Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|8411
Gene name
Locationscaffold_93:38736..39428
Strand-
Gene length (bp)692
Transcript length (bp)417
Coding sequence length (bp)414
Protein length (aa) 138

Your browser does not support drawing a protein figure.

PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF04178 Got1 Got1/Sft2-like family 1.7E-14 16 114

Swissprot hits

[Show all]
Swissprot ID Swissprot Description Start End E-value
sp|Q03554|GOT1_YEAST Protein transport protein GOT1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GOT1 PE=1 SV=1 3 128 4.0E-29
sp|Q9DCQ3|GOT1A_MOUSE Vesicle transport protein GOT1A OS=Mus musculus GN=Golt1a PE=2 SV=1 5 127 1.0E-21
sp|Q20263|GOT1_CAEEL Probable Golgi transport protein 1 OS=Caenorhabditis elegans GN=F41C3.4 PE=3 SV=2 1 114 4.0E-21
sp|Q9USJ2|GOT1_SCHPO Protein transport protein got1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=got1 PE=3 SV=1 3 125 2.0E-20
sp|Q54CL4|GOT1_DICDI Protein transport protein got1 homolog OS=Dictyostelium discoideum GN=golt1 PE=3 SV=1 6 137 1.0E-19
[Show all]
[Show less]
Swissprot ID Swissprot Description Start End E-value
sp|Q03554|GOT1_YEAST Protein transport protein GOT1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GOT1 PE=1 SV=1 3 128 4.0E-29
sp|Q9DCQ3|GOT1A_MOUSE Vesicle transport protein GOT1A OS=Mus musculus GN=Golt1a PE=2 SV=1 5 127 1.0E-21
sp|Q20263|GOT1_CAEEL Probable Golgi transport protein 1 OS=Caenorhabditis elegans GN=F41C3.4 PE=3 SV=2 1 114 4.0E-21
sp|Q9USJ2|GOT1_SCHPO Protein transport protein got1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=got1 PE=3 SV=1 3 125 2.0E-20
sp|Q54CL4|GOT1_DICDI Protein transport protein got1 homolog OS=Dictyostelium discoideum GN=golt1 PE=3 SV=1 6 137 1.0E-19
sp|Q6ZVE7|GOT1A_HUMAN Vesicle transport protein GOT1A OS=Homo sapiens GN=GOLT1A PE=2 SV=1 5 127 4.0E-19
sp|Q2NKV8|GOT1A_BOVIN Vesicle transport protein GOT1A OS=Bos taurus GN=GOLT1A PE=2 SV=1 5 127 2.0E-18
sp|Q9Y3E0|GOT1B_HUMAN Vesicle transport protein GOT1B OS=Homo sapiens GN=GOLT1B PE=1 SV=1 5 128 3.0E-18
sp|Q2YDE3|GOT1B_BOVIN Vesicle transport protein GOT1B OS=Bos taurus GN=GOLT1B PE=2 SV=1 5 128 3.0E-18
sp|Q9CR60|GOT1B_MOUSE Vesicle transport protein GOT1B OS=Mus musculus GN=Golt1b PE=1 SV=1 5 128 4.0E-18
[Show less]

GO

GO Term Description Terminal node
GO:0016192 vesicle-mediated transport Yes
GO:0051234 establishment of localization No
GO:0006810 transport No
GO:0051179 localization No
GO:0008150 biological_process No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 11 0.5

Transmembrane Domains

Domain # Start End Length
1 12 31 19
2 36 58 22
3 70 92 22
4 102 124 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Click here for more information

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|8411
MSMWLSDTQKIGVVFCSGGGLFLIGGVMLFFDRAMLAMGNILFLIGLTIIIGPQKTMLFFARKQKAKGTVAFFAG
LGLILARWTLVGFLVEAYGIAVLFGDFIGTIAGFARGLPVIGPYIGLLVDKIGLGRRNAELPV
Coding >Ophio5|8411
ATGTCTATGTGGCTTTCAGACACCCAGAAGATTGGCGTCGTCTTCTGCTCCGGTGGAGGCTTGTTTCTCATCGGC
GGCGTCATGCTGTTCTTTGATCGCGCAATGCTCGCAATGGGAAACATACTGTTTCTCATTGGCCTGACCATCATC
ATTGGTCCGCAAAAGACGATGCTTTTCTTCGCGCGAAAGCAAAAGGCCAAGGGCACAGTCGCCTTCTTCGCCGGC
CTCGGCCTCATCCTGGCGCGGTGGACACTAGTCGGCTTCCTCGTCGAGGCGTACGGCATCGCCGTTCTCTTCGGC
GACTTTATCGGTACCATCGCCGGCTTCGCACGTGGTCTGCCCGTCATTGGTCCCTACATCGGCCTGCTGGTAGAC
AAGATCGGGCTCGGACGCAGAAACGCAGAGCTGCCTGTA
Transcript >Ophio5|8411
ATGTCTATGTGGCTTTCAGACACCCAGAAGATTGGCGTCGTCTTCTGCTCCGGTGGAGGCTTGTTTCTCATCGGC
GGCGTCATGCTGTTCTTTGATCGCGCAATGCTCGCAATGGGAAACATACTGTTTCTCATTGGCCTGACCATCATC
ATTGGTCCGCAAAAGACGATGCTTTTCTTCGCGCGAAAGCAAAAGGCCAAGGGCACAGTCGCCTTCTTCGCCGGC
CTCGGCCTCATCCTGGCGCGGTGGACACTAGTCGGCTTCCTCGTCGAGGCGTACGGCATCGCCGTTCTCTTCGGC
GACTTTATCGGTACCATCGCCGGCTTCGCACGTGGTCTGCCCGTCATTGGTCCCTACATCGGCCTGCTGGTAGAC
AAGATCGGGCTCGGACGCAGAAACGCAGAGCTGCCTGTATGA
Gene >Ophio5|8411
ATGTCTATGTGGCTTTCAGACACCCAGAGTACGGCTCATCCAATCTCTCTCGTCTGGGGTCCGCCGCACGAACGC
TGATGAATATTCTTTCCTTTTCGACAGAGATTGGCGTCGTCTTCTGCTCCGGTGGTGCGTCGTCGTCTTTTCCCC
CCCTTCCCAGCATATCTGCGCGCAATCGCGAGCTGACCCTCGACTGCGCGCACAGGAGGCTTGTTTCTCATCGGC
GGCGTCATGCTGTTCTTTGATCGCGCAATGTACGTGACTTCACCTCTTCTTCCCCTTTTTCCTCCTTCGTTGCTG
CTGACCCGTCGTTTCTTTCAGGCTCGCAATGGGAAACGTAATCGTTACCTCCTCCTTCAACCGCCGTCGTCGACG
CTAAGCGCACCGCGCCGCAGATACTGTTTCTCATTGGCCTGACCATCATCATTGGTCCGCAAAAGACGATGCTTT
TCTTCGCGCGAAAGCAAAAGGCCAAGGGCACAGTCGCCTTCTTCGCCGGCCTCGGCCTCATCCTGGCGCGGTGGA
CACTAGTCGGCTTCCTCGTCGAGGCGTACGGCATCGCCGTTCTCTTCGGCGACTTTATCGGTACCATCGCCGGCT
TCGCACGTGGTCTGCCCGTCATTGGTCCCTACATCGGCCTGCTGGTAGACAAGATCGGGCTCGGACGCAGAAACG
CAGAGCTGCCTGTATGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail