Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|8604
Gene name
Locationscaffold_99:19877..22129
Strand-
Gene length (bp)2252
Transcript length (bp)2001
Coding sequence length (bp)1998
Protein length (aa) 666

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00172 Zn_clus Fungal Zn(2)-Cys(6) binuclear cluster domain 2.1E-06 41 74
PF04082 Fungal_trans Fungal specific transcription factor domain 1.9E-05 213 376

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|P28349|NIT4_NEUCR Nitrogen assimilation transcription factor nit-4 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=nit-4 PE=3 SV=2 15 501 1.0E-13

GO

GO Term Description Terminal node
GO:0006351 transcription, DNA-templated Yes
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific Yes
GO:0006355 regulation of transcription, DNA-templated Yes
GO:0008270 zinc ion binding Yes
GO:0003677 DNA binding Yes
GO:0003676 nucleic acid binding No
GO:0019219 regulation of nucleobase-containing compound metabolic process No
GO:0003674 molecular_function No
GO:0044237 cellular metabolic process No
GO:0043169 cation binding No
GO:0043167 ion binding No
GO:0008152 metabolic process No
GO:0006139 nucleobase-containing compound metabolic process No
GO:1901576 organic substance biosynthetic process No
GO:0010468 regulation of gene expression No
GO:0046872 metal ion binding No
GO:0046483 heterocycle metabolic process No
GO:0051171 regulation of nitrogen compound metabolic process No
GO:0065007 biological regulation No
GO:0090304 nucleic acid metabolic process No
GO:0044238 primary metabolic process No
GO:0031323 regulation of cellular metabolic process No
GO:0140110 transcription regulator activity No
GO:0050794 regulation of cellular process No
GO:0019222 regulation of metabolic process No
GO:0018130 heterocycle biosynthetic process No
GO:0060255 regulation of macromolecule metabolic process No
GO:0006725 cellular aromatic compound metabolic process No
GO:0008150 biological_process No
GO:1901360 organic cyclic compound metabolic process No
GO:0097159 organic cyclic compound binding No
GO:0009058 biosynthetic process No
GO:0044249 cellular biosynthetic process No
GO:0034641 cellular nitrogen compound metabolic process No
GO:0051252 regulation of RNA metabolic process No
GO:0031326 regulation of cellular biosynthetic process No
GO:0006807 nitrogen compound metabolic process No
GO:1901362 organic cyclic compound biosynthetic process No
GO:0010556 regulation of macromolecule biosynthetic process No
GO:0046914 transition metal ion binding No
GO:2001141 regulation of RNA biosynthetic process No
GO:1903506 regulation of nucleic acid-templated transcription No
GO:0003700 DNA-binding transcription factor activity No
GO:0050789 regulation of biological process No
GO:0019438 aromatic compound biosynthetic process No
GO:0034654 nucleobase-containing compound biosynthetic process No
GO:0016070 RNA metabolic process No
GO:0097659 nucleic acid-templated transcription No
GO:0009889 regulation of biosynthetic process No
GO:0009059 macromolecule biosynthetic process No
GO:0080090 regulation of primary metabolic process No
GO:1901363 heterocyclic compound binding No
GO:0044271 cellular nitrogen compound biosynthetic process No
GO:0032774 RNA biosynthetic process No
GO:0009987 cellular process No
GO:0043170 macromolecule metabolic process No
GO:0005488 binding No
GO:0071704 organic substance metabolic process No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 11 0.45

Transmembrane Domains

(None)

Transcription Factor Class

Transcription Factor Class
(based on PFAM domains)
Fungal Specific TF

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Click here for more information

