© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|8498 |
| Gene name | |
| Location | scaffold_957:1128..3496 |
| Strand | + |
| Gene length (bp) | 2368 |
| Transcript length (bp) | 2169 |
| Coding sequence length (bp) | 2166 |
| Protein length (aa) | 722 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04082 | Fungal_trans | Fungal specific transcription factor domain | 1.9E-09 | 127 | 302 |
| PF00172 | Zn_clus | Fungal Zn(2)-Cys(6) binuclear cluster domain | 1.8E-05 | 16 | 47 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q1MTM9|YFN1_SCHPO | Uncharacterized transcriptional regulatory protein C1327.01c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC1327.01c PE=1 SV=2 | 129 | 413 | 4.0E-10 |
| sp|Q9HDX1|YKN4_SCHPO | Uncharacterized transcriptional regulatory protein PB1A11.04c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAPB1A11.04c PE=3 SV=1 | 7 | 343 | 4.0E-09 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006351 | transcription, DNA-templated | Yes |
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific | Yes |
| GO:0006355 | regulation of transcription, DNA-templated | Yes |
| GO:0008270 | zinc ion binding | Yes |
| GO:0003677 | DNA binding | Yes |
| GO:0003676 | nucleic acid binding | No |
| GO:0019219 | regulation of nucleobase-containing compound metabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0043169 | cation binding | No |
| GO:0043167 | ion binding | No |
| GO:0008152 | metabolic process | No |
| GO:0006139 | nucleobase-containing compound metabolic process | No |
| GO:1901576 | organic substance biosynthetic process | No |
| GO:0010468 | regulation of gene expression | No |
| GO:0046872 | metal ion binding | No |
| GO:0046483 | heterocycle metabolic process | No |
| GO:0051171 | regulation of nitrogen compound metabolic process | No |
| GO:0065007 | biological regulation | No |
| GO:0090304 | nucleic acid metabolic process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0031323 | regulation of cellular metabolic process | No |
| GO:0140110 | transcription regulator activity | No |
| GO:0050794 | regulation of cellular process | No |
| GO:0019222 | regulation of metabolic process | No |
| GO:0018130 | heterocycle biosynthetic process | No |
| GO:0060255 | regulation of macromolecule metabolic process | No |
| GO:0006725 | cellular aromatic compound metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0003700 | DNA-binding transcription factor activity | No |
