGCCGACATGGCCGATGGGAAGTTCAAACCGAACTGCGCCGTGGTT CTTCTTGATTTTTTCATCCGTCATGGTATCCTGACTAAGGCCGACGAAGATTATCTCGACATCATCAATAGCAGA ATGCATCGCGAGTTACCATTCCCTGGTCCGCATAAGGGGGACTGGCATCCGGTCGAGAAACCGTCGTCACACTTT TGA |