Fungal Genomics

at Utrecht University

General Properties

Protein ID	Ophio5\|8495
Gene name
Location	scaffold_956:233..1588
Strand	-
Gene length (bp)	1355
Transcript length (bp)	1047
Coding sequence length (bp)	1044
Protein length (aa)	348

PFAM Domains

(None)

Swissprot hits

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
Yes	1 - 22	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label	Description	Expression (RPKM)	Confidence interval (low)	Confidence interval (high)
SC16a	Pure fungal culture	0.67	0.00	1.55
CcL	In ants, during behavior modification	10.96	3.00	18.91
CcD	In ants, recently dead	5.53	1.27	9.79

Differential expression

Label1	Label2	Q-value	Significant difference
SC16a	CcL	0.000286	yes
SC16a	CcD	0.002815	yes
CcL	CcD	0.071402	no

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Ophio5\|8495 MLELIMLLLSVTLCLVPGVISSPPQQPPTTRRLGSWEVERNSEGDPFGLTLEKPRLPSAPRTNSVPLLEPLLFKA TSNQVEVHGESSPRPPTAAIKKTLHPPTVAFCQNSRYRGFCDRVVLTRASYCYQVPRSLRWTVSSIQLINVVGKC WFFKQFNCQDESFDTSDSIGTIWKHHGEFQNNIRSFYCIYPLPLLYQHTRFTGRVFAVDVPLGYCADVPPPFDNA ASSFSIPEDMYRCLLFPAHGCRGDYLEAYEDIAEISAVSTTLNDAIGSILCSPQRREPLLSALLPQFTPEPEPAP APVAELESSSGCVSRECGPVGEIWGYRVPRIHLPPYRQMIPAPRSLLS
Coding	>Ophio5\|8495 ATGCTTGAACTGATTATGCTACTCCTCTCCGTCACGCTTTGCCTCGTGCCGGGCGTGATATCATCTCCGCCTCAA CAGCCGCCCACGACGCGCCGGCTTGGCTCATGGGAGGTGGAGCGCAACTCTGAGGGGGACCCCTTTGGTCTGACG CTTGAAAAACCCCGACTCCCGTCTGCTCCCAGGACGAATTCCGTGCCTCTGCTAGAACCTCTTCTTTTCAAGGCT ACCTCCAACCAAGTCGAAGTACACGGCGAGAGCTCGCCACGACCGCCTACAGCCGCCATCAAAAAAACTCTTCAT CCACCCACTGTCGCCTTTTGCCAGAACTCCCGCTACAGAGGATTTTGCGACCGGGTCGTACTCACCAGGGCCTCG TATTGCTACCAGGTGCCTCGTAGTCTTCGCTGGACTGTTTCGTCGATCCAACTCATCAATGTGGTTGGAAAGTGC TGGTTTTTCAAACAGTTCAACTGCCAGGACGAATCGTTCGACACTTCCGACAGCATTGGGACCATCTGGAAACAC CATGGAGAGTTTCAAAACAATATTCGCTCCTTCTATTGCATATATCCCCTGCCTTTACTCTACCAGCACACCAGG TTCACTGGTCGCGTTTTTGCCGTCGACGTGCCTTTAGGGTACTGCGCCGACGTGCCTCCCCCTTTCGACAATGCT GCGTCGTCGTTCAGCATCCCGGAAGATATGTATAGGTGCTTATTGTTTCCAGCTCATGGCTGCCGAGGGGATTAC CTCGAAGCGTATGAGGACATTGCGGAAATCTCCGCTGTGAGCACGACACTCAATGACGCCATCGGATCCATCCTA TGCTCACCGCAAAGGCGCGAGCCGCTATTGTCCGCGCTGCTGCCGCAATTCACGCCTGAACCAGAACCGGCGCCG GCGCCCGTTGCCGAGCTCGAATCGTCGTCAGGCTGTGTGAGTAGGGAATGCGGGCCTGTGGGAGAAATCTGGGGT TACAGAGTCCCGCGAATTCATCTCCCACCCTATCGACAGATGATTCCCGCTCCCAGATCTCTGCTGTCG