| GO:0009058 | biosynthetic process | No |
| GO:0044249 | cellular biosynthetic process | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| GO:0051252 | regulation of RNA metabolic process | No |
| GO:0031326 | regulation of cellular biosynthetic process | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:1901362 | organic cyclic compound biosynthetic process | No |
| GO:0010556 | regulation of macromolecule biosynthetic process | No |
| GO:0046914 | transition metal ion binding | No |
| GO:2001141 | regulation of RNA biosynthetic process | No |
| GO:1903506 | regulation of nucleic acid-templated transcription | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0034654 | nucleobase-containing compound biosynthetic process | No |
| GO:0019438 | aromatic compound biosynthetic process | No |
| GO:0050789 | regulation of biological process | No |
| GO:0016070 | RNA metabolic process | No |
| GO:0097659 | nucleic acid-templated transcription | No |
| GO:0009889 | regulation of biosynthetic process | No |
| GO:0009059 | macromolecule biosynthetic process | No |
| GO:0080090 | regulation of primary metabolic process | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0044271 | cellular nitrogen compound biosynthetic process | No |
| GO:0032774 | RNA biosynthetic process | No |
| GO:0009987 | cellular process | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0005488 | binding | No |
| GO:0071704 | organic substance metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 16 | 0.45 |
| Transcription Factor Class (based on PFAM domains) |
|---|
| Fungal Specific TF |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 146.67 | 72.03 | 221.31 |
| CcL | In ants, during behavior modification | 217.51 | 98.81 | 336.21 |
| CcD | In ants, recently dead | 118.82 | 59.46 | 178.18 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.139378 | no |
| SC16a | CcD | 0.442852 | no |
| CcL | CcD | 0.013548 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|8498 MSSAVVRSTALRAGGACVRCRKGKTKCVYENGRAPCKNCAKGMHECYLPSESMAHHHGQSPARHASSTHHRPARD SLPTSGSGGTDARPQALGSGGSRHVQAASEKLTPELIAECERVVSKTFPACVAFHKPSFVQQLKNASLESTLVYG LLTCAARSSPSLIRRYGSPTQAAETFAAKAIALVNQNLDHPNLADIQALCLLIIHEWGTRNAVRAYIYLGQAARM LQMYRILNSHHASDSADQFLRDESLRRTLWLVYILDCLLTSTPGRFPALSVQDTADVALPCSDINFAFGNAVHVK TLAQNLVGSSAVPSPTASNGPGTWGEVGEFGHIVLAATIWRDVVAMLTVSTLQDFREEACASLIAKIEGLRASLP