Protein ID | Ophio5|8427 |
Gene name | |
Location | scaffold_934:3983..4650 |
Strand | + |
Gene length (bp) | 667 |
Transcript length (bp) | 576 |
Coding sequence length (bp) | 573 |
Protein length (aa) | 191 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF04145 | Ctr | Ctr copper transporter family | 1.2E-34 | 28 | 181 |
GO Term | Description | Terminal node |
---|---|---|
GO:0005375 | copper ion transmembrane transporter activity | Yes |
GO:0016021 | integral component of membrane | Yes |
GO:0035434 | copper ion transmembrane transport | Yes |
GO:0000041 | transition metal ion transport | No |
GO:0008150 | biological_process | No |
GO:0098655 | cation transmembrane transport | No |
GO:0031224 | intrinsic component of membrane | No |
GO:0046915 | transition metal ion transmembrane transporter activity | No |
GO:0051234 | establishment of localization | No |
GO:0098662 | inorganic cation transmembrane transport | No |
GO:0022857 | transmembrane transporter activity | No |
GO:0006810 | transport | No |
GO:0051179 | localization | No |
GO:0003674 | molecular_function | No |
GO:0034220 | ion transmembrane transport | No |
GO:0005215 | transporter activity | No |
GO:0055085 | transmembrane transport | No |
GO:0006811 | ion transport | No |
GO:0015318 | inorganic molecular entity transmembrane transporter activity | No |
GO:0022890 | inorganic cation transmembrane transporter activity | No |
GO:0015075 | ion transmembrane transporter activity | No |
GO:0110165 | cellular anatomical entity | No |
GO:0009987 | cellular process | No |
GO:0006825 | copper ion transport | No |
GO:0030001 | metal ion transport | No |
GO:0005575 | cellular_component | No |
GO:0046873 | metal ion transmembrane transporter activity | No |
GO:0008324 | cation transmembrane transporter activity | No |
GO:0098660 | inorganic ion transmembrane transport | No |
GO:0006812 | cation transport | No |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Lysosome/Vacuole | Signal peptide|Transmembrane domain | 0.1301 | 0.166 | 0.025 | 0.1483 | 0.044 | 0.004 | 0.4472 | 0.4678 | 0.2613 | 0.0133 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 48 | 70 | 22 |
2 | 155 | 177 | 22 |
Orthofinder run ID | 4 |
Orthogroup | 5912 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Ophio5|8427 MPSLEPRHQGHDDAAMAEGSMGAMMMSMVFQNNIQTPLYANSWTPRSAGAYAGTCIFLVILAIVARLLLAARGFQ EARWQDGDARRRYVASPAKSSLADRLAASPDAKQMTLSENGVEENVVVVARSGSPPRPWRFSVDPLRALFDTVIA GVGYLLMLAVMTMNLGYFLSVLAGVFVGSLAVGRFSTWAEH |
Coding | >Ophio5|8427 ATGCCTTCTCTCGAACCACGTCACCAAGGCCACGACGACGCGGCCATGGCCGAAGGCTCAATGGGCGCCATGATG ATGTCCATGGTTTTCCAGAACAACATCCAGACGCCGCTGTACGCCAACTCGTGGACACCACGCAGCGCCGGTGCC TACGCCGGAACCTGCATCTTCCTCGTCATTCTCGCCATCGTCGCTCGCCTGCTCCTCGCCGCCCGCGGATTTCAG GAGGCTAGGTGGCAGGATGGCGACGCGAGACGTCGCTATGTCGCTTCGCCCGCCAAGTCGTCGCTCGCAGACCGC TTGGCCGCCTCGCCGGATGCCAAGCAGATGACGCTCTCGGAGAATGGCGTCGAGGAGAATGTCGTCGTCGTTGCC CGGAGTGGTTCTCCTCCGAGGCCGTGGCGCTTTAGTGTTGATCCTCTGCGGGCTTTGTTTGATACCGTCATTGCT GGCGTCGGGTACCTTCTCATGTTGGCCGTCATGACCATGAACCTCGGCTACTTCTTGTCCGTTCTGGCCGGCGTC TTCGTCGGCAGTCTCGCCGTCGGCCGCTTCAGCACCTGGGCCGAGCAC |
Transcript | >Ophio5|8427 ATGCCTTCTCTCGAACCACGTCACCAAGGCCACGACGACGCGGCCATGGCCGAAGGCTCAATGGGCGCCATGATG ATGTCCATGGTTTTCCAGAACAACATCCAGACGCCGCTGTACGCCAACTCGTGGACACCACGCAGCGCCGGTGCC TACGCCGGAACCTGCATCTTCCTCGTCATTCTCGCCATCGTCGCTCGCCTGCTCCTCGCCGCCCGCGGATTTCAG GAGGCTAGGTGGCAGGATGGCGACGCGAGACGTCGCTATGTCGCTTCGCCCGCCAAGTCGTCGCTCGCAGACCGC TTGGCCGCCTCGCCGGATGCCAAGCAGATGACGCTCTCGGAGAATGGCGTCGAGGAGAATGTCGTCGTCGTTGCC CGGAGTGGTTCTCCTCCGAGGCCGTGGCGCTTTAGTGTTGATCCTCTGCGGGCTTTGTTTGATACCGTCATTGCT GGCGTCGGGTACCTTCTCATGTTGGCCGTCATGACCATGAACCTCGGCTACTTCTTGTCCGTTCTGGCCGGCGTC TTCGTCGGCAGTCTCGCCGTCGGCCGCTTCAGCACCTGGGCCGAGCACTAA |
Gene | >Ophio5|8427 ATGCCTTCTCTCGAACCACGTCACCAAGGCCACGACGACGCGGCCATGGCCGAAGGCTCAATGGGCGCCATGATG ATGTCCATGGTTTTCCAGAACAACATCCAGACGCCGCTGTACGCCAACTCGTGGACACCACGCAGCGCCGGTGCC TACGCCGGAACCTGCATCTTCCTCGTCATTCTCGCCATCGTCGCTCGCCTGCTCCTCGCCGCCCGCGGATTTCAG GAGGCTAGGTGGCAGGATGGCGACGCGAGACGTCGCTATGTCGCTTCGCCCGCCAAGTCGTCGCTCGCAGACCGC TTGGCCGCCTCGCCGGATGCCAAGCAGATGACGCTCTCGGAGAATGGCGTCGAGGAGAATGTCGTCGTCGTTGCC CGGAGTGGTTCTCCTCCGAGGCCGTGGCGCTTTAGTGTTGATCCTCTGCGGGCTTTGTTTGATACCGTCATTGCT GGCGTCGGGTACCTTCTGTGAGTTGCCCTCTTCTTTCTCTCACTTTCTCTCTTTTTCTCTCTCCATATATATATA CATACATATGTTCCGAGGCTAACGGAATTGTAGCATGTTGGCCGTCATGACCATGAACCTCGGCTACTTCTTGTC CGTTCTGGCCGGCGTCTTCGTCGGCAGTCTCGCCGTCGGCCGCTTCAGCACCTGGGCCGAGCACTAA |