Fungal Genomics

at Utrecht University

General Properties

Protein ID	Ophio5\|861
Gene name
Location	scaffold_1250:199..1245
Strand	-
Gene length (bp)	1046
Transcript length (bp)	870
Coding sequence length (bp)	867
Protein length (aa)	289

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF04193	PQ-loop	PQ loop repeat	8.9E-12	160	218

Swissprot hits

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Swissprot ID	Swissprot Description	Start	End	E-value
sp\|Q8N2U9\|PQLC1_HUMAN	PQ-loop repeat-containing protein 1 OS=Homo sapiens GN=PQLC1 PE=1 SV=1	17	252	1.0E-26
sp\|Q03687\|YMP0_YEAST	Uncharacterized membrane protein YMR010W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YMR010W PE=1 SV=1	11	238	1.0E-26
sp\|Q5M880\|PQLC1_RAT	PQ-loop repeat-containing protein 1 OS=Rattus norvegicus GN=Pqlc1 PE=1 SV=2	3	252	7.0E-26
sp\|Q80XM9\|PQLC1_MOUSE	PQ-loop repeat-containing protein 1 OS=Mus musculus GN=Pqlc1 PE=1 SV=1	3	252	1.0E-25
sp\|Q0VCC1\|PQLC1_BOVIN	PQ-loop repeat-containing protein 1 OS=Bos taurus GN=PQLC1 PE=2 SV=1	17	239	6.0E-23

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Swissprot ID	Swissprot Description	Start	End	E-value
sp\|Q8N2U9\|PQLC1_HUMAN	PQ-loop repeat-containing protein 1 OS=Homo sapiens GN=PQLC1 PE=1 SV=1	17	252	1.0E-26
sp\|Q03687\|YMP0_YEAST	Uncharacterized membrane protein YMR010W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YMR010W PE=1 SV=1	11	238	1.0E-26
sp\|Q5M880\|PQLC1_RAT	PQ-loop repeat-containing protein 1 OS=Rattus norvegicus GN=Pqlc1 PE=1 SV=2	3	252	7.0E-26
sp\|Q80XM9\|PQLC1_MOUSE	PQ-loop repeat-containing protein 1 OS=Mus musculus GN=Pqlc1 PE=1 SV=1	3	252	1.0E-25
sp\|Q0VCC1\|PQLC1_BOVIN	PQ-loop repeat-containing protein 1 OS=Bos taurus GN=PQLC1 PE=2 SV=1	17	239	6.0E-23
sp\|Q6NRS2\|PQLC1_XENLA	PQ-loop repeat-containing protein 1 OS=Xenopus laevis GN=pqlc1 PE=2 SV=1	1	243	3.0E-20

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GO

(None)

SignalP

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SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 11	0.5

Transmembrane Domains

Domain #	Start	End	Length
1	4	26	22
2	38	60	22
3	70	88	18
4	134	156	22
5	161	183	22
6	190	212	22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Click here for more information

