Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|8427
Gene name
Locationscaffold_934:3983..4650
Strand+
Gene length (bp)667
Transcript length (bp)576
Coding sequence length (bp)573
Protein length (aa) 191

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF04145 Ctr Ctr copper transporter family 1.2E-34 28 181

Swissprot hits

(None)

GO

GO Term Description Terminal node
GO:0005375 copper ion transmembrane transporter activity Yes
GO:0016021 integral component of membrane Yes
GO:0035434 copper ion transmembrane transport Yes
GO:0000041 transition metal ion transport No
GO:0008150 biological_process No
GO:0098655 cation transmembrane transport No
GO:0031224 intrinsic component of membrane No
GO:0046915 transition metal ion transmembrane transporter activity No
GO:0051234 establishment of localization No
GO:0098662 inorganic cation transmembrane transport No
GO:0022857 transmembrane transporter activity No
GO:0006810 transport No
GO:0051179 localization No
GO:0003674 molecular_function No
GO:0034220 ion transmembrane transport No
GO:0005215 transporter activity No
GO:0055085 transmembrane transport No
GO:0006811 ion transport No
GO:0015318 inorganic molecular entity transmembrane transporter activity No
GO:0022890 inorganic cation transmembrane transporter activity No
GO:0015075 ion transmembrane transporter activity No
GO:0110165 cellular anatomical entity No
GO:0009987 cellular process No
GO:0006825 copper ion transport No
GO:0030001 metal ion transport No
GO:0005575 cellular_component No
GO:0046873 metal ion transmembrane transporter activity No
GO:0008324 cation transmembrane transporter activity No
GO:0098660 inorganic ion transmembrane transport No
GO:0006812 cation transport No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 23 0.5

Transmembrane Domains

Domain # Start End Length
1 48 70 22
2 155 177 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Click here for more information

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|8427
MPSLEPRHQGHDDAAMAEGSMGAMMMSMVFQNNIQTPLYANSWTPRSAGAYAGTCIFLVILAIVARLLLAARGFQ
EARWQDGDARRRYVASPAKSSLADRLAASPDAKQMTLSENGVEENVVVVARSGSPPRPWRFSVDPLRALFDTVIA
GVGYLLMLAVMTMNLGYFLSVLAGVFVGSLAVGRFSTWAEH
Coding >Ophio5|8427
ATGCCTTCTCTCGAACCACGTCACCAAGGCCACGACGACGCGGCCATGGCCGAAGGCTCAATGGGCGCCATGATG
ATGTCCATGGTTTTCCAGAACAACATCCAGACGCCGCTGTACGCCAACTCGTGGACACCACGCAGCGCCGGTGCC
TACGCCGGAACCTGCATCTTCCTCGTCATTCTCGCCATCGTCGCTCGCCTGCTCCTCGCCGCCCGCGGATTTCAG
GAGGCTAGGTGGCAGGATGGCGACGCGAGACGTCGCTATGTCGCTTCGCCCGCCAAGTCGTCGCTCGCAGACCGC
TTGGCCGCCTCGCCGGATGCCAAGCAGATGACGCTCTCGGAGAATGGCGTCGAGGAGAATGTCGTCGTCGTTGCC
CGGAGTGGTTCTCCTCCGAGGCCGTGGCGCTTTAGTGTTGATCCTCTGCGGGCTTTGTTTGATACCGTCATTGCT
GGCGTCGGGTACCTTCTCATGTTGGCCGTCATGACCATGAACCTCGGCTACTTCTTGTCCGTTCTGGCCGGCGTC
TTCGTCGGCAGTCTCGCCGTCGGCCGCTTCAGCACCTGGGCCGAGCAC
Transcript >Ophio5|8427
ATGCCTTCTCTCGAACCACGTCACCAAGGCCACGACGACGCGGCCATGGCCGAAGGCTCAATGGGCGCCATGATG
ATGTCCATGGTTTTCCAGAACAACATCCAGACGCCGCTGTACGCCAACTCGTGGACACCACGCAGCGCCGGTGCC
TACGCCGGAACCTGCATCTTCCTCGTCATTCTCGCCATCGTCGCTCGCCTGCTCCTCGCCGCCCGCGGATTTCAG
GAGGCTAGGTGGCAGGATGGCGACGCGAGACGTCGCTATGTCGCTTCGCCCGCCAAGTCGTCGCTCGCAGACCGC
TTGGCCGCCTCGCCGGATGCCAAGCAGATGACGCTCTCGGAGAATGGCGTCGAGGAGAATGTCGTCGTCGTTGCC
CGGAGTGGTTCTCCTCCGAGGCCGTGGCGCTTTAGTGTTGATCCTCTGCGGGCTTTGTTTGATACCGTCATTGCT
GGCGTCGGGTACCTTCTCATGTTGGCCGTCATGACCATGAACCTCGGCTACTTCTTGTCCGTTCTGGCCGGCGTC
TTCGTCGGCAGTCTCGCCGTCGGCCGCTTCAGCACCTGGGCCGAGCACTAA
Gene >Ophio5|8427
ATGCCTTCTCTCGAACCACGTCACCAAGGCCACGACGACGCGGCCATGGCCGAAGGCTCAATGGGCGCCATGATG
ATGTCCATGGTTTTCCAGAACAACATCCAGACGCCGCTGTACGCCAACTCGTGGACACCACGCAGCGCCGGTGCC
TACGCCGGAACCTGCATCTTCCTCGTCATTCTCGCCATCGTCGCTCGCCTGCTCCTCGCCGCCCGCGGATTTCAG
GAGGCTAGGTGGCAGGATGGCGACGCGAGACGTCGCTATGTCGCTTCGCCCGCCAAGTCGTCGCTCGCAGACCGC
TTGGCCGCCTCGCCGGATGCCAAGCAGATGACGCTCTCGGAGAATGGCGTCGAGGAGAATGTCGTCGTCGTTGCC
CGGAGTGGTTCTCCTCCGAGGCCGTGGCGCTTTAGTGTTGATCCTCTGCGGGCTTTGTTTGATACCGTCATTGCT
GGCGTCGGGTACCTTCTGTGAGTTGCCCTCTTCTTTCTCTCACTTTCTCTCTTTTTCTCTCTCCATATATATATA
CATACATATGTTCCGAGGCTAACGGAATTGTAGCATGTTGGCCGTCATGACCATGAACCTCGGCTACTTCTTGTC
CGTTCTGGCCGGCGTCTTCGTCGGCAGTCTCGCCGTCGGCCGCTTCAGCACCTGGGCCGAGCACTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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