© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Ophio5|8513 |
| Gene name | |
| Location | scaffold_96:29697..30733 |
| Strand | - |
| Gene length (bp) | 1036 |
| Transcript length (bp) | 681 |
| Coding sequence length (bp) | 678 |
| Protein length (aa) | 226 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 22 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 14.36 | 4.57 | 24.14 |
| CcL | In ants, during behavior modification | 29.51 | 11.40 | 47.61 |
| CcD | In ants, recently dead | 20.63 | 7.47 | 33.79 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.020657 | yes |
| SC16a | CcD | 0.279674 | no |
| CcL | CcD | 0.268557 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|8513 MMSGVLSELWVFGALVWYSQGASAPAPTCAYQNGSLEPAGRPHHIPIGRMVRHHRVAVSTASPYLWPEAEARPLR GTVLSGWLARRAMQSGAVGSSEPSYFDVFPGFKPTLPILDETMPTSTAKRHDGDDDDDDDDDDDDDYDYDYDYDY DDEKEENDVLSSEKIVQSGVDDGATGLAWRRMMPDDGAVTDTSSPSSGIKTATAKTTAHHHAHNIDPPRPARDEF E |
| Coding | >Ophio5|8513 ATGATGAGCGGTGTCCTATCTGAACTTTGGGTGTTTGGCGCGTTGGTTTGGTACAGTCAGGGAGCTTCAGCGCCT GCCCCGACCTGTGCTTACCAGAACGGTTCTCTCGAGCCTGCCGGGAGGCCGCATCACATCCCTATAGGCCGCATG GTCCGACATCATCGAGTCGCAGTTTCTACTGCGTCGCCCTACCTGTGGCCTGAAGCTGAGGCCAGGCCGCTGCGA GGCACCGTCTTGTCAGGCTGGCTGGCGCGCAGAGCCATGCAGTCCGGCGCCGTGGGCTCCAGCGAGCCCAGCTAC TTCGATGTCTTTCCCGGCTTCAAGCCGACTCTGCCAATCCTCGACGAAACGATGCCGACGTCCACGGCTAAGCGC CACGACGGCGATGACGACGACGACGACGACGACGACGACGACGACGACTACGACTACGACTACGACTACGACTAC GACGACGAGAAGGAAGAGAATGATGTTCTCAGCAGTGAAAAGATCGTTCAAAGCGGTGTCGACGATGGAGCTACC GGCCTCGCATGGCGTCGGATGATGCCCGATGACGGCGCCGTGACGGACACATCCTCACCCTCGTCCGGCATCAAG ACAGCAACAGCAAAGACAACAGCTCACCACCATGCCCACAACATCGACCCTCCCCGCCCGGCCCGCGACGAATTC GAA |
| Transcript | >Ophio5|8513 ATGATGAGCGGTGTCCTATCTGAACTTTGGGTGTTTGGCGCGTTGGTTTGGTACAGTCAGGGAGCTTCAGCGCCT GCCCCGACCTGTGCTTACCAGAACGGTTCTCTCGAGCCTGCCGGGAGGCCGCATCACATCCCTATAGGCCGCATG GTCCGACATCATCGAGTCGCAGTTTCTACTGCGTCGCCCTACCTGTGGCCTGAAGCTGAGGCCAGGCCGCTGCGA GGCACCGTCTTGTCAGGCTGGCTGGCGCGCAGAGCCATGCAGTCCGGCGCCGTGGGCTCCAGCGAGCCCAGCTAC TTCGATGTCTTTCCCGGCTTCAAGCCGACTCTGCCAATCCTCGACGAAACGATGCCGACGTCCACGGCTAAGCGC CACGACGGCGATGACGACGACGACGACGACGACGACGACGACGACGACTACGACTACGACTACGACTACGACTAC GACGACGAGAAGGAAGAGAATGATGTTCTCAGCAGTGAAAAGATCGTTCAAAGCGGTGTCGACGATGGAGCTACC GGCCTCGCATGGCGTCGGATGATGCCCGATGACGGCGCCGTGACGGACACATCCTCACCCTCGTCCGGCATCAAG ACAGCAACAGCAAAGACAACAGCTCACCACCATGCCCACAACATCGACCCTCCCCGCCCGGCCCGCGACGAATTC GAATAG |
| Gene | >Ophio5|8513 ATGATGAGCGGTGTCCTATCTGAACTTTGGGTGTTTGGCGCGTTGGTTTGGTACAGTCAGGGGTAAGGCCCCCCT TTTCCCCCCGACATGGCACGGCGACGACTGGGACCGCCTAGTGGGCGGCTATTACTGTCTGCGATACGAGAAGAA AAAGATGAAAGCGTCGATGCGAAATGAAAGAAGTTGTGTACAGTCTGATCGAAACATGGCCCAAGTATAGAGCTT CAGCGCCTGCCCCGACCTGTGCTTACCAGAACGGTTCTCTCGAGCCTGCCGGGGTCTTCGGAGAGTAAGGAGGCC AGGAGCAAGTCCTCATGGCTGCTCACCCCCGTGTCTAAGCTGGAAGACACACTCGCGGGCGCCCAACGATTTAAC GAAAAAAACGCGCATCCTACCTATGCAACCTATGCACATCTCAGAGGCCGCATCACATCCCTATAGGCCGCATGG TCCGACATCATCGAGTCGCAGTTTCTACTGCGTCGCCCTACCTGTGGCCTGAAGCTGAGGCCAGGCCGCTGCGAG GCACCGTCTTGTCAGGCTGGCTGGCGCGCAGAGCCATGCAGTCCGGCGCCGTGGGCTCCAGCGAGCCCAGGTGCG TGCATTCGATTTGGTCTCAGCAGACGGCGGCTCATGCGCCGCTTACCGCAGCTACTTCGATGTCTTTCCCGGCTT CAAGCCGACTCTGCCAATCCTCGACGAAACGATGCCGACGTCCACGGCTAAGCGCCACGACGGCGATGACGACGA CGACGACGACGACGACGACGACGACGACTACGACTACGACTACGACTACGACTACGACGACGAGAAGGAAGAGAA TGATGTTCTCAGCAGTGAAAAGATCGTTCAAAGCGGTGTCGACGATGGAGCTACCGGCCTCGCATGGCGTCGGAT GATGCCCGATGACGGCGCCGTGACGGACACATCCTCACCCTCGTCCGGCATCAAGACAGCAACAGCAAAGACAAC AGCTCACCACCATGCCCACAACATCGACCCTCCCCGCCCGGCCCGCGACGAATTCGAATAG |