© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|8556 |
| Gene name | |
| Location | scaffold_97:44349..46158 |
| Strand | - |
| Gene length (bp) | 1809 |
| Transcript length (bp) | 1668 |
| Coding sequence length (bp) | 1665 |
| Protein length (aa) | 555 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04082 | Fungal_trans | Fungal specific transcription factor domain | 1.1E-10 | 103 | 232 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O59741|YN25_SCHPO | Uncharacterized transcriptional regulatory protein C530.05 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC530.05 PE=3 SV=2 | 146 | 291 | 1.0E-08 |
| sp|O59744|YN28_SCHPO | Uncharacterized transcriptional regulatory protein C530.08 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC530.08 PE=3 SV=1 | 133 | 357 | 1.0E-07 |
| sp|P87000|ACU15_NEUCR | Transcriptional activator protein acu-15 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=acu-15 PE=1 SV=2 | 44 | 375 | 4.0E-07 |
| sp|O14130|YF54_SCHPO | Uncharacterized transcriptional regulatory protein C3C7.04 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC3C7.04 PE=3 SV=1 | 199 | 422 | 4.0E-07 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006351 | transcription, DNA-templated | Yes |
| GO:0008270 | zinc ion binding | Yes |
| GO:0003677 | DNA binding | Yes |
| GO:0046872 | metal ion binding | No |
| GO:0003674 | molecular_function | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0043169 | cation binding | No |
| GO:0043167 | ion binding | No |
| GO:0008152 | metabolic process | No |
| GO:0006139 | nucleobase-containing compound metabolic process | No |
| GO:1901576 | organic substance biosynthetic process | No |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0046483 | heterocycle metabolic process | No |
| GO:0003676 | nucleic acid binding | No |
| GO:0090304 | nucleic acid metabolic process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0018130 | heterocycle biosynthetic process | No |
| GO:0006725 | cellular aromatic compound metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0019438 | aromatic compound biosynthetic process | No |
| GO:0016070 | RNA metabolic process | No |
| GO:0009058 | biosynthetic process | No |
| GO:0044249 | cellular biosynthetic process | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:1901362 | organic cyclic compound biosynthetic process | No |