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|8604
MNHSGRGRPLLPAPPKPQSVSSNSTSSRIVSKRASTRGKVACDPCRARKIACDCTHPVCHKCRKNGAECIYRPFQ
CRTALKRLLHERDHEFSLFLAQLKSLDDDEALHLIRRLHAAADVPSALAMAQGTLFSIERPLIHTLPLAKSGSEL
ELAALDPVMYPLLLPINHESPLLSVNQVAADQAAVQHDSRLHELRIGYWTAVPIKDSEAAQLLSLYLERDHACIP
LFDAGLFLDDLVNHKSTYCSALLVSSLLFVACQAHTANRTENPGMTLAFFNEAKRLWEAQKTTVTALNLVASQIL
SLGCLLQGNDKLSRHMASFGRTMAEKLGLLNNSADSPAALVFQKQSPSNIRFMSQIAWGTFVWFTLLVINYRDEP
ISLPPILPIPGETIDANSPSLPPYTGHTFPQLCTLFLIRHEIALASFSPGQASPEPVAMAFAQAIYHKLLSWSES
LPRLLLREDYNQNHVILLHTRFLCTVLDLFRPFCPHVAPEEYMTPLEYHPPAIYAASLKQLKHVLHSYCLLQLPS
HYSPFIGFSMTHVIAGMLNESRNTDWRTYLTIFFHCWTHLYSAYPLYGEMAQASLSMLLRHGWLSGHEAHELLSN
LRQNGQHQVDAVDMRPETSFVIDWNQAVTDTESARIATVARDFSHLTMFDELTINDDLMIEPIKDA
Coding >Ophio5|8604
ATGAATCACTCAGGTAGAGGTAGGCCTCTTCTGCCTGCGCCGCCCAAGCCACAATCCGTGAGCTCCAATAGCACC
TCGTCTCGAATCGTCAGCAAGAGGGCGAGCACTCGTGGCAAGGTGGCCTGCGATCCCTGCCGTGCACGAAAGATA
GCGTGTGACTGCACGCATCCCGTCTGTCACAAATGCAGAAAGAATGGCGCTGAGTGTATCTACCGTCCCTTTCAA
TGCCGTACGGCTCTGAAGCGGTTGCTACACGAGCGGGATCACGAGTTTAGCCTATTCCTGGCCCAGCTCAAGTCC
CTCGATGACGATGAGGCATTGCATCTCATCCGCCGTCTCCATGCCGCCGCCGATGTCCCGAGTGCCCTCGCCATG
GCCCAGGGCACCCTTTTCAGTATTGAGCGGCCCTTGATCCATACCCTGCCTTTGGCCAAGTCAGGGTCCGAGCTG
GAGCTTGCAGCCCTTGATCCTGTCATGTATCCCCTTCTGCTGCCCATCAACCACGAGTCGCCGTTGCTCTCGGTG
AATCAGGTAGCCGCCGACCAGGCCGCTGTTCAACATGACTCTCGCCTCCACGAGCTGCGGATTGGATATTGGACA
GCAGTGCCCATCAAAGACAGCGAGGCAGCCCAGCTACTCTCCCTGTACCTCGAACGAGACCACGCGTGCATTCCT
CTTTTCGACGCTGGCCTGTTCCTTGACGACCTTGTTAACCACAAGTCAACGTACTGCTCGGCTCTGCTCGTCAGT
TCCTTACTCTTCGTCGCCTGCCAAGCGCATACTGCCAACCGTACCGAAAACCCGGGCATGACACTTGCCTTCTTC
AACGAAGCGAAACGACTATGGGAGGCGCAGAAGACAACCGTGACAGCGCTCAATCTGGTTGCCAGTCAAATTCTG
AGTTTGGGATGTCTGCTGCAAGGCAACGACAAACTGAGCCGACACATGGCGTCCTTTGGCCGTACCATGGCTGAG
AAACTTGGCCTGCTAAACAATTCAGCCGACAGTCCAGCAGCATTGGTCTTTCAGAAGCAATCACCAAGCAATATC
