Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|8584
Gene name
Locationscaffold_980:364..3132
Strand+
Gene length (bp)2768
Transcript length (bp)2181
Coding sequence length (bp)2178
Protein length (aa) 726

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF04082 Fungal_trans Fungal specific transcription factor domain 4.3E-12 231 440
PF00172 Zn_clus Fungal Zn(2)-Cys(6) binuclear cluster domain 6.3E-09 17 52

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|O59741|YN25_SCHPO Uncharacterized transcriptional regulatory protein C530.05 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC530.05 PE=3 SV=2 8 497 1.0E-12
sp|O14130|YF54_SCHPO Uncharacterized transcriptional regulatory protein C3C7.04 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC3C7.04 PE=3 SV=1 16 518 8.0E-11
sp|Q9UTN0|YII3_SCHPO Uncharacterized transcriptional regulatory protein C139.03 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC139.03 PE=3 SV=1 13 354 3.0E-08
sp|P11638|QA1F_NEUCR Quinic acid utilization activator OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=qa-1f PE=3 SV=2 9 68 2.0E-06
sp|P39113|CAT8_YEAST Regulatory protein CAT8 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CAT8 PE=1 SV=2 13 109 6.0E-06

GO

GO Term Description Terminal node
GO:0006351 transcription, DNA-templated Yes
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific Yes
GO:0006355 regulation of transcription, DNA-templated Yes
GO:0008270 zinc ion binding Yes
GO:0003677 DNA binding Yes
GO:0003676 nucleic acid binding No
GO:0019219 regulation of nucleobase-containing compound metabolic process No
GO:0003674 molecular_function No
GO:0044237 cellular metabolic process No
GO:0043169 cation binding No
GO:0043167 ion binding No
GO:0008152 metabolic process No
GO:0006139 nucleobase-containing compound metabolic process No
GO:1901576 organic substance biosynthetic process No
GO:0010468 regulation of gene expression No
GO:0046872 metal ion binding No
GO:0046483 heterocycle metabolic process No
GO:0051171 regulation of nitrogen compound metabolic process No
GO:0065007 biological regulation No
GO:0090304 nucleic acid metabolic process No
GO:0044238 primary metabolic process No
GO:0031323 regulation of cellular metabolic process No
GO:0140110 transcription regulator activity No
GO:0050794 regulation of cellular process No
GO:0019222 regulation of metabolic process No
GO:0018130 heterocycle biosynthetic process No
GO:0060255 regulation of macromolecule metabolic process No
GO:0006725 cellular aromatic compound metabolic process No
GO:0008150 biological_process No
GO:1901360 organic cyclic compound metabolic process No
GO:0003700 DNA-binding transcription factor activity No
GO:0009058 biosynthetic process No
GO:0044249 cellular biosynthetic process No
GO:0034641 cellular nitrogen compound metabolic process No
GO:0051252 regulation of RNA metabolic process No
GO:0031326 regulation of cellular biosynthetic process No
GO:0006807 nitrogen compound metabolic process No
GO:1901362 organic cyclic compound biosynthetic process No
GO:0010556 regulation of macromolecule biosynthetic process No
GO:0046914 transition metal ion binding No
GO:2001141 regulation of RNA biosynthetic process No
GO:1903506 regulation of nucleic acid-templated transcription No
GO:0097159 organic cyclic compound binding No
GO:0034654 nucleobase-containing compound biosynthetic process No
GO:0019438 aromatic compound biosynthetic process No
GO:0050789 regulation of biological process No
GO:0016070 RNA metabolic process No
GO:0097659 nucleic acid-templated transcription No
GO:0009889 regulation of biosynthetic process No
GO:0009059 macromolecule biosynthetic process No
GO:0080090 regulation of primary metabolic process No
GO:1901363 heterocyclic compound binding No
GO:0044271 cellular nitrogen compound biosynthetic process No
GO:0032774 RNA biosynthetic process No
GO:0009987 cellular process No
GO:0043170 macromolecule metabolic process No
GO:0005488 binding No
GO:0071704 organic substance metabolic process No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 11 0.45

Transmembrane Domains

(None)

Transcription Factor Class

Transcription Factor Class
(based on PFAM domains)
Fungal Specific TF

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
SC16a Pure fungal culture 41.43 22.43 60.43
CcL In ants, during behavior modification 37.62 20.66 54.58
CcD In ants, recently dead 38.00 20.89 55.11