MQFVDKPGQINLHMTMGSGYTFAMLHCLLQCATVFVQRRRLLQEVTASGFTLESFRMSPRCHDIIDRLFTSCHGT ISLLTAVEAGVEKDQATCFPIFMLFSSFTASATVAYLSLKGLTPPNAVETAAHIVKDGLRFMHDGTENWPLMTSW LRHLTVMQRVLNNDAAAAASGGSASSRHGSNSHHGGIKDEAESEADTNPDAMDYDQASASGGGGGGGGGSGGGGG GGSGQVEPAPRSVSESGREDSEPPVAAPRRPGVTTINGGSGGVSTPATANSPPSGAAPQASMQAQDGGKQQSPDV VSVSNGMAPNQEGQTTSQDMTAPELCQAFERQLLDLDDLAAFMGGGV |
| Coding | >Ophio5|8498 ATGTCGTCGGCCGTCGTCCGTTCGACCGCCCTCAGGGCAGGAGGCGCCTGCGTTCGTTGTCGCAAGGGCAAGACC AAATGCGTCTACGAAAACGGCCGAGCGCCTTGCAAGAACTGCGCAAAGGGAATGCACGAATGCTATCTTCCATCC GAGAGCATGGCCCATCATCACGGTCAGAGTCCGGCTCGGCATGCCAGCAGCACTCATCACCGTCCTGCTCGCGAC AGTCTTCCGACCTCCGGCTCCGGCGGAACAGACGCCCGACCACAGGCTCTGGGCTCGGGTGGATCGCGACATGTT CAGGCAGCTTCGGAGAAGCTCACGCCGGAGCTCATCGCCGAATGCGAGCGAGTCGTCTCAAAGACGTTTCCCGCC TGCGTCGCGTTCCACAAACCCTCGTTTGTGCAGCAGCTCAAGAATGCGTCGCTGGAATCGACGCTGGTATACGGC CTGTTGACTTGCGCCGCACGGAGCTCCCCCAGCCTCATTCGTCGCTACGGTTCCCCGACTCAGGCCGCAGAGACC TTCGCCGCAAAGGCCATCGCCCTCGTCAACCAGAACCTCGATCACCCCAACCTAGCCGACATACAGGCCCTCTGC CTCCTCATCATCCACGAATGGGGCACTCGCAATGCCGTTCGCGCCTACATCTACCTCGGCCAGGCAGCCCGCATG TTGCAGATGTACAGGATCCTCAACAGCCATCACGCCTCGGACAGCGCCGATCAGTTCCTCCGCGACGAGTCTCTC CGCCGCACCTTGTGGCTCGTCTACATCCTCGACTGCCTCCTGACCAGCACCCCTGGTCGCTTCCCGGCTCTGTCG GTTCAGGACACGGCTGATGTGGCCCTGCCTTGCTCCGACATCAACTTTGCCTTTGGCAACGCCGTTCACGTCAAG ACGCTGGCCCAGAACCTCGTCGGCTCGTCGGCCGTACCCTCCCCGACCGCCTCGAATGGCCCGGGGACTTGGGGC GAAGTGGGCGAGTTTGGCCACATCGTCCTGGCCGCCACCATCTGGCGCGATGTCGTCGCCATGCTCACCGTCAGC ACCTTGCAGGACTTCCGCGAGGAGGCCTGCGCCAGCCTCATTGCCAAGATCGAGGGCCTCCGCGCCTCGCTGCCG ATGCAGTTCGTCGACAAGCCAGGCCAGATCAACCTCCACATGACAATGGGCTCGGGCTACACCTTTGCCATGCTG CACTGCCTGTTGCAGTGCGCCACCGTCTTCGTCCAGCGCCGCCGCCTGTTGCAGGAGGTGACGGCCTCGGGCTTT ACCCTCGAGTCGTTTCGCATGAGCCCGCGCTGCCACGACATCATCGACCGCCTCTTCACCTCGTGCCACGGCACC ATTTCCCTGCTCACGGCCGTCGAGGCCGGCGTGGAAAAGGATCAGGCCACGTGTTTCCCCATCTTCATGCTCTTC TCCTCCTTTACCGCCAGCGCCACCGTCGCCTACCTGTCTCTCAAGGGCCTGACGCCGCCCAACGCGGTCGAGACG GCAGCTCACATCGTCAAGGACGGCCTGCGCTTCATGCACGACGGCACCGAGAACTGGCCTCTTATGACGAGTTGG CTCAGGCACCTGACTGTCATGCAGCGAGTGCTCAACAACGACGCCGCCGCCGCCGCCTCGGGCGGATCGGCCTCT TCGCGTCACGGCTCCAACTCGCACCACGGCGGCATCAAGGACGAGGCCGAGTCGGAAGCCGATACCAATCCGGAC GCCATGGACTACGACCAGGCCAGCGCCAGCGGCGGCGGTGGAGGCGGAGGAGGCGGCAGTGGCGGAGGCGGAGGA GGCGGATCCGGTCAGGTGGAGCCGGCGCCGCGGTCGGTGTCGGAGTCGGGCCGGGAGGACAGCGAGCCGCCGGTG GCGGCGCCGCGCCGGCCGGGGGTGACGACGATCAACGGAGGGTCCGGCGGCGTGTCGACGCCGGCGACGGCCAAC TCTCCGCCGTCGGGCGCGGCACCGCAGGCGTCGATGCAGGCGCAGGACGGCGGCAAGCAACAGAGCCCGGACGTG GTGTCGGTGTCGAACGGCATGGCGCCCAATCAGGAGGGCCAGACGACGAGCCAAGATATGACGGCGCCGGAGCTG TGCCAAGCATTCGAGCGGCAATTGCTGGACCTGGACGACCTGGCGGCCTTTATGGGCGGTGGGGTG |
