Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|870
Gene name
Locationscaffold_1259:917..2195
Strand-
Gene length (bp)1278
Transcript length (bp)969
Coding sequence length (bp)966
Protein length (aa) 322

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00293 NUDIX NUDIX domain 3.0E-09 170 264
PF15916 DUF4743 Domain of unknown function (DUF4743) 8.1E-08 86 149

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|P41888|TNR3_SCHPO Thiamine pyrophosphokinase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tnr3 PE=3 SV=1 55 305 9.0E-41
sp|P47173|YJ9J_YEAST Uncharacterized protein YJR142W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YJR142W PE=1 SV=1 55 305 2.0E-40
sp|Q8VXZ0|NUD20_ARATH Nudix hydrolase 20, chloroplastic OS=Arabidopsis thaliana GN=NUDT20 PE=2 SV=1 55 301 2.0E-28
sp|P0C026|NUD24_ARATH Nudix hydrolase 24, chloroplastic OS=Arabidopsis thaliana GN=NUDT24 PE=2 SV=1 96 293 6.0E-26

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 11 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|870
MRNNKNNNTPSIHAQGGARRFPYGQDQGSIATVPELARNGLFILLWEDDEGRYPIGYMLDRVVEELLRVPPSVRG
PVDLNGNNRSILLFQLPTEGERSRLVAGLAHYWRVRETFGLLRRWRDEAWPVYSRKGELLFTVERAAMGLLGTMR
YGAHLTAYINDASASHGIKLWVARRAANKATFPGMLDNTVAGGLVPGEDPIDCIVREAVEEASLSVDLVRRSVSC
WVYDLHLPANETPKPNDGEVDQFFLCDVDQIKADMADGKFKPNCAVVLLDFFIRHGILTKADEDYLDIINSRMHR
ELPFPGPHKGDWHPVEKPSSHF
Coding >Ophio5|870
ATGCGTAATAATAAGAACAACAACACACCTTCTATCCATGCACAGGGTGGCGCGCGAAGATTTCCGTATGGCCAA
GACCAAGGTAGCATTGCCACTGTACCAGAACTGGCTCGAAACGGCCTATTTATTCTTCTATGGGAAGATGATGAG
GGGCGATACCCAATCGGCTACATGCTCGACCGTGTAGTGGAGGAGCTCTTGCGAGTACCACCCAGCGTACGAGGC
CCCGTGGATCTGAACGGGAACAACCGTTCAATCCTCCTATTTCAACTTCCGACGGAAGGCGAGAGGAGCCGACTC
GTTGCGGGCCTGGCACATTATTGGCGCGTTCGCGAGACTTTTGGTCTCCTTCGACGATGGAGAGACGAGGCTTGG
CCAGTCTACAGCCGCAAAGGCGAGCTCCTCTTCACTGTCGAACGGGCAGCTATGGGTTTACTGGGTACAATGCGG
TACGGCGCGCATCTCACTGCGTATATTAACGACGCCTCTGCTTCTCATGGTATCAAGTTGTGGGTTGCGAGGCGC
GCCGCAAACAAAGCTACTTTTCCAGGCATGCTCGACAACACCGTTGCTGGCGGTCTTGTGCCTGGCGAAGACCCA
ATTGATTGTATCGTCCGCGAGGCTGTCGAGGAGGCGAGCCTGTCTGTCGACTTGGTGCGGCGTTCTGTCAGCTGC
TGGGTTTACGATCTACATCTACCCGCTAACGAGACTCCCAAGCCCAACGACGGCGAGGTCGACCAGTTCTTCCTC
TGCGATGTGGATCAGATTAAAGCCGACATGGCCGATGGGAAGTTCAAACCGAACTGCGCCGTGGTTCTTCTTGAT
TTTTTCATCCGTCATGGTATCCTGACTAAGGCCGACGAAGATTATCTCGACATCATCAATAGCAGAATGCATCGC
GAGTTACCATTCCCTGGTCCGCATAAGGGGGACTGGCATCCGGTCGAGAAACCGTCGTCACACTTT
Transcript >Ophio5|870