AGGTTCATGTCCCAAATTGCGTGGGGTACCTTCGTCTGGTTCACTCTTCTTGTCATCAACTACCGCGATGAGCCA
ATATCGTTGCCGCCTATCTTACCCATCCCGGGCGAAACCATCGATGCCAACTCTCCTTCTCTCCCTCCGTACACG
GGTCATACCTTTCCACAGCTGTGTACATTGTTTCTGATACGCCACGAGATCGCCCTCGCATCCTTTTCTCCCGGC
CAAGCCTCACCCGAGCCAGTGGCAATGGCATTCGCTCAAGCAATATACCACAAGCTTCTGTCTTGGTCTGAAAGC
CTTCCCAGGCTACTTCTTCGCGAAGATTACAACCAAAACCATGTTATTCTTCTCCATACACGCTTTCTTTGCACC
GTTCTCGACCTGTTCCGCCCCTTTTGTCCGCACGTGGCGCCGGAAGAGTACATGACTCCGTTGGAATACCATCCT
CCAGCCATATATGCAGCATCTCTCAAACAGCTCAAACACGTCCTTCACTCATATTGTCTTTTGCAGCTCCCCTCA
CATTATTCACCCTTTATTGGCTTCTCCATGACGCATGTCATCGCTGGCATGCTCAACGAGTCTCGGAATACAGAC
TGGCGAACTTATCTCACCATCTTCTTCCACTGCTGGACACACCTATATTCCGCTTATCCTCTGTACGGAGAGATG
GCACAGGCCTCGCTCTCGATGCTTCTGCGTCATGGCTGGCTGTCGGGTCACGAAGCCCATGAGCTTCTCAGCAAT
CTTCGGCAGAATGGGCAACATCAAGTCGATGCCGTGGACATGCGTCCCGAAACGTCTTTTGTCATCGATTGGAAC
CAAGCCGTGACGGACACTGAGAGTGCCCGAATCGCGACAGTTGCGCGAGACTTCAGTCATTTGACCATGTTTGAT
GAACTGACGATCAACGACGACCTTATGATTGAGCCCATCAAAGATGCG
Transcript >Ophio5|8604
ATGAATCACTCAGGTAGAGGTAGGCCTCTTCTGCCTGCGCCGCCCAAGCCACAATCCGTGAGCTCCAATAGCACC
TCGTCTCGAATCGTCAGCAAGAGGGCGAGCACTCGTGGCAAGGTGGCCTGCGATCCCTGCCGTGCACGAAAGATA
GCGTGTGACTGCACGCATCCCGTCTGTCACAAATGCAGAAAGAATGGCGCTGAGTGTATCTACCGTCCCTTTCAA
TGCCGTACGGCTCTGAAGCGGTTGCTACACGAGCGGGATCACGAGTTTAGCCTATTCCTGGCCCAGCTCAAGTCC
CTCGATGACGATGAGGCATTGCATCTCATCCGCCGTCTCCATGCCGCCGCCGATGTCCCGAGTGCCCTCGCCATG
GCCCAGGGCACCCTTTTCAGTATTGAGCGGCCCTTGATCCATACCCTGCCTTTGGCCAAGTCAGGGTCCGAGCTG
GAGCTTGCAGCCCTTGATCCTGTCATGTATCCCCTTCTGCTGCCCATCAACCACGAGTCGCCGTTGCTCTCGGTG
AATCAGGTAGCCGCCGACCAGGCCGCTGTTCAACATGACTCTCGCCTCCACGAGCTGCGGATTGGATATTGGACA
GCAGTGCCCATCAAAGACAGCGAGGCAGCCCAGCTACTCTCCCTGTACCTCGAACGAGACCACGCGTGCATTCCT
CTTTTCGACGCTGGCCTGTTCCTTGACGACCTTGTTAACCACAAGTCAACGTACTGCTCGGCTCTGCTCGTCAGT
TCCTTACTCTTCGTCGCCTGCCAAGCGCATACTGCCAACCGTACCGAAAACCCGGGCATGACACTTGCCTTCTTC