Differential expression

Label1 Label2 Q-value Significant difference
SC16a CcL 0.719504 no
SC16a CcD 0.744676 no
CcL CcD 0.971186 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|8584
MDRTDRPLTKRLRASLACNGCRQTKSKCDGARPMCERCTRNGASCVYSQSGQDKRMQRQDERRANLALMSRVKEL
EARLAAVTSSSPQLSSIIEEPNCQRGSISLSDGSESTADAIATGLFDHPPANDIGYFGSSSNHAFFWSLSTSIEN
ISRRDARGQDLTRHMPPVAPLPAPVPPPPDRPGDDSFPELKVAVAWVMRFFYTVGAVLLYVDESDVLAELDAIDA
RGRGWQSSSPSTQALLSIIFAHALNTLEERSPEPFYRRALGLLDNKTAHVPTISALQALLLLSRFQQNTQRSMES
WAPHYLAVRVSYQLGIHAPASYKQLGIHDKELRSRLWFAVVNQDRILTAGLARPCLIPLQHVRTEIAEFLDAARP
SKSTEMNCSRESVTYFRRLITLHEILGAAVESIYSSNINSSSRLPLGDLLAKTMDLVWKLDQWREKTDPAGAVLT
GADFSQWPTAAFETNRFNVLLTIFHYRAQMLMHGSLLMRVLERATGSSDQDASSAAVHDASLSLLSNYLRDLQEW
LRFIDGILNHERSFLPSNAVWWTSNYMMLSTCIHAFAFWLLTDNIKSSSATLGMHSADAEVFLRSSLDTLKRVGG
SSIMSRKAHRCLERYLHIIKSIRPARRGSVASDAGPASAPASAHGSSFGGDQTEAAALTPLTPVALVTSQWNSSG
DGGGGGGLGPGPDVYGGPMDVFGGMGQVDFMYAGFLGIERAISDYDAAGFI
Coding >Ophio5|8584
ATGGATCGCACGGACCGGCCGCTGACGAAGCGGCTCCGGGCCTCGTTGGCCTGCAACGGGTGCCGCCAAACCAAG
TCCAAGTGCGATGGAGCCCGGCCGATGTGTGAGCGCTGCACCCGCAATGGCGCCAGCTGTGTGTATTCGCAGAGC
GGACAGGACAAGCGAATGCAGCGTCAGGACGAGAGAAGAGCCAACCTGGCGCTGATGAGTAGGGTCAAGGAGCTT
GAGGCTCGCCTCGCTGCCGTCACCTCTTCGTCGCCCCAGCTGTCGAGTATAATCGAAGAGCCCAACTGCCAACGG
GGTTCCATCTCCCTTTCGGACGGCTCCGAGTCGACAGCCGATGCCATCGCGACGGGGTTGTTTGACCATCCTCCC
GCCAACGATATCGGCTACTTTGGCTCAAGCTCCAATCACGCCTTCTTCTGGTCCCTCTCCACCAGCATCGAAAAC
ATCAGCCGTCGCGATGCCCGTGGCCAGGACCTCACTCGTCACATGCCGCCCGTCGCGCCGCTGCCCGCGCCTGTC
CCTCCGCCTCCGGACCGCCCTGGCGACGACTCGTTTCCTGAGCTCAAGGTGGCTGTCGCCTGGGTCATGCGCTTC
TTCTATACCGTCGGCGCCGTCTTGCTGTACGTCGACGAGTCGGATGTGCTGGCCGAACTTGACGCTATCGACGCA
CGCGGCCGAGGATGGCAGTCTTCGAGCCCGTCGACGCAGGCTCTGCTCAGCATCATATTCGCCCATGCTTTGAAT
ACGCTCGAGGAGCGTTCACCTGAGCCGTTTTATCGCCGTGCCTTGGGCTTGTTGGATAACAAAACGGCTCATGTG
CCGACCATCTCTGCCCTGCAGGCATTACTTCTCCTTTCCAGATTCCAACAAAACACCCAGAGGTCCATGGAGAGT
TGGGCGCCGCATTACCTCGCCGTCAGGGTGTCGTATCAGCTCGGCATCCACGCGCCGGCCTCGTACAAGCAGCTC
GGCATCCACGATAAAGAGTTGCGCTCGCGGCTTTGGTTTGCCGTCGTGAATCAGGACAGGATCTTGACGGCCGGC
TTGGCCCGCCCCTGTCTCATCCCTTTACAGCACGTCCGGACCGAAATCGCCGAGTTTCTCGACGCCGCGCGGCCT