ATGCGTAATAATAAGAACAACAACACACCTTCTATCCATGCACAGGGTGGCGCGCGAAGATTTCCGTATGGCCAA
GACCAAGGTAGCATTGCCACTGTACCAGAACTGGCTCGAAACGGCCTATTTATTCTTCTATGGGAAGATGATGAG
GGGCGATACCCAATCGGCTACATGCTCGACCGTGTAGTGGAGGAGCTCTTGCGAGTACCACCCAGCGTACGAGGC
CCCGTGGATCTGAACGGGAACAACCGTTCAATCCTCCTATTTCAACTTCCGACGGAAGGCGAGAGGAGCCGACTC
GTTGCGGGCCTGGCACATTATTGGCGCGTTCGCGAGACTTTTGGTCTCCTTCGACGATGGAGAGACGAGGCTTGG
CCAGTCTACAGCCGCAAAGGCGAGCTCCTCTTCACTGTCGAACGGGCAGCTATGGGTTTACTGGGTACAATGCGG
TACGGCGCGCATCTCACTGCGTATATTAACGACGCCTCTGCTTCTCATGGTATCAAGTTGTGGGTTGCGAGGCGC
GCCGCAAACAAAGCTACTTTTCCAGGCATGCTCGACAACACCGTTGCTGGCGGTCTTGTGCCTGGCGAAGACCCA
ATTGATTGTATCGTCCGCGAGGCTGTCGAGGAGGCGAGCCTGTCTGTCGACTTGGTGCGGCGTTCTGTCAGCTGC
TGGGTTTACGATCTACATCTACCCGCTAACGAGACTCCCAAGCCCAACGACGGCGAGGTCGACCAGTTCTTCCTC
TGCGATGTGGATCAGATTAAAGCCGACATGGCCGATGGGAAGTTCAAACCGAACTGCGCCGTGGTTCTTCTTGAT
TTTTTCATCCGTCATGGTATCCTGACTAAGGCCGACGAAGATTATCTCGACATCATCAATAGCAGAATGCATCGC
GAGTTACCATTCCCTGGTCCGCATAAGGGGGACTGGCATCCGGTCGAGAAACCGTCGTCACACTTTTGA
Gene >Ophio5|870
ATGCGTAATAATAAGAACAACAACACACCTTCTATCCATGCACAGGGTGGCGCGCGAAGGTAGATTAGGCTTGCG
AATGTTTAATTCTTGCCGTCATACAATGTGCTACCTTTACCACTGTGAGAGCATAGGAGAAAATGATGTCCAACT
TAAACATAATCGATGCTACGGATAAGTTTGTTAGCACTTTCAGTATTGTCGTCCTCACGCCTTCTTCAATGACCC
TTTCATTTATATTTGTTATCTTAGTCAGATCTCCACGATTCACTGCTCTAACGTCCGGAGCCTAGATTTCCGTAT
GGCCAAGACCAAGGTAGCATTGCCACTGTACCAGAACTGGCTCGAAACGGCCTATTTATTCTTCTATGGGAAGAT
GATGAGGGGCGATACCCAATCGGCTACATGCTCGACCGTGTAGTGGAGGAGCTCTTGCGAGTACCACCCAGCGTA
CGAGGCCCCGTGGATCTGAACGGGAACAACCGTTCAATCCTCCTATTTCAACTTCCGACGGAAGGCGAGAGGAGC
CGACTCGTTGCGGGCCTGGCACATTATTGGCGCGTTCGCGAGACTTTTGGTCTCCTTCGACGATGGAGAGACGAG
GCTTGGCCAGTCTACAGCCGCAAAGGCGAGCTCCTCTTCACTGTCGAACGGGCAGCTATGGGTTTACTGGGTACA
ATGCGGTACGGCGCGCATCTCACTGCGTATATTAACGACGCCTCTGCTTCTCATGGTATCAAGTTGTGGGTTGCG
AGGCGCGCCGCAAACAAAGCTACTTTTCCAGGCATGCTCGACAACACCGTTGCTGGCGGTCTTGTGCCTGGCGAA
GACCCAATTGATTGTATCGTCCGCGAGGCTGTCGAGGAGGCGAGCCTGTCTGTCGACTTGGTGCGGCGTTCTGTC
AGCTGCGTAGGCACAGTCACATACATATACATTACTGACGAAGCTCACTTTGGCGAGGATGGCCTCATCTATCCC
GAGTGTCAGTGGGTTTACGATCTACATCTACCCGCTAACGAGACTCCCAAGCCCAACGACGGCGAGGTCGACCAG
TTCTTCCTCTGCGATGTGGATCAGATTAAAGCCGACATGGCCGATGGGAAGTTCAAACCGAACTGCGCCGTGGTT
CTTCTTGATTTTTTCATCCGTCATGGTATCCTGACTAAGGCCGACGAAGATTATCTCGACATCATCAATAGCAGA
ATGCATCGCGAGTTACCATTCCCTGGTCCGCATAAGGGGGACTGGCATCCGGTCGAGAAACCGTCGTCACACTTT
TGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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