Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|8392
Gene name
Locationscaffold_925:2973..5355
Strand+
Gene length (bp)2382
Transcript length (bp)2118
Coding sequence length (bp)2115
Protein length (aa) 705

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00172 Zn_clus Fungal Zn(2)-Cys(6) binuclear cluster domain 9.7E-06 2 31
PF00172 Zn_clus Fungal Zn(2)-Cys(6) binuclear cluster domain 1.5E-06 49 81
PF04082 Fungal_trans Fungal specific transcription factor domain 1.8E-10 161 351

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|Q1MTM9|YFN1_SCHPO Uncharacterized transcriptional regulatory protein C1327.01c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC1327.01c PE=1 SV=2 171 471 2.0E-29
sp|O59746|YN2B_SCHPO Uncharacterized transcriptional regulatory protein C530.11c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC530.11c PE=1 SV=1 147 577 4.0E-23
sp|Q9HDX1|YKN4_SCHPO Uncharacterized transcriptional regulatory protein PB1A11.04c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAPB1A11.04c PE=3 SV=1 49 489 4.0E-17

GO

GO Term Description Terminal node
GO:0006351 transcription, DNA-templated Yes
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific Yes
GO:0006355 regulation of transcription, DNA-templated Yes
GO:0008270 zinc ion binding Yes
GO:0003677 DNA binding Yes
GO:0003676 nucleic acid binding No
GO:0019219 regulation of nucleobase-containing compound metabolic process No
GO:0003674 molecular_function No
GO:0044237 cellular metabolic process No
GO:0043169 cation binding No
GO:0043167 ion binding No
GO:0008152 metabolic process No
GO:0006139 nucleobase-containing compound metabolic process No
GO:1901576 organic substance biosynthetic process No
GO:0010468 regulation of gene expression No
GO:0046872 metal ion binding No
GO:0046483 heterocycle metabolic process No
GO:0051171 regulation of nitrogen compound metabolic process No
GO:0065007 biological regulation No
GO:0090304 nucleic acid metabolic process No
GO:0044238 primary metabolic process No
GO:0031323 regulation of cellular metabolic process No
GO:0140110 transcription regulator activity No
GO:0050794 regulation of cellular process No
GO:0019222 regulation of metabolic process No
GO:0018130 heterocycle biosynthetic process No
GO:0060255 regulation of macromolecule metabolic process No
GO:0006725 cellular aromatic compound metabolic process No
GO:0008150 biological_process No
GO:1901360 organic cyclic compound metabolic process No
GO:0097159 organic cyclic compound binding No
GO:0009058 biosynthetic process No
GO:0044249 cellular biosynthetic process No
GO:0034641 cellular nitrogen compound metabolic process No
GO:0051252 regulation of RNA metabolic process No
GO:0031326 regulation of cellular biosynthetic process No
GO:0006807 nitrogen compound metabolic process No
GO:1901362 organic cyclic compound biosynthetic process No
GO:0010556 regulation of macromolecule biosynthetic process No
GO:0046914 transition metal ion binding No
GO:2001141 regulation of RNA biosynthetic process No
GO:1903506 regulation of nucleic acid-templated transcription No
GO:0003700 DNA-binding transcription factor activity No
GO:0050789 regulation of biological process No
GO:0019438 aromatic compound biosynthetic process No
GO:0034654 nucleobase-containing compound biosynthetic process No
GO:0016070 RNA metabolic process No
GO:0097659 nucleic acid-templated transcription No
GO:0009889 regulation of biosynthetic process No
GO:0009059 macromolecule biosynthetic process No
GO:0080090 regulation of primary metabolic process No
GO:1901363 heterocyclic compound binding No
GO:0044271 cellular nitrogen compound biosynthetic process No
GO:0032774 RNA biosynthetic process No
GO:0009987 cellular process No
GO:0043170 macromolecule metabolic process No
GO:0005488 binding No
GO:0071704 organic substance metabolic process No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 18 0.45

Transmembrane Domains

(None)

Transcription Factor Class

Transcription Factor Class
(based on PFAM domains)
Fungal Specific TF

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
SC16a Pure fungal culture 22.39 11.50 33.29
CcL In ants, during behavior modification 27.13 13.07 41.18
CcD In ants, recently dead 19.41 9.48 29.35

