© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|8524 |
| Gene name | |
| Location | scaffold_963:2524..3563 |
| Strand | - |
| Gene length (bp) | 1039 |
| Transcript length (bp) | 951 |
| Coding sequence length (bp) | 948 |
| Protein length (aa) | 316 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04031 | Las1 | Las1-like | 1.5E-56 | 8 | 160 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O42936|LAS1_SCHPO | Pre-rRNA-processing protein las1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=las1 PE=1 SV=1 | 9 | 171 | 2.0E-23 |
| sp|P36146|LAS1_YEAST | Protein LAS1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=LAS1 PE=1 SV=1 | 9 | 158 | 5.0E-22 |
| sp|A2BE28|LAS1L_MOUSE | Ribosomal biogenesis protein LAS1L OS=Mus musculus GN=Las1l PE=1 SV=1 | 3 | 170 | 4.0E-08 |
| sp|Q9Y4W2|LAS1L_HUMAN | Ribosomal biogenesis protein LAS1L OS=Homo sapiens GN=LAS1L PE=1 SV=2 | 5 | 158 | 7.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0090730 | Las1 complex | Yes |
| GO:0006364 | rRNA processing | Yes |
| GO:0004519 | endonuclease activity | Yes |
| GO:0090304 | nucleic acid metabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0006139 | nucleobase-containing compound metabolic process | No |
| GO:1902494 | catalytic complex | No |
| GO:0046483 | heterocycle metabolic process | No |
| GO:1905354 | exoribonuclease complex | No |
| GO:0004518 | nuclease activity | No |
| GO:0044238 | primary metabolic process | No |
| GO:0032991 | protein-containing complex | No |
| GO:1902555 | endoribonuclease complex | No |
| GO:0006725 | cellular aromatic compound metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0016788 | hydrolase activity, acting on ester bonds | No |
| GO:1990234 | transferase complex | No |
| GO:0034470 | ncRNA processing | No |
| GO:0061695 | transferase complex, transferring phosphorus-containing groups | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0009987 | cellular process | No |
| GO:0016787 | hydrolase activity | No |
| GO:0005575 | cellular_component | No |
| GO:0016070 | RNA metabolic process | No |
| GO:0006396 | RNA processing | No |
| GO:0016072 | rRNA metabolic process | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0034660 | ncRNA metabolic process | No |
| GO:0003824 | catalytic activity | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| GO:1902911 | protein kinase complex | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 43.37 | 21.44 | 65.29 |
| CcL | In ants, during behavior modification | 81.52 | 41.30 | 121.74 |
| CcD | In ants, recently dead | 59.93 | 31.56 | 88.29 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.009347 | yes |
| SC16a | CcD | 0.200368 | no |
| CcL | CcD | 0.217008 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|8524 MVRYVFNSWRRRRELLRVRRQFYHDDSDSRETRRLSRQQAVGRVSMWMTRQHCPHIVESTALLTAALLSDDVDSV AAWSAYAVRATYAAAFSRFVTGLLDGHQDKQRKQSMYVVAATIGLPATFVELRHQSTHEQLPSRAKLRAMAERAL VWMWNYYWRHLKEEEEDDDDDESRRAVLAYLNAPDNGDDDDDDDDARRVATLDLLRRWDTDRVVATISRLQDSLP GNQAFLKCLSLKRDLMRVVGPDVRVRAEAELRSGADRESDIGPDADSRSEGVADDQVSHEAHSALDAEDSDADGG WSLLVGPWRAKPIGVV |