AGCAAGAGTACGGAGATGAACTGCTCCAGGGAGAGTGTCACCTACTTCCGCCGCCTCATAACTCTACACGAGATT
CTAGGCGCCGCCGTCGAATCCATCTACAGCTCCAACATCAACTCATCCAGCCGCCTTCCGCTGGGAGACCTCCTA
GCCAAGACCATGGATCTCGTCTGGAAGCTCGACCAGTGGCGGGAGAAGACGGATCCCGCCGGAGCCGTCCTGACC
GGCGCCGACTTTAGCCAGTGGCCCACGGCCGCGTTTGAGACGAACCGGTTCAACGTCCTCCTCACCATCTTCCAC
TATCGGGCCCAGATGCTGATGCACGGGTCCCTACTGATGAGGGTCCTCGAGCGGGCCACGGGGTCCTCGGATCAG
GACGCCTCCTCGGCCGCTGTTCATGACGCGTCGTTGTCTCTGCTGAGCAACTACCTGCGGGACCTTCAGGAGTGG
CTGCGGTTCATCGACGGCATCCTGAATCATGAGCGGTCGTTTCTTCCTAGCAACGCCGTCTGGTGGACGAGCAAT
TACATGATGCTCTCCACCTGCATACACGCCTTTGCCTTTTGGCTGCTGACGGACAACATCAAGTCCAGCTCGGCA
ACGCTAGGCATGCACAGCGCCGACGCCGAGGTATTCCTACGGTCCAGCCTCGACACGCTGAAACGCGTCGGGGGC
TCGAGCATCATGAGTCGCAAGGCCCATCGCTGCCTGGAGCGCTACCTGCACATCATCAAGAGCATCCGCCCCGCA
AGGCGCGGCTCGGTCGCTTCGGACGCCGGGCCGGCATCCGCGCCGGCCTCCGCGCACGGCAGCAGTTTCGGAGGC
GACCAGACCGAGGCGGCGGCCCTGACGCCCCTGACGCCCGTCGCGCTGGTGACGTCTCAGTGGAACTCGTCGGGA
GACGGAGGCGGCGGCGGCGGCCTCGGGCCCGGACCCGACGTGTATGGGGGACCGATGGATGTGTTTGGGGGAATG
GGTCAGGTCGATTTCATGTATGCGGGCTTTTTGGGTATCGAACGGGCCATCAGCGACTATGATGCCGCCGGCTTT
ATC
Transcript >Ophio5|8584
ATGGATCGCACGGACCGGCCGCTGACGAAGCGGCTCCGGGCCTCGTTGGCCTGCAACGGGTGCCGCCAAACCAAG
TCCAAGTGCGATGGAGCCCGGCCGATGTGTGAGCGCTGCACCCGCAATGGCGCCAGCTGTGTGTATTCGCAGAGC
GGACAGGACAAGCGAATGCAGCGTCAGGACGAGAGAAGAGCCAACCTGGCGCTGATGAGTAGGGTCAAGGAGCTT
GAGGCTCGCCTCGCTGCCGTCACCTCTTCGTCGCCCCAGCTGTCGAGTATAATCGAAGAGCCCAACTGCCAACGG
GGTTCCATCTCCCTTTCGGACGGCTCCGAGTCGACAGCCGATGCCATCGCGACGGGGTTGTTTGACCATCCTCCC
GCCAACGATATCGGCTACTTTGGCTCAAGCTCCAATCACGCCTTCTTCTGGTCCCTCTCCACCAGCATCGAAAAC
ATCAGCCGTCGCGATGCCCGTGGCCAGGACCTCACTCGTCACATGCCGCCCGTCGCGCCGCTGCCCGCGCCTGTC
CCTCCGCCTCCGGACCGCCCTGGCGACGACTCGTTTCCTGAGCTCAAGGTGGCTGTCGCCTGGGTCATGCGCTTC
TTCTATACCGTCGGCGCCGTCTTGCTGTACGTCGACGAGTCGGATGTGCTGGCCGAACTTGACGCTATCGACGCA
CGCGGCCGAGGATGGCAGTCTTCGAGCCCGTCGACGCAGGCTCTGCTCAGCATCATATTCGCCCATGCTTTGAAT
ACGCTCGAGGAGCGTTCACCTGAGCCGTTTTATCGCCGTGCCTTGGGCTTGTTGGATAACAAAACGGCTCATGTG
CCGACCATCTCTGCCCTGCAGGCATTACTTCTCCTTTCCAGATTCCAACAAAACACCCAGAGGTCCATGGAGAGT
TGGGCGCCGCATTACCTCGCCGTCAGGGTGTCGTATCAGCTCGGCATCCACGCGCCGGCCTCGTACAAGCAGCTC
GGCATCCACGATAAAGAGTTGCGCTCGCGGCTTTGGTTTGCCGTCGTGAATCAGGACAGGATCTTGACGGCCGGC
TTGGCCCGCCCCTGTCTCATCCCTTTACAGCACGTCCGGACCGAAATCGCCGAGTTTCTCGACGCCGCGCGGCCT
AGCAAGAGTACGGAGATGAACTGCTCCAGGGAGAGTGTCACCTACTTCCGCCGCCTCATAACTCTACACGAGATT
CTAGGCGCCGCCGTCGAATCCATCTACAGCTCCAACATCAACTCATCCAGCCGCCTTCCGCTGGGAGACCTCCTA
GCCAAGACCATGGATCTCGTCTGGAAGCTCGACCAGTGGCGGGAGAAGACGGATCCCGCCGGAGCCGTCCTGACC
GGCGCCGACTTTAGCCAGTGGCCCACGGCCGCGTTTGAGACGAACCGGTTCAACGTCCTCCTCACCATCTTCCAC
TATCGGGCCCAGATGCTGATGCACGGGTCCCTACTGATGAGGGTCCTCGAGCGGGCCACGGGGTCCTCGGATCAG
GACGCCTCCTCGGCCGCTGTTCATGACGCGTCGTTGTCTCTGCTGAGCAACTACCTGCGGGACCTTCAGGAGTGG
CTGCGGTTCATCGACGGCATCCTGAATCATGAGCGGTCGTTTCTTCCTAGCAACGCCGTCTGGTGGACGAGCAAT
TACATGATGCTCTCCACCTGCATACACGCCTTTGCCTTTTGGCTGCTGACGGACAACATCAAGTCCAGCTCGGCA
ACGCTAGGCATGCACAGCGCCGACGCCGAGGTATTCCTACGGTCCAGCCTCGACACGCTGAAACGCGTCGGGGGC
TCGAGCATCATGAGTCGCAAGGCCCATCGCTGCCTGGAGCGCTACCTGCACATCATCAAGAGCATCCGCCCCGCA
AGGCGCGGCTCGGTCGCTTCGGACGCCGGGCCGGCATCCGCGCCGGCCTCCGCGCACGGCAGCAGTTTCGGAGGC
GACCAGACCGAGGCGGCGGCCCTGACGCCCCTGACGCCCGTCGCGCTGGTGACGTCTCAGTGGAACTCGTCGGGA
GACGGAGGCGGCGGCGGCGGCCTCGGGCCCGGACCCGACGTGTATGGGGGACCGATGGATGTGTTTGGGGGAATG
GGTCAGGTCGATTTCATGTATGCGGGCTTTTTGGGTATCGAACGGGCCATCAGCGACTATGATGCCGCCGGCTTT
ATCTAG
Gene >Ophio5|8584
ATGGATCGCACGGACCGGCCGCTGACGAAGCGGCTCCGGGCCTCGTTGGCCTGCAACGGGTGCCGCCAAACCAAG
TCCAAGGTGAAGGGAGCCCCATATTGATACATCCTTTGATGATGATGGGCTGTCGAGCTGACAGCTTCCTTTTCC
TCTTCCATTTCAGTGCGATGGAGCCCGGCCGATGTGTGAGCGCTGCACCCGCAATGGCGCCAGCTGTGTGTATTC
GCAGAGCGGACAGGACAAGCGAATGCAGCGTCAGGACGAGAGAAGGTTGCTGAATTTTCCCTTTCCTGCTTGAAT
TTGCTGTCAATAGGCCGCTGACGCTTCTTCTCCTCTTCTAGAGCCAACCTGGCGCTGATGAGTAGGGTCAAGGAG
CTTGAGGCTCGCCTCGCTGCCGTCACCTCTTCGTCGCCCCAGCTGTCGAGTATAATCGAAGAGCCCAACTGCCAA
CGGGGTTCCATCTCCCTTTCGGACGGCTCCGAGTCGACAGCCGATGCCATCGCGACGGGGTTGTTTGACCATCCT
CCCGCCAACGATATCGGCTACTTTGGTGAGCCTTGTCGTCCTTTTTTTTTTTTGGTCCTCGTCCTCGTCATCGTC
CTCTACGAGGTTGTCCAAGACCGTCAGCTGAGGCCTTCTTCTCGTTTTTTTCCCCCCCAGGCTCAAGCTCCAATC
ACGCCTTCTTCTGGTCCCTCTCCACCAGCATCGAAAACATCAGCCGTCGCGATGCCCGTGGCCAGGACCTCACTC