Differential expression

Label1 Label2 Q-value Significant difference
SC16a CcL 0.487424 no
SC16a CcD 0.608678 no
CcL CcD 0.199531 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|8392
MGCRVCRARKVKCDGRPDGCRNCERLQLDCDDGCRGGGNDSLRRMRTYRSCQNCRLSKTKCSGSRPRCTRCVAKD
MDCLYDGEASPRWASSLGRRDEDASLPVADGPESPVVPVPESESPAAAPDPRRGAAPEPDDKVENQLSWLLSPEL
PTGRNVRRVVEQYFVNVHPLRCFAFVHKPSFMHQLDKGLGSDDESALLHIVCAHGARFLVLGHCLDGHVATPALV
RSAGHQWAKRAEFLMLANFGRISMPRLMVAILLHDYYLGAGEYGQALMLSGLAVRMAYALKINQEYNADVLCSEP
EPEPGAPSVASRESRRRLMWACYVLDAGAGSGADLLRESDIKIQLPCNERNFGLRIPAVTETLAVGHVLQFLAPA
VVPRRPAANMGIMAYYIRLVALWKRIVRCAGLGLGHGQPDSALAALDADLLLWRRELPDFVEYSTETIYARLDSN
QLGALVLIHCTYHHNHLELYRVAMPDLFKLASLPAEQRQALQAAQAGCYHHARRISDIVTDAAEHGVRFLSDSQL
PFFLYHSSRVMLYYVARLLDPARPGAEAKMREAVEAVESNSRVLRLMAILFPMAQSLSATTDRWLSKVQQTVGRD
ELVLLPPLSPPRPGAGDESESRPAGWSTVNPNAGGWDGTSPGPPSGPRRASCSLEHERPVAALCEALDLDDLLSW
DLYGISTEMGEGVCNDEMDDCVSQSWTGAI
Coding >Ophio5|8392
ATGGGCTGTCGCGTCTGTCGAGCAAGAAAGGTCAAGTGCGACGGCCGGCCCGACGGCTGCCGCAATTGCGAGCGC
CTTCAGCTCGATTGCGATGACGGCTGTCGAGGTGGAGGCAACGACTCGCTGCGCAGGATGCGAACCTATCGCTCG
TGCCAGAACTGTCGGCTCAGCAAGACCAAATGCAGCGGTAGTCGTCCGCGATGTACTCGCTGCGTGGCAAAGGAC
ATGGACTGCCTATACGACGGTGAGGCGTCTCCGAGATGGGCCAGCAGCCTCGGCAGGCGGGACGAAGACGCGTCT
CTACCGGTTGCCGACGGCCCGGAGTCGCCCGTTGTGCCGGTGCCGGAGTCGGAGTCGCCCGCTGCTGCCCCGGAC
CCTCGGCGTGGGGCGGCGCCGGAGCCTGACGACAAGGTCGAGAATCAGCTCTCATGGCTGCTTTCACCCGAGCTC
CCGACGGGCCGCAACGTCCGACGCGTGGTTGAGCAATACTTTGTCAACGTCCATCCTTTGCGCTGCTTTGCCTTT
GTTCACAAGCCGTCGTTTATGCACCAGCTCGACAAGGGCCTCGGCTCCGACGACGAGTCTGCTCTGCTACACATT
GTGTGCGCCCACGGGGCGAGATTCCTCGTCCTCGGCCACTGTCTCGATGGCCACGTCGCGACGCCCGCACTGGTG
CGCTCGGCCGGCCACCAATGGGCCAAGCGTGCCGAGTTCCTGATGTTGGCCAACTTTGGGCGAATCTCGATGCCG
CGACTGATGGTGGCCATCTTGCTCCACGACTATTACCTGGGCGCGGGCGAGTACGGCCAGGCGCTGATGCTCAGC
GGGCTGGCGGTGCGGATGGCGTACGCGCTCAAGATCAACCAAGAATACAACGCCGACGTGCTGTGCTCGGAGCCG
GAGCCGGAGCCCGGGGCGCCGTCGGTGGCCTCGCGCGAGAGCCGGCGCCGGCTCATGTGGGCGTGTTATGTGCTC
