© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|8433 |
| Gene name | |
| Location | scaffold_94:13698..14320 |
| Strand | + |
| Gene length (bp) | 622 |
| Transcript length (bp) | 567 |
| Coding sequence length (bp) | 564 |
| Protein length (aa) | 188 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF17254 | DUF5321 | Family of unknown function (DUF5321) | 8.8E-51 | 33 | 175 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 12 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 72 | 91 | 19 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 46.97 | 20.46 | 73.49 |
| CcL | In ants, during behavior modification | 51.64 | 22.64 | 80.63 |
| CcD | In ants, recently dead | 74.14 | 35.29 | 113.00 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.778904 | no |
| SC16a | CcD | 0.091893 | no |
| CcL | CcD | 0.198272 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|8433 MILSRCAIRARALIRKQSQFQLPVEQRFCRYSSAPATVVDVGFWKSLVPKAWRGERQNDELRPKSKGWNPATYFI IMFLFIGSMSIQMIVLHKQSEQDARRSAVKIALLREIVEKIRKGEKVDVEKALGTGDAEREANWEEVLRQIERDE TRRKPPKPSEAGEKAYEQGAAPETQPVRKRTAGIDGFF |
| Coding | >Ophio5|8433 ATGATACTATCGAGATGCGCTATTCGGGCTAGAGCCCTGATTCGGAAGCAGTCGCAGTTTCAGCTACCCGTCGAA CAGCGATTCTGCCGATACAGTAGCGCTCCGGCCACTGTCGTCGATGTCGGCTTCTGGAAGTCGCTGGTCCCCAAG GCGTGGCGTGGGGAGAGACAGAATGACGAACTGCGACCCAAATCCAAGGGGTGGAACCCAGCGACGTATTTTATC ATCATGTTTCTCTTCATCGGCTCCATGTCGATCCAGATGATTGTCCTGCACAAGCAAAGCGAGCAGGACGCGCGC CGGTCGGCCGTCAAGATAGCGCTGTTACGGGAGATTGTCGAAAAGATACGTAAGGGGGAAAAGGTTGACGTCGAG AAAGCGCTGGGCACGGGCGATGCCGAGAGAGAGGCCAACTGGGAAGAAGTGCTGCGACAGATTGAGCGCGACGAG ACGCGGCGCAAGCCACCGAAGCCATCCGAGGCGGGCGAGAAAGCCTACGAGCAGGGCGCCGCACCTGAAACGCAG CCCGTCAGGAAGAGGACGGCCGGTATTGACGGCTTTTTC |
| Transcript | >Ophio5|8433 ATGATACTATCGAGATGCGCTATTCGGGCTAGAGCCCTGATTCGGAAGCAGTCGCAGTTTCAGCTACCCGTCGAA CAGCGATTCTGCCGATACAGTAGCGCTCCGGCCACTGTCGTCGATGTCGGCTTCTGGAAGTCGCTGGTCCCCAAG GCGTGGCGTGGGGAGAGACAGAATGACGAACTGCGACCCAAATCCAAGGGGTGGAACCCAGCGACGTATTTTATC ATCATGTTTCTCTTCATCGGCTCCATGTCGATCCAGATGATTGTCCTGCACAAGCAAAGCGAGCAGGACGCGCGC CGGTCGGCCGTCAAGATAGCGCTGTTACGGGAGATTGTCGAAAAGATACGTAAGGGGGAAAAGGTTGACGTCGAG AAAGCGCTGGGCACGGGCGATGCCGAGAGAGAGGCCAACTGGGAAGAAGTGCTGCGACAGATTGAGCGCGACGAG ACGCGGCGCAAGCCACCGAAGCCATCCGAGGCGGGCGAGAAAGCCTACGAGCAGGGCGCCGCACCTGAAACGCAG CCCGTCAGGAAGAGGACGGCCGGTATTGACGGCTTTTTCTGA |
| Gene | >Ophio5|8433 ATGATACTATCGAGATGCGCTATTCGGGCTAGAGCCCTGATTCGGAAGCAGTCGCAGTTTCAGCTACCCGTCGAA CAGCGATTCTGCCGATACAGTAGCGCTCCGGCCACTGTCGTCGATGTCGGCTTCTGGAAGTCGCTGGTCCCCAAG GCGTGGCGTGGGGAGAGACAGAATGACGAACTGCGACCCAAATCCAAGGGGTGGAACCCAGCGACGTATTTTATC ATCATGTTTCTCTTCATCGGCTCCATGTCGATCCAGATGATTGTCCTGCACAAGCAAAGCGAGCAGGACGCGCGC CGGTCGGCCGTCAAGATAGCGCTGTTACGGGAGATTGTCGAAAAGATACGTAAGGGGGAAAAGGTTGACGTCGAG AAAGCGCTGGGCACGGGCGATGCCGAGAGAGAGGCCAACTGGGAAGAAGGTAAGTTGCCACGAAGGGGAAACGGT CGGCCTCCCTCACTAAGAGGGGTCGACAGTGCTGCGACAGATTGAGCGCGACGAGACGCGGCGCAAGCCACCGAA GCCATCCGAGGCGGGCGAGAAAGCCTACGAGCAGGGCGCCGCACCTGAAACGCAGCCCGTCAGGAAGAGGACGGC CGGTATTGACGGCTTTTTCTGA |