Fungal Genomics

at Utrecht University

General Properties

Protein ID	Ophio5\|8609
Gene name
Location	scaffold_99:41778..43071
Strand	+
Gene length (bp)	1293
Transcript length (bp)	1293
Coding sequence length (bp)	1290
Protein length (aa)	430

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF11790	Glyco_hydro_cc	Glycosyl hydrolase catalytic core	2.1E-56	193	426

Swissprot hits

Swissprot ID	Swissprot Description	Start	End	E-value
sp\|Q09788\|ASL1_SCHPO	Alkali-sensitive linkage protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=asl1 PE=1 SV=1	190	426	1.0E-15

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
Yes	1 - 22	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label	Description	Expression (RPKM)	Confidence interval (low)	Confidence interval (high)
SC16a	Pure fungal culture	785.95	294.08	1277.82
CcL	In ants, during behavior modification	1790.83	399.50	3182.15
CcD	In ants, recently dead	738.97	280.98	1196.96

Differential expression

Label1	Label2	Q-value	Significant difference
SC16a	CcL	0.022654	yes
SC16a	CcD	0.870403	no
CcL	CcD	0.013694	yes

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Ophio5\|8609 MSAKKIVILAAVAALAEQASAFNSHRHLHRREPKYGAVHWVTVWTTATTTIYDAEKTAVSGPEHVANYAPVQAEA VKPTSNAVYLKSEAPAQPPAPAAQSPAPAAQSPAPYAPPPPPEVESEAPAVPSPRSPSAAPEAPKTTLEIQPKPI NSLLQPIAPYVPPLAPSVAPSNPSGGGNGNSASGSPGFSGKRGLAYNDASLANNFDDQCNGCSGWGYNWGSTPQG LSSKISYVPMLWGNKPEFTKNWHSDAQKAVDNGAKAMFSFNEPDNAGQANMSPQQAAELHVQYMNPWGGKALIGS PAITNSGQAGQGIEWLGSFVKACDNMQEKCRIDFCVVHWYSQPEYADTLYDHIAKAHKVCGQKPIWLTEFGPVDA GGQPMDAPAFLKTVVRKLDEIEYLHAYAPFMCSAGKLMSSANQLSAMGKAYADVS
Coding	>Ophio5\|8609 ATGTCGGCCAAAAAGATCGTCATCCTCGCCGCCGTTGCCGCTCTGGCTGAGCAGGCTTCGGCTTTCAACTCACAC CGCCATCTTCATCGTCGCGAGCCCAAGTACGGCGCTGTCCACTGGGTCACCGTCTGGACCACCGCCACCACCACC ATCTATGATGCCGAGAAGACTGCAGTGTCTGGACCTGAGCATGTCGCCAACTACGCTCCGGTCCAAGCCGAAGCC GTCAAGCCAACCTCCAACGCCGTCTATCTCAAGTCTGAGGCTCCCGCTCAGCCTCCTGCACCCGCTGCTCAGTCG CCCGCTCCCGCTGCCCAGTCTCCGGCCCCCTATGCCCCGCCCCCTCCTCCCGAGGTTGAGTCTGAGGCTCCCGCT GTTCCGTCGCCCCGGTCGCCTTCCGCCGCGCCCGAGGCCCCAAAGACGACGCTCGAGATTCAGCCCAAGCCCATT AATTCACTCCTGCAGCCCATCGCCCCGTACGTGCCACCCCTGGCGCCGTCGGTTGCCCCCTCAAACCCCTCTGGC GGTGGCAACGGCAATTCTGCATCGGGCTCTCCTGGCTTCTCGGGCAAGCGAGGCTTGGCTTACAACGACGCGAGC CTCGCCAACAATTTCGACGACCAGTGCAACGGATGCAGCGGCTGGGGCTACAACTGGGGATCCACGCCCCAGGGT CTCTCGTCCAAGATCAGCTACGTCCCCATGCTTTGGGGCAACAAGCCCGAGTTCACCAAGAACTGGCACTCGGAC GCGCAAAAGGCCGTCGACAACGGCGCCAAGGCCATGTTCAGCTTCAACGAGCCCGACAACGCCGGCCAGGCCAAC ATGAGCCCTCAGCAGGCGGCCGAGCTCCACGTGCAATACATGAACCCTTGGGGCGGCAAGGCCCTCATCGGCTCA CCGGCCATCACCAACAGCGGCCAAGCCGGCCAGGGCATCGAGTGGCTCGGCAGCTTCGTGAAGGCGTGCGACAAC ATGCAGGAAAAGTGCCGCATCGACTTTTGCGTCGTTCACTGGTACTCGCAGCCCGAATACGCCGACACGCTGTAC GACCACATCGCCAAGGCCCACAAGGTGTGCGGCCAGAAGCCCATCTGGCTGACCGAGTTCGGCCCCGTCGACGCT GGCGGCCAGCCGATGGACGCCCCGGCCTTCCTCAAGACGGTCGTTCGCAAGCTCGACGAGATTGAGTACCTTCAC GCCTACGCGCCCTTCATGTGCTCCGCGGGCAAGCTCATGTCTTCGGCCAACCAGTTGAGCGCCATGGGCAAGGCC TACGCCGATGTGTCT