Transcript	>Ophio5\|8495 ATGCTTGAACTGATTATGCTACTCCTCTCCGTCACGCTTTGCCTCGTGCCGGGCGTGATATCATCTCCGCCTCAA CAGCCGCCCACGACGCGCCGGCTTGGCTCATGGGAGGTGGAGCGCAACTCTGAGGGGGACCCCTTTGGTCTGACG CTTGAAAAACCCCGACTCCCGTCTGCTCCCAGGACGAATTCCGTGCCTCTGCTAGAACCTCTTCTTTTCAAGGCT ACCTCCAACCAAGTCGAAGTACACGGCGAGAGCTCGCCACGACCGCCTACAGCCGCCATCAAAAAAACTCTTCAT CCACCCACTGTCGCCTTTTGCCAGAACTCCCGCTACAGAGGATTTTGCGACCGGGTCGTACTCACCAGGGCCTCG TATTGCTACCAGGTGCCTCGTAGTCTTCGCTGGACTGTTTCGTCGATCCAACTCATCAATGTGGTTGGAAAGTGC TGGTTTTTCAAACAGTTCAACTGCCAGGACGAATCGTTCGACACTTCCGACAGCATTGGGACCATCTGGAAACAC CATGGAGAGTTTCAAAACAATATTCGCTCCTTCTATTGCATATATCCCCTGCCTTTACTCTACCAGCACACCAGG TTCACTGGTCGCGTTTTTGCCGTCGACGTGCCTTTAGGGTACTGCGCCGACGTGCCTCCCCCTTTCGACAATGCT GCGTCGTCGTTCAGCATCCCGGAAGATATGTATAGGTGCTTATTGTTTCCAGCTCATGGCTGCCGAGGGGATTAC CTCGAAGCGTATGAGGACATTGCGGAAATCTCCGCTGTGAGCACGACACTCAATGACGCCATCGGATCCATCCTA TGCTCACCGCAAAGGCGCGAGCCGCTATTGTCCGCGCTGCTGCCGCAATTCACGCCTGAACCAGAACCGGCGCCG GCGCCCGTTGCCGAGCTCGAATCGTCGTCAGGCTGTGTGAGTAGGGAATGCGGGCCTGTGGGAGAAATCTGGGGT TACAGAGTCCCGCGAATTCATCTCCCACCCTATCGACAGATGATTCCCGCTCCCAGATCTCTGCTGTCGTGA
Gene	>Ophio5\|8495 ATGCTTGAACTGATTATGCTACTCCTCTCCGTCACGCTTTGCCTCGTGCCGGGCGTGATATCATCTCCGCCTCAA CAGCCGCCCACGACGCGCCGGCTTGGCTCATGGGAGGTGGAGCGCAACTCTGAGGGGGACCCCTTTGGTCTGACG CTTGAAAAACCCCGACTCCCGTCTGCTCCCAGGACGAATTCCGTGCCTCTGCTAGAACCTCTTCTTTTCAAGGCT ACCTCCAACCAAGTCGAAGTACACGGCGAGAGCTCGCCACGACCGCCTACAGCCGCCATCAAAAAAACTCTTCAT CCACCCACTGTCGCCTTTTGCCAGAACTCCCGCTACAGAGGATTTTGCGACCGGGTCGTACTCACCAGGGCCTCG TATTGCTGTTTGTTTCCCCCCATCCCCACCCCTTGCTGGTTGGTTAGTCTTGGCTAATGGGTAGCTCGCTTCAAA AGACCAGGTGCCTCGTAGTCTTCGCTGGACTGTTTCGTCGATCCAACTCATCAATGTGGTTGGAAAGTGCTGGTT TTTCAAGTATGAGATTGCTTCTTTAATATCCTGAAGCTCGTCGTGAATCTGACATGGAAGCGTTATTCTTCCTTC TTTAGACAGTTCAACTGCCAGGACGAATCGTTCGACACTTCCGACAGCATTGGGACCATCTGGAAACACCATGGA GAGTTTCAAAACAATATTCGCTCCTTCTATTGCATATATCCCCTGCCTTTACTCTACCAGCACACCAGGTTCACT GGTCGCGTTTTTGCCGTCGACGTGCCTTTAGGGTACTGCGGTGAGTCGTGCTTATTCTCCTTCTTCTTCTTCTTT CTCGACCCCTTCGCCATCCTAACACACCAAACCATTCCACCGTTATTCCACTGACCGCTCTTCGCAGCCGACGTG CCTCCCCCTTTCGACAATGCTGCGTCGTCGTTCAGCATCCCGGAAGATATGTATAGGTGCTTATTGTTTCCGTAA GCCGCTCATTTTTCTCCTCATGGCTGGCCATGGTAAACTGAACCGCGTCTTTTTATAGAGCTCATGGCTGCCGAG GGGATTACCTCGAAGCGTATGAGGACATTGCGGAAATCTCCGCTGTGAGCACGACACTCAATGACGCCATCGGAT CCATCCTATGCTCACCGCAAAGGCGCGAGCCGCTATTGTCCGCGCTGCTGCCGCAATTCACGCCTGAACCAGAAC CGGCGCCGGCGCCCGTTGCCGAGCTCGAATCGTCGTCAGGCTGTGTGAGTAGGGAATGCGGGCCTGTGGGAGAAA TCTGGGGTTACAGAGTCCCGCGAATTCATCTCCCACCCTATCGACAGATGATTCCCGCTCCCAGATCTCTGCTGT CGTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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