Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|839
Gene name
Locationscaffold_124:36828..37257
Strand-
Gene length (bp)429
Transcript length (bp)207
Coding sequence length (bp)204
Protein length (aa) 68

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF06624 RAMP4 Ribosome associated membrane protein RAMP4 2.4E-19 2 62

Swissprot hits

(None)

GO

GO Term Description Terminal node
GO:0005783 endoplasmic reticulum Yes
GO:0110165 cellular anatomical entity No
GO:0043227 membrane-bounded organelle No
GO:0005575 cellular_component No
GO:0043229 intracellular organelle No
GO:0043231 intracellular membrane-bounded organelle No
GO:0043226 organelle No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 38 0.5

Transmembrane Domains

Domain # Start End Length
1 41 63 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Click here for more information

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|839
MAQTLEQRRRNAKFAKEQEARMGLSEEQVKKRTRETPKTPISLFWIALLAFVVVGGLLFEALARMFGQ
Coding >Ophio5|839
ATGGCGCAAACGCTCGAGCAGCGCCGCCGCAACGCAAAATTCGCCAAGGAGCAGGAGGCCCGCATGGGCTTGTCG
GAAGAACAGGTCAAGAAGCGCACCAGGGAGACGCCAAAGACGCCCATCTCCTTGTTCTGGATTGCTCTCCTCGCC
TTCGTCGTCGTCGGTGGTCTGTTATTCGAGGCGCTGGCTCGCATGTTCGGCCAG
Transcript >Ophio5|839
ATGGCGCAAACGCTCGAGCAGCGCCGCCGCAACGCAAAATTCGCCAAGGAGCAGGAGGCCCGCATGGGCTTGTCG
GAAGAACAGGTCAAGAAGCGCACCAGGGAGACGCCAAAGACGCCCATCTCCTTGTTCTGGATTGCTCTCCTCGCC
TTCGTCGTCGTCGGTGGTCTGTTATTCGAGGCGCTGGCTCGCATGTTCGGCCAGTGA
Gene >Ophio5|839
ATGGTACGTTTCGTCTCTACTACGTCTGGATTCACCACTTGAACCGGCGCCCCCTCCCCCCCCAATTTCTCGGCT
AAACGCGGCTCCCAGGCGCAAACGCTCGAGCAGCGCCGCCGCAACGCAAAATTCGCCAAGGAGCAGGAGGCCCGC
ATGGGCTTGTCGGAAGAACAGGTCAAGAAGCGCACCAGGGAGACGCCAAAGACGCCCATCTCCTTGTTCTGGATT
GGTGAGTCGACGTCTTTGCCGTGGGGGTGGCAAATCGCAAGCGCGTTGCATAGGGGGAGGGGGAAGGGGGGAAAT
TCTATATGCGTCTTTTTATGCCTTGCCCGCTGAGCTGACTTGGGACACGTACGCGCTACAGCTCTCCTCGCCTTC
GTCGTCGTCGGTGGTCTGTTATTCGAGGCGCTGGCTCGCATGTTCGGCCAGTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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