| Transcript | >Ophio5|8498 ATGTCGTCGGCCGTCGTCCGTTCGACCGCCCTCAGGGCAGGAGGCGCCTGCGTTCGTTGTCGCAAGGGCAAGACC AAATGCGTCTACGAAAACGGCCGAGCGCCTTGCAAGAACTGCGCAAAGGGAATGCACGAATGCTATCTTCCATCC GAGAGCATGGCCCATCATCACGGTCAGAGTCCGGCTCGGCATGCCAGCAGCACTCATCACCGTCCTGCTCGCGAC AGTCTTCCGACCTCCGGCTCCGGCGGAACAGACGCCCGACCACAGGCTCTGGGCTCGGGTGGATCGCGACATGTT CAGGCAGCTTCGGAGAAGCTCACGCCGGAGCTCATCGCCGAATGCGAGCGAGTCGTCTCAAAGACGTTTCCCGCC TGCGTCGCGTTCCACAAACCCTCGTTTGTGCAGCAGCTCAAGAATGCGTCGCTGGAATCGACGCTGGTATACGGC CTGTTGACTTGCGCCGCACGGAGCTCCCCCAGCCTCATTCGTCGCTACGGTTCCCCGACTCAGGCCGCAGAGACC TTCGCCGCAAAGGCCATCGCCCTCGTCAACCAGAACCTCGATCACCCCAACCTAGCCGACATACAGGCCCTCTGC CTCCTCATCATCCACGAATGGGGCACTCGCAATGCCGTTCGCGCCTACATCTACCTCGGCCAGGCAGCCCGCATG TTGCAGATGTACAGGATCCTCAACAGCCATCACGCCTCGGACAGCGCCGATCAGTTCCTCCGCGACGAGTCTCTC CGCCGCACCTTGTGGCTCGTCTACATCCTCGACTGCCTCCTGACCAGCACCCCTGGTCGCTTCCCGGCTCTGTCG GTTCAGGACACGGCTGATGTGGCCCTGCCTTGCTCCGACATCAACTTTGCCTTTGGCAACGCCGTTCACGTCAAG ACGCTGGCCCAGAACCTCGTCGGCTCGTCGGCCGTACCCTCCCCGACCGCCTCGAATGGCCCGGGGACTTGGGGC GAAGTGGGCGAGTTTGGCCACATCGTCCTGGCCGCCACCATCTGGCGCGATGTCGTCGCCATGCTCACCGTCAGC ACCTTGCAGGACTTCCGCGAGGAGGCCTGCGCCAGCCTCATTGCCAAGATCGAGGGCCTCCGCGCCTCGCTGCCG ATGCAGTTCGTCGACAAGCCAGGCCAGATCAACCTCCACATGACAATGGGCTCGGGCTACACCTTTGCCATGCTG CACTGCCTGTTGCAGTGCGCCACCGTCTTCGTCCAGCGCCGCCGCCTGTTGCAGGAGGTGACGGCCTCGGGCTTT ACCCTCGAGTCGTTTCGCATGAGCCCGCGCTGCCACGACATCATCGACCGCCTCTTCACCTCGTGCCACGGCACC ATTTCCCTGCTCACGGCCGTCGAGGCCGGCGTGGAAAAGGATCAGGCCACGTGTTTCCCCATCTTCATGCTCTTC TCCTCCTTTACCGCCAGCGCCACCGTCGCCTACCTGTCTCTCAAGGGCCTGACGCCGCCCAACGCGGTCGAGACG GCAGCTCACATCGTCAAGGACGGCCTGCGCTTCATGCACGACGGCACCGAGAACTGGCCTCTTATGACGAGTTGG CTCAGGCACCTGACTGTCATGCAGCGAGTGCTCAACAACGACGCCGCCGCCGCCGCCTCGGGCGGATCGGCCTCT TCGCGTCACGGCTCCAACTCGCACCACGGCGGCATCAAGGACGAGGCCGAGTCGGAAGCCGATACCAATCCGGAC GCCATGGACTACGACCAGGCCAGCGCCAGCGGCGGCGGTGGAGGCGGAGGAGGCGGCAGTGGCGGAGGCGGAGGA GGCGGATCCGGTCAGGTGGAGCCGGCGCCGCGGTCGGTGTCGGAGTCGGGCCGGGAGGACAGCGAGCCGCCGGTG GCGGCGCCGCGCCGGCCGGGGGTGACGACGATCAACGGAGGGTCCGGCGGCGTGTCGACGCCGGCGACGGCCAAC TCTCCGCCGTCGGGCGCGGCACCGCAGGCGTCGATGCAGGCGCAGGACGGCGGCAAGCAACAGAGCCCGGACGTG GTGTCGGTGTCGAACGGCATGGCGCCCAATCAGGAGGGCCAGACGACGAGCCAAGATATGACGGCGCCGGAGCTG TGCCAAGCATTCGAGCGGCAATTGCTGGACCTGGACGACCTGGCGGCCTTTATGGGCGGTGGGGTGTGA |
