Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|8509
Gene name
Locationscaffold_96:22994..23600
Strand+
Gene length (bp)606
Transcript length (bp)606
Coding sequence length (bp)603
Protein length (aa) 201

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PFAM Domains

(None)

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|Q01589|SED1_YEAST Cell wall protein SED1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SED1 PE=1 SV=1 48 89 7.0E-10
sp|Q01302|CCG6_NEUCR Clock-controlled protein 6 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=ccg-6 PE=2 SV=2 45 92 2.0E-09
sp|P40092|SPI1_YEAST Uncharacterized cell wall protein SPI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SPI1 PE=2 SV=1 47 89 1.0E-08
sp|Q01589|SED1_YEAST Cell wall protein SED1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SED1 PE=1 SV=1 51 86 3.0E-08

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 18 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|8509
MFAKTAIVAAFAGLVASEYTSSMGSYDNQGGEEYPTSSYKAVPTTTKVVNQYITYCPVPTVVTMNDKYYTVSQPT
TLTINDCPCTVTEPCYTCAPTAYPKPSDNSYPDNSYNKPDEKKDDYSKPDEKKDSYNKPDEKKDTYSKPDEKKDT
YNNNNNNNNDYKKDDKKDSYKPVEVAGADARHIAYGLAMALAGVVGYVALL
Coding >Ophio5|8509
ATGTTCGCCAAGACCGCCATCGTCGCTGCCTTCGCCGGCCTCGTCGCTTCCGAGTACACCAGCTCGATGGGCTCT
TACGACAACCAGGGTGGTGAGGAGTACCCTACGTCGAGCTACAAGGCCGTTCCGACTACGACCAAGGTGGTGAAC
CAGTACATCACCTACTGCCCCGTGCCTACGGTGGTGACGATGAACGACAAGTACTACACCGTCTCGCAGCCTACG
ACTCTCACCATCAATGACTGCCCTTGCACCGTTACCGAGCCTTGCTATACTTGCGCTCCTACCGCCTACCCCAAG
CCCAGCGACAACTCGTACCCTGACAACAGCTACAACAAGCCTGATGAGAAGAAGGATGACTACAGCAAGCCTGAC
GAGAAGAAGGACAGCTACAACAAGCCTGACGAGAAGAAGGATACCTACAGCAAGCCTGACGAGAAGAAGGATACC
TACAACAACAACAACAACAACAACAACGATTACAAGAAGGATGACAAGAAGGACAGCTACAAGCCGGTCGAGGTC
GCCGGCGCCGATGCCCGCCACATTGCTTACGGTCTGGCCATGGCTCTCGCCGGTGTCGTCGGCTACGTCGCTCTC
CTG
Transcript >Ophio5|8509
ATGTTCGCCAAGACCGCCATCGTCGCTGCCTTCGCCGGCCTCGTCGCTTCCGAGTACACCAGCTCGATGGGCTCT
TACGACAACCAGGGTGGTGAGGAGTACCCTACGTCGAGCTACAAGGCCGTTCCGACTACGACCAAGGTGGTGAAC
CAGTACATCACCTACTGCCCCGTGCCTACGGTGGTGACGATGAACGACAAGTACTACACCGTCTCGCAGCCTACG
ACTCTCACCATCAATGACTGCCCTTGCACCGTTACCGAGCCTTGCTATACTTGCGCTCCTACCGCCTACCCCAAG
CCCAGCGACAACTCGTACCCTGACAACAGCTACAACAAGCCTGATGAGAAGAAGGATGACTACAGCAAGCCTGAC
GAGAAGAAGGACAGCTACAACAAGCCTGACGAGAAGAAGGATACCTACAGCAAGCCTGACGAGAAGAAGGATACC
TACAACAACAACAACAACAACAACAACGATTACAAGAAGGATGACAAGAAGGACAGCTACAAGCCGGTCGAGGTC
GCCGGCGCCGATGCCCGCCACATTGCTTACGGTCTGGCCATGGCTCTCGCCGGTGTCGTCGGCTACGTCGCTCTC
CTGTAA
Gene >Ophio5|8509
ATGTTCGCCAAGACCGCCATCGTCGCTGCCTTCGCCGGCCTCGTCGCTTCCGAGTACACCAGCTCGATGGGCTCT
TACGACAACCAGGGTGGTGAGGAGTACCCTACGTCGAGCTACAAGGCCGTTCCGACTACGACCAAGGTGGTGAAC
CAGTACATCACCTACTGCCCCGTGCCTACGGTGGTGACGATGAACGACAAGTACTACACCGTCTCGCAGCCTACG
ACTCTCACCATCAATGACTGCCCTTGCACCGTTACCGAGCCTTGCTATACTTGCGCTCCTACCGCCTACCCCAAG
CCCAGCGACAACTCGTACCCTGACAACAGCTACAACAAGCCTGATGAGAAGAAGGATGACTACAGCAAGCCTGAC
GAGAAGAAGGACAGCTACAACAAGCCTGACGAGAAGAAGGATACCTACAGCAAGCCTGACGAGAAGAAGGATACC
TACAACAACAACAACAACAACAACAACGATTACAAGAAGGATGACAAGAAGGACAGCTACAAGCCGGTCGAGGTC
GCCGGCGCCGATGCCCGCCACATTGCTTACGGTCTGGCCATGGCTCTCGCCGGTGTCGTCGGCTACGTCGCTCTC
CTGTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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