AACGAAGCGAAACGACTATGGGAGGCGCAGAAGACAACCGTGACAGCGCTCAATCTGGTTGCCAGTCAAATTCTG
AGTTTGGGATGTCTGCTGCAAGGCAACGACAAACTGAGCCGACACATGGCGTCCTTTGGCCGTACCATGGCTGAG
AAACTTGGCCTGCTAAACAATTCAGCCGACAGTCCAGCAGCATTGGTCTTTCAGAAGCAATCACCAAGCAATATC
AGGTTCATGTCCCAAATTGCGTGGGGTACCTTCGTCTGGTTCACTCTTCTTGTCATCAACTACCGCGATGAGCCA
ATATCGTTGCCGCCTATCTTACCCATCCCGGGCGAAACCATCGATGCCAACTCTCCTTCTCTCCCTCCGTACACG
GGTCATACCTTTCCACAGCTGTGTACATTGTTTCTGATACGCCACGAGATCGCCCTCGCATCCTTTTCTCCCGGC
CAAGCCTCACCCGAGCCAGTGGCAATGGCATTCGCTCAAGCAATATACCACAAGCTTCTGTCTTGGTCTGAAAGC
CTTCCCAGGCTACTTCTTCGCGAAGATTACAACCAAAACCATGTTATTCTTCTCCATACACGCTTTCTTTGCACC
GTTCTCGACCTGTTCCGCCCCTTTTGTCCGCACGTGGCGCCGGAAGAGTACATGACTCCGTTGGAATACCATCCT
CCAGCCATATATGCAGCATCTCTCAAACAGCTCAAACACGTCCTTCACTCATATTGTCTTTTGCAGCTCCCCTCA
CATTATTCACCCTTTATTGGCTTCTCCATGACGCATGTCATCGCTGGCATGCTCAACGAGTCTCGGAATACAGAC
TGGCGAACTTATCTCACCATCTTCTTCCACTGCTGGACACACCTATATTCCGCTTATCCTCTGTACGGAGAGATG
GCACAGGCCTCGCTCTCGATGCTTCTGCGTCATGGCTGGCTGTCGGGTCACGAAGCCCATGAGCTTCTCAGCAAT
CTTCGGCAGAATGGGCAACATCAAGTCGATGCCGTGGACATGCGTCCCGAAACGTCTTTTGTCATCGATTGGAAC
CAAGCCGTGACGGACACTGAGAGTGCCCGAATCGCGACAGTTGCGCGAGACTTCAGTCATTTGACCATGTTTGAT
GAACTGACGATCAACGACGACCTTATGATTGAGCCCATCAAAGATGCGTAA
Gene >Ophio5|8604
ATGAATCACTCAGGTAGAGGTAGGCCTCTTCTGCCTGCGCCGCCCAAGCCACAATCCGTGAGCTCCAATAGCACC
TCGTCTCGAATCGTCAGCAAGAGGGCGAGCACTCGTGGCAAGGTGGCCTGCGATCCCTGCCGTGCACGAAAGATA
GCGGTAAGGTTGATATCAGAGATTGTCGCCTCCGCTTCCGCTTCCTTCGTCATCGGCTGATGCATGCAAAGTGTG
ACTGCACGCATCCCGTCTGTCACAAATGCAGAAAGAATGGCGCTGAGTGTATCTACCGTCCCTTTCAATGCCGTA
CGGCTCTGAAGCGGTTGCTACACGAGCGGGATCACGAGTTTAGCCTATTCCTGGCCCAGCTCAAGTCCCTCGATG
ACGATGAGGCATTGCATCTCATCCGCCGTCTCCATGCCGCCGCCGATGTCCCGAGTGCCCTCGCCATGGCCCAGG
GCACCCTTTTCAGTATTGAGCGGCCCTTGATCCATACCCTGCCTTTGGCCAAGTCAGGGTCCGAGCTGGAGCTTG
CAGCCCTTGATCCTGTCATGTATCCCCTTCTGCTGCCCATCAACCACGAGTCGCCGTTGCTCTCGGTGAATCAGG