| Gene | >Ophio5|8498 ATGTCGTCGGCCGTCGTCCGTTCGACCGCCCTCAGGGCAGGAGGCGCCTGCGTTCGTTGTCGCAAGGGCAAGACC AAATGCGTCTACGAAAACGGCCGAGCGCCTTGCAAGAACTGCGCAAAGGGAATGCACGAATGCTATCTTCCATCC GAGAGCATGGCCCATCATCACGGTCAGAGTCCGGCTCGGCATGCCAGCAGCACTCATCACCGTCCTGCTCGCGAC AGTCTTCCGACCTCCGGCTCCGGCGGAACAGACGCCCGACCACAGGCTCTGGGCTCGGGTGGATCGCGACATGTT CAGGCAGCTTCGGAGAAGTGAGTCGTCGTCCATTCCGCGCCCGTAGTCATGACTAACGCCGTCTCTCGCCAGGCT CACGCCGGAGCTCATCGCCGAATGCGAGCGAGTCGTCTCAAAGACGTTTCCCGCCTGCGTCGCGTTCCACAAACC CTCGTTTGTGCAGCAGCTCAAGAATGCGTCGCTGGAATCGACGCTGGTATACGGCCTGTTGACTTGCGCCGCACG GTACGTTGCCCTCCTACCTTACCTCCCTTTGCATGGCCCCCATGGCTCCTCCGTCGCGGGCCGGAGCCGGTGCCG GCCTTCGGCGTCATTGTCCCCTCCGTCCTCATTGCCTAGGTAGGTAGTCGACTGACGGTACTCTTCCAGGAGCTC CCCCAGCCTCATTCGTCGCTACGGTTCCCCGACTCAGGCCGCAGAGACCTTCGCCGCAAAGGCCATCGCCCTCGT CAACCAGAACCTCGATCACCCCAACCTAGCCGACATACAGGCCCTCTGCCTCCTCATCATCCACGAATGGGGCAC TCGCAATGCCGTTCGCGCCTACATCTACCTCGGCCAGGCAGCCCGCATGTTGCAGATGTACAGGATCCTCAACAG CCATCACGCCTCGGACAGCGCCGATCAGTTCCTCCGCGACGAGTCTCTCCGCCGCACCTTGTGGCTCGTCTACAT CCTCGACTGCCTCCTGACCAGCACCCCTGGTCGCTTCCCGGCTCTGTCGGTTCAGGACACGGCTGATGTGGCCCT GCCTTGCTCCGACATCAACTTTGCCTTTGGCAACGCCGTTCACGTCAAGACGCTGGCCCAGAACCTCGTCGGCTC GTCGGCCGTACCCTCCCCGACCGCCTCGAATGGCCCGGGGACTTGGGGCGAAGTGGGCGAGTTTGGCCACATCGT CCTGGCCGCCACCATCTGGCGCGATGTCGTCGCCATGCTCACCGTCAGCACCTTGCAGGACTTCCGCGAGGAGGC CTGCGCCAGCCTCATTGCCAAGATCGAGGGCCTCCGCGCCTCGCTGCCGATGCAGTTCGTCGACAAGCCAGGCCA GATCAACCTCCACATGACAATGGGCTCGGGCTACACCTTTGCCATGCTGCACTGCCTGTTGCAGTGCGCCACCGT CTTCGTCCAGCGCCGCCGCCTGTTGCAGGAGGTGACGGCCTCGGGCTTTACCCTCGAGTCGTTTCGCATGAGCCC GCGCTGCCACGACATCATCGACCGCCTCTTCACCTCGTGCCACGGCACCATTTCCCTGCTCACGGCCGTCGAGGC CGGCGTGGAAAAGGATCAGGCCACGTGTTTCCCCATCTTCATGCTCTTCTCCTCCTTTACCGCCAGCGCCACCGT CGCCTACCTGTCTCTCAAGGGCCTGACGCCGCCCAACGCGGTCGAGACGGCAGCTCACATCGTCAAGGACGGCCT GCGCTTCATGCACGACGGCACCGAGAACTGGCCTCTTATGACGAGTTGGCTCAGGCACCTGACTGTCATGCAGCG AGTGCTCAACAACGACGCCGCCGCCGCCGCCTCGGGCGGATCGGCCTCTTCGCGTCACGGCTCCAACTCGCACCA CGGCGGCATCAAGGACGAGGCCGAGTCGGAAGCCGATACCAATCCGGACGCCATGGACTACGACCAGGCCAGCGC CAGCGGCGGCGGTGGAGGCGGAGGAGGCGGCAGTGGCGGAGGCGGAGGAGGCGGATCCGGTCAGGTGGAGCCGGC GCCGCGGTCGGTGTCGGAGTCGGGCCGGGAGGACAGCGAGCCGCCGGTGGCGGCGCCGCGCCGGCCGGGGGTGAC GACGATCAACGGAGGGTCCGGCGGCGTGTCGACGCCGGCGACGGCCAACTCTCCGCCGTCGGGCGCGGCACCGCA GGCGTCGATGCAGGCGCAGGACGGCGGCAAGCAACAGAGCCCGGACGTGGTGTCGGTGTCGAACGGCATGGCGCC CAATCAGGAGGGCCAGACGACGAGCCAAGATATGACGGCGCCGGAGCTGTGCCAAGCATTCGAGCGGCAATTGCT GGACCTGGACGACCTGGCGGCCTTTATGGGCGGTGGGGTGTGA |