Transcript	>Ophio5\|8609 ATGTCGGCCAAAAAGATCGTCATCCTCGCCGCCGTTGCCGCTCTGGCTGAGCAGGCTTCGGCTTTCAACTCACAC CGCCATCTTCATCGTCGCGAGCCCAAGTACGGCGCTGTCCACTGGGTCACCGTCTGGACCACCGCCACCACCACC ATCTATGATGCCGAGAAGACTGCAGTGTCTGGACCTGAGCATGTCGCCAACTACGCTCCGGTCCAAGCCGAAGCC GTCAAGCCAACCTCCAACGCCGTCTATCTCAAGTCTGAGGCTCCCGCTCAGCCTCCTGCACCCGCTGCTCAGTCG CCCGCTCCCGCTGCCCAGTCTCCGGCCCCCTATGCCCCGCCCCCTCCTCCCGAGGTTGAGTCTGAGGCTCCCGCT GTTCCGTCGCCCCGGTCGCCTTCCGCCGCGCCCGAGGCCCCAAAGACGACGCTCGAGATTCAGCCCAAGCCCATT AATTCACTCCTGCAGCCCATCGCCCCGTACGTGCCACCCCTGGCGCCGTCGGTTGCCCCCTCAAACCCCTCTGGC GGTGGCAACGGCAATTCTGCATCGGGCTCTCCTGGCTTCTCGGGCAAGCGAGGCTTGGCTTACAACGACGCGAGC CTCGCCAACAATTTCGACGACCAGTGCAACGGATGCAGCGGCTGGGGCTACAACTGGGGATCCACGCCCCAGGGT CTCTCGTCCAAGATCAGCTACGTCCCCATGCTTTGGGGCAACAAGCCCGAGTTCACCAAGAACTGGCACTCGGAC GCGCAAAAGGCCGTCGACAACGGCGCCAAGGCCATGTTCAGCTTCAACGAGCCCGACAACGCCGGCCAGGCCAAC ATGAGCCCTCAGCAGGCGGCCGAGCTCCACGTGCAATACATGAACCCTTGGGGCGGCAAGGCCCTCATCGGCTCA CCGGCCATCACCAACAGCGGCCAAGCCGGCCAGGGCATCGAGTGGCTCGGCAGCTTCGTGAAGGCGTGCGACAAC ATGCAGGAAAAGTGCCGCATCGACTTTTGCGTCGTTCACTGGTACTCGCAGCCCGAATACGCCGACACGCTGTAC GACCACATCGCCAAGGCCCACAAGGTGTGCGGCCAGAAGCCCATCTGGCTGACCGAGTTCGGCCCCGTCGACGCT GGCGGCCAGCCGATGGACGCCCCGGCCTTCCTCAAGACGGTCGTTCGCAAGCTCGACGAGATTGAGTACCTTCAC GCCTACGCGCCCTTCATGTGCTCCGCGGGCAAGCTCATGTCTTCGGCCAACCAGTTGAGCGCCATGGGCAAGGCC TACGCCGATGTGTCTTAG
Gene	>Ophio5\|8609 ATGTCGGCCAAAAAGATCGTCATCCTCGCCGCCGTTGCCGCTCTGGCTGAGCAGGCTTCGGCTTTCAACTCACAC CGCCATCTTCATCGTCGCGAGCCCAAGTACGGCGCTGTCCACTGGGTCACCGTCTGGACCACCGCCACCACCACC ATCTATGATGCCGAGAAGACTGCAGTGTCTGGACCTGAGCATGTCGCCAACTACGCTCCGGTCCAAGCCGAAGCC GTCAAGCCAACCTCCAACGCCGTCTATCTCAAGTCTGAGGCTCCCGCTCAGCCTCCTGCACCCGCTGCTCAGTCG CCCGCTCCCGCTGCCCAGTCTCCGGCCCCCTATGCCCCGCCCCCTCCTCCCGAGGTTGAGTCTGAGGCTCCCGCT GTTCCGTCGCCCCGGTCGCCTTCCGCCGCGCCCGAGGCCCCAAAGACGACGCTCGAGATTCAGCCCAAGCCCATT AATTCACTCCTGCAGCCCATCGCCCCGTACGTGCCACCCCTGGCGCCGTCGGTTGCCCCCTCAAACCCCTCTGGC GGTGGCAACGGCAATTCTGCATCGGGCTCTCCTGGCTTCTCGGGCAAGCGAGGCTTGGCTTACAACGACGCGAGC CTCGCCAACAATTTCGACGACCAGTGCAACGGATGCAGCGGCTGGGGCTACAACTGGGGATCCACGCCCCAGGGT CTCTCGTCCAAGATCAGCTACGTCCCCATGCTTTGGGGCAACAAGCCCGAGTTCACCAAGAACTGGCACTCGGAC GCGCAAAAGGCCGTCGACAACGGCGCCAAGGCCATGTTCAGCTTCAACGAGCCCGACAACGCCGGCCAGGCCAAC ATGAGCCCTCAGCAGGCGGCCGAGCTCCACGTGCAATACATGAACCCTTGGGGCGGCAAGGCCCTCATCGGCTCA CCGGCCATCACCAACAGCGGCCAAGCCGGCCAGGGCATCGAGTGGCTCGGCAGCTTCGTGAAGGCGTGCGACAAC ATGCAGGAAAAGTGCCGCATCGACTTTTGCGTCGTTCACTGGTACTCGCAGCCCGAATACGCCGACACGCTGTAC GACCACATCGCCAAGGCCCACAAGGTGTGCGGCCAGAAGCCCATCTGGCTGACCGAGTTCGGCCCCGTCGACGCT GGCGGCCAGCCGATGGACGCCCCGGCCTTCCTCAAGACGGTCGTTCGCAAGCTCGACGAGATTGAGTACCTTCAC GCCTACGCGCCCTTCATGTGCTCCGCGGGCAAGCTCATGTCTTCGGCCAACCAGTTGAGCGCCATGGGCAAGGCC TACGCCGATGTGTCTTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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