| GO:0046914 | transition metal ion binding | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0034654 | nucleobase-containing compound biosynthetic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0097659 | nucleic acid-templated transcription | No |
| GO:0009059 | macromolecule biosynthetic process | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0044271 | cellular nitrogen compound biosynthetic process | No |
| GO:0032774 | RNA biosynthetic process | No |
| GO:0009987 | cellular process | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0005488 | binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 40 | 0.45 |
| Transcription Factor Class (based on PFAM domains) |
|---|
| Fungal Specific TF |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 158.97 | 80.71 | 237.23 |
| CcL | In ants, during behavior modification | 179.23 | 83.54 | 274.92 |
| CcD | In ants, recently dead | 139.78 | 71.30 | 208.26 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.678167 | no |
| SC16a | CcD | 0.647560 | no |
| CcL | CcD | 0.351992 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|8556 MGYRCVDDVSDQEQQSSEIAAAAAPAMDAPCDPLFDFDKDEIVRLCQFHQDEVGIMYPVLDMHAVMAHARNLADM LAEARSQRRPLEAINDDKTLQLKIVMCCALVVEQHGHSEEATRLYESMDAVLNRKLMAEASDVASLPLFCLIAGY RFLSSEEILAWRVMGHVVRLCVELGIHQKRGLMGISDEAERINALNSFWVAYVLDRRWGFATGLPFTLQDDEIDP QLPFPDQHPFLVAMITYSRLGAKVWRQVSHFGPVLARELRQEEIEDLDREILEWYETVPEDVKVRSWDKDKSMTT YDLRRLRIWIYLRFNQLRIWLYTPILHSATSIMSNPRQAQRVVDLAKDTIQYLHHLNNTTNVYRNGQVFYHQFLA SSIAVVFLASVHAPVRFSALCRQEFYVALELVKDLSSKSWVSKRLWRTIKSLKDVAPRVGLSPDIETRSAIALHM TTFPSLGMMSPPQQQQQQQQQQQQQQQQQQQHQHQHQQQQPEQNPDSPWLDNGKELQTELSKIFEDYVGTSAGHG STLALSSSPGAGGDAFSTSGTLFQDLREMF |
| Coding | >Ophio5|8556 ATGGGCTATCGTTGTGTCGACGACGTCAGCGACCAGGAACAGCAATCGAGCGAAATCGCCGCCGCCGCCGCCCCT GCCATGGACGCGCCTTGCGATCCGCTCTTCGATTTCGACAAGGACGAGATTGTTCGCCTTTGCCAATTCCACCAG GACGAGGTCGGCATCATGTATCCCGTCCTCGACATGCACGCCGTCATGGCCCACGCCAGGAACTTAGCCGACATG CTGGCCGAGGCCCGCAGTCAGCGGCGCCCGCTCGAGGCCATCAACGACGACAAGACGCTGCAACTCAAGATAGTC ATGTGCTGTGCCCTCGTCGTCGAGCAGCACGGTCACAGCGAAGAGGCGACTCGCCTGTACGAGAGCATGGACGCC GTTCTCAACCGCAAGCTCATGGCCGAAGCCAGTGACGTGGCCAGCCTGCCTCTGTTTTGCCTCATTGCCGGCTAT CGCTTCCTGTCGAGCGAGGAGATACTCGCGTGGCGCGTCATGGGCCACGTCGTCCGACTTTGCGTTGAGCTGGGC ATCCACCAGAAGAGGGGCTTGATGGGCATCTCCGACGAGGCGGAGAGGATCAATGCCCTCAACAGCTTCTGGGTC