TAGCCGCCGACCAGGCCGCTGTTCAACATGACTCTCGCCTCCACGAGCTGCGGATTGGATATTGGACAGCAGTGC
CCATCAAAGACAGCGAGGCAGCCCAGCTACTCTCCCTGTACCTCGAACGAGACCACGCGTGCATTCCTCTTTTCG
ACGCTGGCCTGTTCCTTGACGACCTTGTTAACCACAAGTCAACGTACTGCTCGGCTCTGCTCGTCAGTTCCTTAC
TCTTCGTCGCCTGCGTAAGTGCCACTTCCCATGAGATTGACAACAACCTATTTTATTTTTCTGAATGGGCATGCA
ATGCAGCAAGCGCATACTGCCAACCGTACCGAAAACCCGGGCATGACACTTGCCTTCTTCAACGAAGCGAAACGA
CTATGGGAGGCGCAGAAGACAACCGTGACAGCGCTCAATCTGGTTGCCAGTCAAATTCTGAGTTTGGGATGTCTG
CTGCAAGGCAACGACAAACTGAGCCGACACATGGCGTCCTTTGGCCGTACCATGGCTGAGAAACTTGGCCTGCTA
AACAATTCAGCCGACAGTCCAGCAGCATTGGTCTTTCAGAAGCAATCACCAAGCAATATCAGGTTCATGTCCCAA
ATTGCGTGGGGTACCTTCGTCTGGTTCACGTCAGTAAGTACTCATCCTATCCAAGTTTCACTGCTTAACACCACA
CCAATTGTTGGGGCAGTCTTCTTGTCATCAACTACCGCGATGAGCCAATATCGTTGCCGCCTATCTTACCCATCC
CGGGCGAAACCATCGATGCCAACTCTCCTTCTCTCCCTCCGTACACGGGTCATACCTTTCCACAGCTGTGTACAT
TGTTTCTGATACGCCACGAGATCGCCCTCGCATCCTTTTCTCCCGGCCAAGCCTCACCCGAGCCAGTGGCAATGG
CATTCGCTCAAGCAATATACCACAAGCTTCTGTCTTGGTCTGAAAGCCTTCCCAGGCTACTTCTTCGCGAAGATT
ACAACCAAAACCATGTTATTCTTCTCCAGTATGAGTTGTTGCGTCGAGGGCTGCCAAGCGCAACCGCTGACTCGT
CTCGCAGTACACGCTTTCTTTGCACCGTTCTCGACCTGTTCCGCCCCTTTTGTCCGCACGTGGCGCCGGAAGAGT
ACATGACTCCGTTGGAATACCATCCTCCAGCCATATATGCAGCATCTCTCAAACAGCTCAAACACGTCCTTCACT
CATATTGTCTTTTGCAGCTCCCCTCACATTATTCACCCTTTATTGGCTTCTCCATGACGCATGTCATCGCTGGCA
TGCTCAACGAGTCTCGGAATACAGACTGGCGAACTTATCTCACCATCTTCTTCCACTGCTGGACACACCTATATT
CCGCTTATCCTCTGTACGGAGAGATGGCACAGGCCTCGCTCTCGATGCTTCTGCGTCATGGCTGGCTGTCGGGTC
ACGAAGCCCATGAGCTTCTCAGCAATCTTCGGCAGAATGGGCAACATCAAGTCGATGCCGTGGACATGCGTCCCG
AAACGTCTTTTGTCATCGATTGGAACCAAGCCGTGACGGACACTGAGAGTGCCCGAATCGCGACAGTTGCGCGAG
ACTTCAGTCATTTGACCATGTTTGATGAACTGACGATCAACGACGACCTTATGATTGAGCCCATCAAAGATGCGT
AA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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