| Coding | >Ophio5|8524 ATGGTACGCTACGTCTTCAACAGTTGGCGGCGCCGGCGCGAGCTGCTGCGGGTTCGGCGGCAATTCTACCACGAC GACTCCGATAGTCGTGAGACACGACGTCTTAGTCGGCAGCAGGCCGTCGGACGCGTCTCCATGTGGATGACGCGA CAGCACTGCCCGCACATAGTGGAGTCGACGGCCCTGCTCACGGCGGCGTTGTTGAGTGACGACGTCGACTCGGTG GCTGCTTGGTCCGCCTACGCTGTCCGAGCTACCTATGCCGCTGCTTTTAGCAGGTTCGTCACGGGCTTGCTTGAT GGTCATCAGGATAAGCAGCGAAAGCAGAGCATGTATGTCGTGGCCGCGACAATCGGCCTACCTGCTACCTTTGTC GAGCTTCGCCATCAGTCTACGCATGAGCAGTTGCCATCACGGGCTAAGCTGCGCGCCATGGCGGAACGGGCCCTG GTCTGGATGTGGAATTACTACTGGAGACACTTAAAAGAGGAGGAGGAGGACGACGACGACGACGAGTCACGCCGC GCCGTCCTGGCTTATCTCAACGCCCCGGACAACGGGGATGACGACGACGACGATGACGATGCACGACGCGTTGCT ACGCTGGACCTCCTACGCCGCTGGGACACGGACCGGGTAGTGGCAACCATTTCCCGGCTGCAGGATTCGCTGCCC GGGAACCAGGCTTTTCTCAAGTGCCTCAGCCTGAAGCGGGACCTCATGCGTGTCGTTGGACCGGATGTCAGGGTC CGAGCGGAGGCTGAGCTGCGGTCCGGTGCGGATCGCGAGTCGGACATCGGGCCGGACGCCGACTCACGTTCGGAA GGGGTTGCCGACGACCAAGTTAGTCATGAGGCGCATAGTGCGCTCGATGCGGAGGACTCTGACGCCGATGGTGGC TGGTCGTTGCTCGTCGGGCCGTGGAGGGCTAAGCCCATTGGTGTGGTG |
| Transcript | >Ophio5|8524 ATGGTACGCTACGTCTTCAACAGTTGGCGGCGCCGGCGCGAGCTGCTGCGGGTTCGGCGGCAATTCTACCACGAC GACTCCGATAGTCGTGAGACACGACGTCTTAGTCGGCAGCAGGCCGTCGGACGCGTCTCCATGTGGATGACGCGA CAGCACTGCCCGCACATAGTGGAGTCGACGGCCCTGCTCACGGCGGCGTTGTTGAGTGACGACGTCGACTCGGTG GCTGCTTGGTCCGCCTACGCTGTCCGAGCTACCTATGCCGCTGCTTTTAGCAGGTTCGTCACGGGCTTGCTTGAT GGTCATCAGGATAAGCAGCGAAAGCAGAGCATGTATGTCGTGGCCGCGACAATCGGCCTACCTGCTACCTTTGTC GAGCTTCGCCATCAGTCTACGCATGAGCAGTTGCCATCACGGGCTAAGCTGCGCGCCATGGCGGAACGGGCCCTG GTCTGGATGTGGAATTACTACTGGAGACACTTAAAAGAGGAGGAGGAGGACGACGACGACGACGAGTCACGCCGC GCCGTCCTGGCTTATCTCAACGCCCCGGACAACGGGGATGACGACGACGACGATGACGATGCACGACGCGTTGCT ACGCTGGACCTCCTACGCCGCTGGGACACGGACCGGGTAGTGGCAACCATTTCCCGGCTGCAGGATTCGCTGCCC GGGAACCAGGCTTTTCTCAAGTGCCTCAGCCTGAAGCGGGACCTCATGCGTGTCGTTGGACCGGATGTCAGGGTC CGAGCGGAGGCTGAGCTGCGGTCCGGTGCGGATCGCGAGTCGGACATCGGGCCGGACGCCGACTCACGTTCGGAA GGGGTTGCCGACGACCAAGTTAGTCATGAGGCGCATAGTGCGCTCGATGCGGAGGACTCTGACGCCGATGGTGGC TGGTCGTTGCTCGTCGGGCCGTGGAGGGCTAAGCCCATTGGTGTGGTGTAG |
| Gene | >Ophio5|8524 ATGGTACGCTACGTCTTCAACAGTTGGCGGCGCCGGCGCGAGCTGCTGCGGGTTCGGCGGCAATTCTACCACGAC GACTCCGATAGTCGTGAGACACGACGTCTTAGTCGGCAGCAGGCCGTCGGACGCGTCTCCATGTGGATGACGCGA CAGCACTGCCCGCACATAGTGGAGTCGACGGCCCTGCTCACGGCGGCGTTGTTGAGTGACGACGTCGACTCGGTG GCTGCTTGGTCCGCCTACGCTGTCCGAGCTACCTATGCCGCTGCTTTTAGCAGGTGAGCCGCATACCGGGCGCAA AAAGATGGGGGGGGGGGGACCTTAGCTTGAGATTTTTCTCATCATTCTTTCTGTTTTGCTGCATAGGTTCGTCAC GGGCTTGCTTGATGGTCATCAGGATAAGCAGCGAAAGCAGAGCATGTATGTCGTGGCCGCGACAATCGGCCTACC TGCTACCTTTGTCGAGCTTCGCCATCAGTCTACGCATGAGCAGTTGCCATCACGGGCTAAGCTGCGCGCCATGGC GGAACGGGCCCTGGTCTGGATGTGGAATTACTACTGGAGACACTTAAAAGAGGAGGAGGAGGACGACGACGACGA CGAGTCACGCCGCGCCGTCCTGGCTTATCTCAACGCCCCGGACAACGGGGATGACGACGACGACGATGACGATGC ACGACGCGTTGCTACGCTGGACCTCCTACGCCGCTGGGACACGGACCGGGTAGTGGCAACCATTTCCCGGCTGCA GGATTCGCTGCCCGGGAACCAGGCTTTTCTCAAGTGCCTCAGCCTGAAGCGGGACCTCATGCGTGTCGTTGGACC GGATGTCAGGGTCCGAGCGGAGGCTGAGCTGCGGTCCGGTGCGGATCGCGAGTCGGACATCGGGCCGGACGCCGA CTCACGTTCGGAAGGGGTTGCCGACGACCAAGTTAGTCATGAGGCGCATAGTGCGCTCGATGCGGAGGACTCTGA CGCCGATGGTGGCTGGTCGTTGCTCGTCGGGCCGTGGAGGGCTAAGCCCATTGGTGTGGTGTAG |