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Ophio5\|861 MSGWLAACAGYVAPLFIVLSPILSYGDQALSMHRAKSSAGFSLDIPLIMLVASFFRIFYWHGARFDTSLLIQSLI MVGMQLVLLKIALDHRPGPSSKGGEASMPFVGGQHDNLLSAQRPFNFWQWRSPKPYWQFLVYLVCALMAFEVVLA AMPPVYALWSATLGYVGLSVEATLAIPQILANSQARSCKGFRLSVLVAWLGGDALKILWFFTSTSDIPVAFKVCG VFQAACDCLLGAQYFQYGEGEHCVAEHPLEEGQWSSAVMASERPHSRSFSQTKGGVIYTDAEVD
Coding	>Ophio5\|861 ATGAGCGGCTGGCTCGCAGCTTGCGCCGGCTACGTCGCCCCGCTCTTCATCGTTCTCTCGCCCATCCTCTCTTAT GGCGATCAGGCGCTGTCCATGCATCGCGCCAAGTCGAGCGCCGGTTTCTCGCTCGATATTCCCCTCATCATGCTC GTCGCCTCATTCTTCCGCATCTTCTACTGGCATGGCGCCCGATTCGACACCAGCCTGCTGATACAGTCGCTCATC ATGGTCGGCATGCAGCTCGTCCTGCTCAAGATCGCCCTCGATCACCGACCCGGGCCCTCTTCCAAGGGCGGCGAG GCCAGCATGCCCTTTGTCGGCGGCCAGCATGACAATCTGCTGTCCGCCCAGCGGCCCTTTAACTTTTGGCAGTGG CGCTCTCCCAAGCCATACTGGCAGTTTCTCGTCTACCTCGTCTGCGCCCTCATGGCCTTCGAAGTCGTCCTGGCC GCCATGCCCCCCGTGTACGCCCTCTGGTCGGCCACGCTCGGCTACGTCGGCCTCTCGGTCGAAGCGACGCTGGCC ATCCCCCAGATCCTAGCCAACTCGCAGGCCCGCTCGTGCAAGGGCTTCCGGCTCTCGGTCCTCGTCGCCTGGCTG GGCGGCGACGCCCTCAAGATTCTGTGGTTCTTCACCTCGACCAGCGACATCCCCGTCGCCTTCAAGGTCTGCGGC GTCTTCCAGGCCGCCTGCGACTGTCTCCTCGGCGCCCAGTACTTCCAGTACGGCGAAGGCGAGCACTGCGTCGCC GAGCACCCACTCGAAGAGGGCCAGTGGTCCAGCGCCGTCATGGCCAGCGAGCGGCCTCATAGTCGGAGCTTCTCG CAGACGAAGGGGGGTGTCATCTACACCGATGCCGAGGTCGAC
Transcript	>Ophio5\|861 ATGAGCGGCTGGCTCGCAGCTTGCGCCGGCTACGTCGCCCCGCTCTTCATCGTTCTCTCGCCCATCCTCTCTTAT GGCGATCAGGCGCTGTCCATGCATCGCGCCAAGTCGAGCGCCGGTTTCTCGCTCGATATTCCCCTCATCATGCTC GTCGCCTCATTCTTCCGCATCTTCTACTGGCATGGCGCCCGATTCGACACCAGCCTGCTGATACAGTCGCTCATC ATGGTCGGCATGCAGCTCGTCCTGCTCAAGATCGCCCTCGATCACCGACCCGGGCCCTCTTCCAAGGGCGGCGAG GCCAGCATGCCCTTTGTCGGCGGCCAGCATGACAATCTGCTGTCCGCCCAGCGGCCCTTTAACTTTTGGCAGTGG CGCTCTCCCAAGCCATACTGGCAGTTTCTCGTCTACCTCGTCTGCGCCCTCATGGCCTTCGAAGTCGTCCTGGCC GCCATGCCCCCCGTGTACGCCCTCTGGTCGGCCACGCTCGGCTACGTCGGCCTCTCGGTCGAAGCGACGCTGGCC ATCCCCCAGATCCTAGCCAACTCGCAGGCCCGCTCGTGCAAGGGCTTCCGGCTCTCGGTCCTCGTCGCCTGGCTG GGCGGCGACGCCCTCAAGATTCTGTGGTTCTTCACCTCGACCAGCGACATCCCCGTCGCCTTCAAGGTCTGCGGC GTCTTCCAGGCCGCCTGCGACTGTCTCCTCGGCGCCCAGTACTTCCAGTACGGCGAAGGCGAGCACTGCGTCGCC GAGCACCCACTCGAAGAGGGCCAGTGGTCCAGCGCCGTCATGGCCAGCGAGCGGCCTCATAGTCGGAGCTTCTCG CAGACGAAGGGGGGTGTCATCTACACCGATGCCGAGGTCGACTAG
Gene	>Ophio5\|861 ATGAGCGGCTGGCTCGCAGCTTGCGCCGGCTACGTCGCCCCGCTCTTCATCGTTCTCTCGCCCATCCTCTCTTAT GGCGATCAGGCGCTGTCCATGCATCGCGCCAAGTCGAGCGCCGGTTTCTCGCTCGATATTCCCCTCATCATGCTC GTCGCCTCATTCTTCCGGTTCGTTTCCTCTGTCTGTCCGGGCTCTGGTTGCCATCTGGAGCTAATTCCTCTCCCC CCCTCCAGCATCTTCTACTGGCATGGCGCCCGATTCGACACCAGCCTGCTGATACAGTCGCTCATCATGGTCGGC ATGCAGCTCGTCCTGCTCAAGATCGCCCTCGATCACCGACCCGGGCCCTCTTCCAAGGGCGGCGAGGCCAGCATG CCCTTTGTCGGCGGCCAGCATGACAATCTGCTGTCCGCCCAGCGGCCCTTTAACTTTTGGCAGTGGCGCTCTCCC AAGCCGTGAGCGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCTGTCTATACAAGACAAC AGTTCTCGCCCGTGCATCGACTGACTTGGCGTTGCCTCAGATACTGGCAGTTTCTCGTCTACCTCGTCTGCGCCC TCATGGCCTTCGAAGTCGTCCTGGCCGCCATGCCCCCCGTGTACGCCCTCTGGTCGGCCACGCTCGGCTACGTCG GCCTCTCGGTCGAAGCGACGCTGGCCATCCCCCAGATCCTAGCCAACTCGCAGGCCCGCTCGTGCAAGGGCTTCC GGCTCTCGGTCCTCGTCGCCTGGCTGGGCGGCGACGCCCTCAAGATTCTGTGGTTCTTCACCTCGACCAGCGACA TCCCCGTCGCCTTCAAGGTCTGCGGCGTCTTCCAGGCCGCCTGCGACTGTCTCCTCGGCGCCCAGTACTTCCAGT ACGGCGAAGGCGAGCACTGCGTCGCCGAGCACCCACTCGAAGAGGGCCAGTGGTCCAGCGCCGTCATGGCCAGCG AGCGGCCTCATAGTCGGAGCTTCTCGCAGACGAAGGGGGGTGTCATCTACACCGATGCCGAGGTCGACTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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