GACGCCGGGGCCGGAAGCGGAGCCGACCTGCTGCGGGAGAGCGACATCAAGATCCAGCTGCCGTGCAACGAGCGC
AACTTTGGGCTGCGCATCCCGGCCGTGACGGAGACGCTGGCTGTCGGCCACGTTCTGCAGTTTCTGGCGCCGGCC
GTTGTGCCGCGCCGGCCGGCGGCCAACATGGGCATCATGGCCTACTATATCCGTCTGGTGGCGCTGTGGAAGAGG
ATCGTCCGATGCGCCGGCCTCGGCCTCGGACACGGTCAGCCGGACTCGGCCCTGGCCGCGCTGGATGCCGACCTG
CTGCTCTGGAGACGCGAGCTGCCGGACTTTGTCGAGTATTCGACCGAGACCATCTACGCCCGTCTCGACTCGAAC
CAGTTGGGCGCCCTGGTGCTGATACACTGCACCTATCACCACAACCACCTCGAGCTCTACCGGGTCGCCATGCCC
GACCTGTTCAAGCTGGCCTCGTTGCCGGCCGAGCAGCGGCAGGCCCTGCAGGCGGCCCAGGCTGGCTGCTATCAC
CACGCCCGCCGCATATCCGACATCGTCACCGACGCGGCCGAGCACGGGGTGCGCTTCCTGTCCGACAGCCAGCTG
CCCTTCTTCCTCTATCACAGCAGCCGCGTCATGCTCTACTACGTCGCCCGTCTGCTGGACCCGGCCCGACCCGGT
GCCGAGGCCAAGATGAGGGAGGCGGTCGAGGCGGTCGAGAGCAACAGCCGCGTGCTGCGTCTCATGGCCATCCTG
TTCCCCATGGCCCAGTCTCTGTCGGCCACCACCGACCGCTGGCTGTCCAAGGTGCAGCAGACTGTCGGCCGGGAC
GAGCTGGTCCTTCTTCCGCCGCTTTCGCCGCCGAGGCCGGGAGCCGGCGACGAGTCCGAGTCGCGGCCGGCCGGA
TGGAGCACCGTCAACCCCAACGCCGGCGGCTGGGACGGGACCAGCCCGGGGCCGCCGTCCGGACCGCGTCGGGCC
TCGTGCAGCCTCGAGCACGAGCGGCCGGTGGCGGCGCTGTGCGAGGCGCTGGACCTGGACGACTTGCTGAGCTGG
GACCTGTACGGCATCAGCACGGAGATGGGAGAGGGCGTGTGCAACGACGAGATGGACGATTGTGTGTCGCAGTCG
TGGACGGGCGCCATC
Transcript >Ophio5|8392
ATGGGCTGTCGCGTCTGTCGAGCAAGAAAGGTCAAGTGCGACGGCCGGCCCGACGGCTGCCGCAATTGCGAGCGC
CTTCAGCTCGATTGCGATGACGGCTGTCGAGGTGGAGGCAACGACTCGCTGCGCAGGATGCGAACCTATCGCTCG
TGCCAGAACTGTCGGCTCAGCAAGACCAAATGCAGCGGTAGTCGTCCGCGATGTACTCGCTGCGTGGCAAAGGAC
ATGGACTGCCTATACGACGGTGAGGCGTCTCCGAGATGGGCCAGCAGCCTCGGCAGGCGGGACGAAGACGCGTCT
CTACCGGTTGCCGACGGCCCGGAGTCGCCCGTTGTGCCGGTGCCGGAGTCGGAGTCGCCCGCTGCTGCCCCGGAC
CCTCGGCGTGGGGCGGCGCCGGAGCCTGACGACAAGGTCGAGAATCAGCTCTCATGGCTGCTTTCACCCGAGCTC
CCGACGGGCCGCAACGTCCGACGCGTGGTTGAGCAATACTTTGTCAACGTCCATCCTTTGCGCTGCTTTGCCTTT
GTTCACAAGCCGTCGTTTATGCACCAGCTCGACAAGGGCCTCGGCTCCGACGACGAGTCTGCTCTGCTACACATT
GTGTGCGCCCACGGGGCGAGATTCCTCGTCCTCGGCCACTGTCTCGATGGCCACGTCGCGACGCCCGCACTGGTG
CGCTCGGCCGGCCACCAATGGGCCAAGCGTGCCGAGTTCCTGATGTTGGCCAACTTTGGGCGAATCTCGATGCCG