GCCTACGTCCTGGACCGGCGGTGGGGTTTCGCCACCGGCCTCCCCTTTACTCTGCAGGACGACGAGATCGACCCC CAGCTACCGTTTCCGGACCAACATCCCTTCCTCGTTGCCATGATAACGTATTCTCGGCTAGGCGCCAAAGTCTGG CGGCAGGTGTCGCACTTCGGGCCCGTGCTGGCGCGCGAACTGCGACAGGAGGAGATTGAGGACCTTGATCGCGAG ATTCTGGAGTGGTACGAGACGGTGCCCGAGGATGTCAAGGTGCGGAGCTGGGACAAGGACAAGTCGATGACGACG TATGATCTGCGCCGGCTGAGGATCTGGATCTATCTGAGGTTCAACCAGCTCCGCATATGGTTGTACACGCCCATT CTGCACAGCGCGACGAGCATCATGTCGAACCCGCGACAAGCTCAGCGCGTCGTCGACCTCGCCAAGGACACGATC CAGTACCTGCACCACCTCAACAACACGACGAACGTGTACCGTAACGGCCAGGTCTTCTACCACCAGTTCCTAGCG TCGTCCATCGCCGTCGTCTTCCTGGCGTCGGTGCATGCGCCCGTACGGTTCAGCGCCCTCTGCCGCCAAGAGTTT TACGTGGCCCTCGAACTGGTCAAGGATTTGTCCTCCAAGAGCTGGGTCTCGAAGCGGCTGTGGCGCACCATCAAA TCTCTAAAGGACGTGGCGCCGCGCGTCGGGCTCAGTCCGGACATTGAAACCCGCTCAGCCATCGCGCTGCACATG ACGACGTTTCCGAGCCTGGGCATGATGAGTCCTCCGCAACAGCAGCAGCAGCAGCAACAGCAGCAGCAGCAGCAA CAACAACAACAACAACAGCACCAGCATCAGCACCAACAACAACAGCCAGAGCAAAATCCGGATTCTCCGTGGCTA GACAACGGCAAAGAGCTCCAGACGGAGCTGTCCAAGATCTTTGAAGACTATGTCGGCACCAGCGCCGGCCATGGC TCGACGCTCGCGTTGTCCTCTTCGCCGGGCGCCGGTGGCGACGCCTTTTCCACCAGCGGAACCCTATTCCAGGAT CTGCGCGAGATGTTT |
| Transcript | >Ophio5|8556 ATGGGCTATCGTTGTGTCGACGACGTCAGCGACCAGGAACAGCAATCGAGCGAAATCGCCGCCGCCGCCGCCCCT GCCATGGACGCGCCTTGCGATCCGCTCTTCGATTTCGACAAGGACGAGATTGTTCGCCTTTGCCAATTCCACCAG GACGAGGTCGGCATCATGTATCCCGTCCTCGACATGCACGCCGTCATGGCCCACGCCAGGAACTTAGCCGACATG CTGGCCGAGGCCCGCAGTCAGCGGCGCCCGCTCGAGGCCATCAACGACGACAAGACGCTGCAACTCAAGATAGTC ATGTGCTGTGCCCTCGTCGTCGAGCAGCACGGTCACAGCGAAGAGGCGACTCGCCTGTACGAGAGCATGGACGCC GTTCTCAACCGCAAGCTCATGGCCGAAGCCAGTGACGTGGCCAGCCTGCCTCTGTTTTGCCTCATTGCCGGCTAT CGCTTCCTGTCGAGCGAGGAGATACTCGCGTGGCGCGTCATGGGCCACGTCGTCCGACTTTGCGTTGAGCTGGGC ATCCACCAGAAGAGGGGCTTGATGGGCATCTCCGACGAGGCGGAGAGGATCAATGCCCTCAACAGCTTCTGGGTC GCCTACGTCCTGGACCGGCGGTGGGGTTTCGCCACCGGCCTCCCCTTTACTCTGCAGGACGACGAGATCGACCCC CAGCTACCGTTTCCGGACCAACATCCCTTCCTCGTTGCCATGATAACGTATTCTCGGCTAGGCGCCAAAGTCTGG CGGCAGGTGTCGCACTTCGGGCCCGTGCTGGCGCGCGAACTGCGACAGGAGGAGATTGAGGACCTTGATCGCGAG ATTCTGGAGTGGTACGAGACGGTGCCCGAGGATGTCAAGGTGCGGAGCTGGGACAAGGACAAGTCGATGACGACG TATGATCTGCGCCGGCTGAGGATCTGGATCTATCTGAGGTTCAACCAGCTCCGCATATGGTTGTACACGCCCATT CTGCACAGCGCGACGAGCATCATGTCGAACCCGCGACAAGCTCAGCGCGTCGTCGACCTCGCCAAGGACACGATC CAGTACCTGCACCACCTCAACAACACGACGAACGTGTACCGTAACGGCCAGGTCTTCTACCACCAGTTCCTAGCG TCGTCCATCGCCGTCGTCTTCCTGGCGTCGGTGCATGCGCCCGTACGGTTCAGCGCCCTCTGCCGCCAAGAGTTT