GTCACATGCCGCCCGTCGCGCCGCTGCCCGCGCCTGTCCCTCCGCCTCCGGACCGCCCTGGCGACGACTCGTTTC
CTGAGCTCAAGGTGGCTGTCGCCTGGGTCATGCGCTTCTTCTATACCGTCGGCGCCGTCTTGCTGTACGTCGACG
AGTCGGATGTGCTGGCCGAACTTGACGCTATCGACGCACGCGGCCGAGGATGGCAGTCTTCGAGCCCGTCGACGC
AGGCTCTGCTCAGCATCATATTCGCCCATGCTTTGAATACGCTCGAGGAGCGTTCACCTGAGCCGTTTTATCGCC
GTGCCTTGGGCTTGTTGGATAACAAAACGGCTCATGTGCCGACCATCTCTGCCCGTACGACTTCCCCTGATGCGC
CACCTTGTTTTTTTGTCCTCGGCCCCCCCCGGCTTATGATGAGCAGTGCAGGCATTACTTCTCCTTTCCAGATTC
CAACAAAACACCCAGAGGTCCATGGAGAGTTGGGCGCCGCATTACCTCGCCGTCAGGGTGTCGTATCAGCTCGGC
ATCCACGCGCCGGCCTCGTACAAGCAGCTCGGCATCCACGATAAAGAGTTGCGCTCGCGGCTTTGGTTTGCCGTC
GTGAATCAGGACAGGTGCGCGAGAGAGAATCAAGTCTACATGGAACGATTTGCTGACATGGCCACAAGGATCTTG
ACGGCCGGCTTGGCCCGCCCCTGTCTCATCCCTTTACAGCACGTCCGGACCGAAATCGCCGAGTTTCTCGACGCC
GCGCGGCCTAGCAAGAGTACGGAGATGAACTGCTCCAGGGAGAGTGTCACCTACTTCCGCCGCCTCATGTCAGTC
CGCCTCGTCTGTCCGCTAGATCGTAACCCTAACGCGAATGAATGCAGAACTCTACACGAGATTCTAGGCGCCGCC
GTCGAATCCATCTACAGCTCCAACATCAACTCATCCAGCCGCCTTCCGCTGGGAGACCTCCTAGCCAAGACCATG
GATCTCGTCTGGAAGCTCGACCAGTGGCGGGAGAAGACGGATCCCGCCGGAGCCGTCCTGACCGGCGCCGACTTT
AGCCAGTGGCCCACGGCCGCGTTTGAGACGAACCGGTTCAACGTCCTCCTCACCATCTTCCACTATCGGGCCCAG
ATGCTGATGCACGGGTCCCTACTGATGAGGGTCCTCGAGCGGGCCACGGGGTCCTCGGATCAGGACGCCTCCTCG
GCCGCTGTTCATGACGCGTCGTTGTCTCTGCTGAGCAACTACCTGCGGGACCTTCAGGAGTGGCTGCGGTTCATC
GACGGCATCCTGAATCATGAGCGGTCGTTTCTTCCTAGCAACGCCGTCTGGTGGACGAGCAATTACATGAGTGAG
TTGGCCTCGTTCCCTCTACTCCAAACCTGCAACCTCCCCCCTTGTCGTTCTCTCTCCCTCTCTCTCTCTCTCCCT
CTCTCTCTTTGTGTGTGTGTGTGTGTGTGTATGTGTGAGCGAGTGAGTGTGTGCTGACAGCCGACCAAGTGCTCT
CCACCTGCATACACGCCTTTGCCTTTTGGCTGCTGACGGACAACATCAAGTCCAGCTCGGCAACGCTAGGCATGC
ACAGCGCCGACGCCGAGGTATTCCTACGGTCCAGCCTCGACACGCTGAAACGCGTCGGGGGCTCGAGCATCATGA
GTCGCAAGGCCCATCGCTGCCTGGAGCGCTACCTGCACATCATCAAGAGCATCCGCCCCGCAAGGCGCGGCTCGG
TCGCTTCGGACGCCGGGCCGGCATCCGCGCCGGCCTCCGCGCACGGCAGCAGTTTCGGAGGCGACCAGACCGAGG
CGGCGGCCCTGACGCCCCTGACGCCCGTCGCGCTGGTGACGTCTCAGTGGAACTCGTCGGGAGACGGAGGCGGCG
GCGGCGGCCTCGGGCCCGGACCCGACGTGTATGGGGGACCGATGGATGTGTTTGGGGGAATGGGTCAGGTCGATT
TCATGTATGCGGGCTTTTTGGGTATCGAACGGGCCATCAGCGACTATGATGCCGCCGGCTTTATCTAG

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