CGACTGATGGTGGCCATCTTGCTCCACGACTATTACCTGGGCGCGGGCGAGTACGGCCAGGCGCTGATGCTCAGC
GGGCTGGCGGTGCGGATGGCGTACGCGCTCAAGATCAACCAAGAATACAACGCCGACGTGCTGTGCTCGGAGCCG
GAGCCGGAGCCCGGGGCGCCGTCGGTGGCCTCGCGCGAGAGCCGGCGCCGGCTCATGTGGGCGTGTTATGTGCTC
GACGCCGGGGCCGGAAGCGGAGCCGACCTGCTGCGGGAGAGCGACATCAAGATCCAGCTGCCGTGCAACGAGCGC
AACTTTGGGCTGCGCATCCCGGCCGTGACGGAGACGCTGGCTGTCGGCCACGTTCTGCAGTTTCTGGCGCCGGCC
GTTGTGCCGCGCCGGCCGGCGGCCAACATGGGCATCATGGCCTACTATATCCGTCTGGTGGCGCTGTGGAAGAGG
ATCGTCCGATGCGCCGGCCTCGGCCTCGGACACGGTCAGCCGGACTCGGCCCTGGCCGCGCTGGATGCCGACCTG
CTGCTCTGGAGACGCGAGCTGCCGGACTTTGTCGAGTATTCGACCGAGACCATCTACGCCCGTCTCGACTCGAAC
CAGTTGGGCGCCCTGGTGCTGATACACTGCACCTATCACCACAACCACCTCGAGCTCTACCGGGTCGCCATGCCC
GACCTGTTCAAGCTGGCCTCGTTGCCGGCCGAGCAGCGGCAGGCCCTGCAGGCGGCCCAGGCTGGCTGCTATCAC
CACGCCCGCCGCATATCCGACATCGTCACCGACGCGGCCGAGCACGGGGTGCGCTTCCTGTCCGACAGCCAGCTG
CCCTTCTTCCTCTATCACAGCAGCCGCGTCATGCTCTACTACGTCGCCCGTCTGCTGGACCCGGCCCGACCCGGT
GCCGAGGCCAAGATGAGGGAGGCGGTCGAGGCGGTCGAGAGCAACAGCCGCGTGCTGCGTCTCATGGCCATCCTG
TTCCCCATGGCCCAGTCTCTGTCGGCCACCACCGACCGCTGGCTGTCCAAGGTGCAGCAGACTGTCGGCCGGGAC
GAGCTGGTCCTTCTTCCGCCGCTTTCGCCGCCGAGGCCGGGAGCCGGCGACGAGTCCGAGTCGCGGCCGGCCGGA
TGGAGCACCGTCAACCCCAACGCCGGCGGCTGGGACGGGACCAGCCCGGGGCCGCCGTCCGGACCGCGTCGGGCC
TCGTGCAGCCTCGAGCACGAGCGGCCGGTGGCGGCGCTGTGCGAGGCGCTGGACCTGGACGACTTGCTGAGCTGG
GACCTGTACGGCATCAGCACGGAGATGGGAGAGGGCGTGTGCAACGACGAGATGGACGATTGTGTGTCGCAGTCG
TGGACGGGCGCCATCTAG
Gene >Ophio5|8392
ATGGGCTGTCGCGTCTGTCGAGCAAGAAAGGCGAGCTTTACCATGCATGGGCTGACGATGGCTTCATTTCTTTTT
TTCCTTCACCTTTACTGACGCCGGCGACAGGTCAAGTGCGACGGCCGGCCCGACGGCTGCCGCAATTGCGAGCGC
CTTCAGCTCGATTGCGATGACGGCTGTCGAGGTGGAGGCAACGACTCGCTGCGCAGGATGCGAACCTATCGCTCG
TGCCAGAACTGTCGGCTCAGCAAGACCAAATGCAGCGGTAGTCGTCCGCGATGTACTCGCTGCGTGGCAAAGGAC
ATGGACTGCCTATACGACGGTGAGGCGTCTCCGAGATGGGCCAGCAGCCTCGGCAGGCGGGACGAAGACGCGTCT
CTACCGGTTGCCGACGGCCCGGAGTCGCCCGTTGTGCCGGTGCCGGAGTCGGAGTCGCCCGCTGCTGCCCCGGAC
CCTCGGCGTGGGGCGGCGCCGGAGCCTGACGACAAGGTCGAGAATCAGCTCTCATGGTGGTGACGCCCTCGCCCC