TACGTGGCCCTCGAACTGGTCAAGGATTTGTCCTCCAAGAGCTGGGTCTCGAAGCGGCTGTGGCGCACCATCAAA TCTCTAAAGGACGTGGCGCCGCGCGTCGGGCTCAGTCCGGACATTGAAACCCGCTCAGCCATCGCGCTGCACATG ACGACGTTTCCGAGCCTGGGCATGATGAGTCCTCCGCAACAGCAGCAGCAGCAGCAACAGCAGCAGCAGCAGCAA CAACAACAACAACAACAGCACCAGCATCAGCACCAACAACAACAGCCAGAGCAAAATCCGGATTCTCCGTGGCTA GACAACGGCAAAGAGCTCCAGACGGAGCTGTCCAAGATCTTTGAAGACTATGTCGGCACCAGCGCCGGCCATGGC TCGACGCTCGCGTTGTCCTCTTCGCCGGGCGCCGGTGGCGACGCCTTTTCCACCAGCGGAACCCTATTCCAGGAT CTGCGCGAGATGTTTTGA |
| Gene | >Ophio5|8556 ATGGGCTATCGTTGTGTCGACGACGTCAGCGACCAGGAACAGCAATCGAGCGAAATCGCCGCCGCCGCCGCCCCT GCCATGGACGCGCCTTGCGATCCGCTCTTCGATTTCGACAAGGACGAGATTGTTCGCCTTTGCCAATTCCACCAG GACGAGGTCGGCATCATGTATCCCGTCCTCGACATGCACGCCGTCATGGCCCACGCCAGGAACTTAGCCGACATG CTGGCCGAGGCCCGCAGTCAGCGGCGCCCGCTCGAGGCCATCAACGACGACAAGACGCTGCAACTCAAGATAGTC ATGTGCTGTGCCCTCGTCGTCGAGCAGCACGGTCACAGCGAAGAGGCGACTCGCCTGTACGAGAGCATGGACGCC GTTCTCAACCGCAAGCTCATGGCCGAAGCCAGTGACGTGGCCAGCCTGCCTCTGTTTTGCCTCATTGCCGGCTAT CGCTTCCTGTCGAGCGAGGAGATACTCGCGTGGCGCGTCATGGGCCACGTCGTCCGACTTTGCGTTGAGCTGGGC ATCCACCAGAAGAGGGGCTTGATGGGCATCTCCGACGAGGCGGAGAGGATCAATGCCCTCAACAGCTTCTGGGTC GCCTACGTCCTGGACCGGCGGTGGGGTTTCGCCACCGGCCTCCCCTTTACTCTGCAGGACGACGAGATCGACCCC CAGCTACCGTTTCCGGTGAGTGAGAGATATCCGATACCTGTTGACCCTTTTTCTCTCCTTTGTTCGCCGAACTCT GACCTCTCTTCTTGTTCCCCTCTCAAGGACCAACATCCCTTCCTCGTTGCCATGATAACGTATTCTCGGCTAGGC GCCAAAGTCTGGCGGCAGGTGTCGCACTTCGGGCCCGTGCTGGCGCGCGAACTGCGACAGGAGGAGATTGAGGAC CTTGATCGCGAGATTCTGGAGTGGTACGAGACGGTGCCCGAGGATGTCAAGGTGCGGAGCTGGGACAAGGACAAG TCGATGACGACGTATGATCTGCGCCGGCTGAGGATCTGGATCTATCTGAGGTTCAACCAGGTGAGAAGCCCTGGC GGGACGGGGTGAAGGCGGCCGCTGACATGGACGTGCAAGCTCCGCATATGGTTGTACACGCCCATTCTGCACAGC GCGACGAGCATCATGTCGAACCCGCGACAAGCTCAGCGCGTCGTCGACCTCGCCAAGGACACGATCCAGTACCTG CACCACCTCAACAACACGACGAACGTGTACCGTAACGGCCAGGTCTTCTACCACCAGTTCCTAGCGTCGTCCATC GCCGTCGTCTTCCTGGCGTCGGTGCATGCGCCCGTACGGTTCAGCGCCCTCTGCCGCCAAGAGTTTTACGTGGCC CTCGAACTGGTCAAGGATTTGTCCTCCAAGAGCTGGGTCTCGAAGCGGCTGTGGCGCACCATCAAATCTCTAAAG GACGTGGCGCCGCGCGTCGGGCTCAGTCCGGACATTGAAACCCGCTCAGCCATCGCGCTGCACATGACGACGTTT CCGAGCCTGGGCATGATGAGTCCTCCGCAACAGCAGCAGCAGCAGCAACAGCAGCAGCAGCAGCAACAACAACAA CAACAACAGCACCAGCATCAGCACCAACAACAACAGCCAGAGCAAAATCCGGATTCTCCGTGGCTAGACAACGGC AAAGAGCTCCAGACGGAGCTGTCCAAGATCTTTGAAGACTATGTCGGCACCAGCGCCGGCCATGGCTCGACGCTC GCGTTGTCCTCTTCGCCGGGCGCCGGTGGCGACGCCTTTTCCACCAGCGGAACCCTATTCCAGGATCTGCGCGAG ATGTTTTGA |