CCTCTCTCTGGCCGGCATCAGCTGACCGTTTTCTCCCTGACCTGGCTCTTCAGGCTGCTTTCACCCGAGCTCCCG
ACGGGCCGCAACGTCCGACGCGTGGTTGAGCAATACTTTGTCAACGTCCATCCTTTGCGCTGCTTTGCCTTTGTT
CACAAGCCGTCGTTTATGCACCAGCTCGACAAGGGCCTCGGCTCCGACGACGAGTCTGCTCTGCTACACATTGTG
TGCGCCCACGGGGCGAGGTGCGATTCCATCATGTTTAGTAGACTGTAGCCAAACTCACACCGTCTTTAGATTCCT
CGTCCTCGGCCACTGTCTCGATGGCCACGTCGCGACGCCCGCACTGGTGCGCTCGGCCGGCCACCAATGGGCCAA
GCGTGCCGAGTTCCTGATGTTGGCCAACTTTGGGCGAATCTCGATGCCGCGACTGATGGTGGCCATCTTGCTCCA
CGACTATTACCTGGGCGCGGGCGAGTACGGCCAGGCGCTGATGCTCAGCGGGCTGGCGGTGCGGATGGCGTACGC
GCTCAAGATCAACCAAGAATACAACGCCGACGTGCTGTGCTCGGAGCCGGAGCCGGAGCCCGGGGCGCCGTCGGT
GGCCTCGCGCGAGAGCCGGCGCCGGCTCATGTGGGCGTGTTATGTGCTCGACGCCGGGGCCGGAAGCGGAGCCGA
CCTGCTGCGGGAGAGCGACATCAAGATCCAGCTGCCGTGCAACGAGCGCAACTTTGGGCTGCGCATCCCGGCCGT
GACGGAGACGCTGGCTGTCGGCCACGTTCTGCAGTTTCTGGCGCCGGCCGTTGTGCCGCGCCGGCCGGCGGCCAA
CATGGGCATCATGGCCTACTATATCCGTCTGGTGGCGCTGTGGAAGAGGATCGTCCGATGCGCCGGCCTCGGCCT
CGGACACGGTCAGCCGGACTCGGCCCTGGCCGCGCTGGATGCCGACCTGCTGCTCTGGAGACGCGAGCTGCCGGA
CTTTGTCGAGTATTCGACCGAGACCATCTACGCCCGTCTCGACTCGAACCAGTTGGGCGCCCTGGTGCTGATACA
CTGCACCTATCACCACAACCACCTCGAGCTCTACCGGGTCGCCATGCCCGACCTGTTCAAGCTGGCCTCGTTGCC
GGCCGAGCAGCGGCAGGCCCTGCAGGCGGCCCAGGCTGGCTGCTATCACCACGCCCGCCGCATATCCGACATCGT
CACCGACGCGGCCGAGCACGGGGTGCGCTTCCTGTCCGACAGCCAGCTGCCCTTCTTCCTCTATCACAGCAGCCG
CGTCATGCTCTACTACGTCGCCCGTCTGCTGGACCCGGCCCGACCCGGTGCCGAGGCCAAGATGAGGGAGGCGGT
CGAGGCGGTCGAGAGCAACAGCCGCGTGCTGCGTCTCATGGCCATCCTGTTCCCCATGGCCCAGTCTCTGGTCCG
TTGCTTTTCCTCCGGGTGCGTGCGATGAGTGACGCTGACGGAGGAGGGCCGGTGGCACAGTCGGCCACCACCGAC
CGCTGGCTGTCCAAGGTGCAGCAGACTGTCGGCCGGGACGAGCTGGTCCTTCTTCCGCCGCTTTCGCCGCCGAGG
CCGGGAGCCGGCGACGAGTCCGAGTCGCGGCCGGCCGGATGGAGCACCGTCAACCCCAACGCCGGCGGCTGGGAC
GGGACCAGCCCGGGGCCGCCGTCCGGACCGCGTCGGGCCTCGTGCAGCCTCGAGCACGAGCGGCCGGTGGCGGCG
CTGTGCGAGGCGCTGGACCTGGACGACTTGCTGAGCTGGGACCTGTACGGCATCAGCACGGAGATGGGAGAGGGC
GTGTGCAACGACGAGATGGACGATTGTGTGTCGCAGTCGTGGACGGGCGCCATCTAG

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