Fungal Genomics

at Utrecht University

General Properties

Protein ID	Ophio5\|8389
Gene name
Location	scaffold_924:2855..4079
Strand	+
Gene length (bp)	1224
Transcript length (bp)	1224
Coding sequence length (bp)	1221
Protein length (aa)	407

PFAM Domains

(None)

Swissprot hits

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 20	0.45

Transmembrane Domains

Domain #	Start	End	Length
1	289	311	22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label	Description	Expression (RPKM)	Confidence interval (low)	Confidence interval (high)
SC16a	Pure fungal culture	78.51	42.90	114.11
CcL	In ants, during behavior modification	67.98	36.56	99.40
CcD	In ants, recently dead	60.00	32.43	87.56

Differential expression

Label1	Label2	Q-value	Significant difference
SC16a	CcL	0.569817	no
SC16a	CcD	0.252824	no
CcL	CcD	0.637182	no

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Ophio5\|8389 MGKPTTSFASASLPQPASARLDESGSAISLHTSSGRYRDDPEANDDDDDDDQDLPPLYTEHEEYSDTVVDPLVPP GTGPLVTPFGHDGDGATAYYLDRRLDSDPVFLADHVRRLATIPPRPWVRLRGTHRERRRRAGGDKSHLSGDDVVV DFDIRIELTHLLYSDIRRQQAWRALVTAGNLEKVRRGTVFPDRAPGFGGAPCSAGGAVEQNGVPGLDQWCHRFCA SPAHLRCFSVERRIVGWDWDLLRRRLEALIRATNYRGHAVVSFPVGNARADMYSNCRTNRWRLTGWIRFVFYATL LFLFTWPWLFFRTRRWETVAAEWYVSMPTSVPGRRQYAAGVSEERWYALWAPAIQRAMLERRDGQLDQGDLERAQ GQTTTGQGVVRAGVEAAMGVVNRSFGWGGDEC
Coding	>Ophio5\|8389 ATGGGCAAACCGACTACATCCTTTGCATCCGCCTCCTTGCCGCAGCCGGCTTCCGCCCGCCTCGATGAATCCGGC AGCGCTATTTCCCTCCACACGTCTTCGGGCCGCTATCGCGATGATCCCGAGGCCAATGACGACGACGACGACGAC GATCAAGACCTCCCGCCGCTGTACACCGAACACGAAGAGTACAGCGATACGGTTGTCGATCCTCTCGTCCCTCCC GGCACCGGCCCTCTCGTGACGCCCTTTGGCCACGACGGCGACGGCGCAACAGCCTACTATCTCGACCGTCGTCTC GACTCCGATCCCGTCTTCCTCGCCGATCATGTGCGTCGTCTTGCTACTATACCGCCCCGACCATGGGTGCGGCTT CGAGGAACTCATCGTGAGCGGCGTCGTCGGGCCGGTGGTGATAAGAGTCATCTCTCTGGCGACGACGTGGTTGTC GACTTTGACATTCGCATCGAGTTGACCCATCTCCTTTACTCTGATATCCGGCGACAACAGGCCTGGCGCGCCCTC GTCACCGCCGGAAACCTGGAAAAAGTCCGTCGAGGAACCGTCTTTCCCGATCGAGCTCCGGGTTTCGGCGGCGCT CCTTGTTCGGCCGGCGGCGCGGTGGAGCAGAACGGCGTACCTGGCCTCGACCAATGGTGTCATCGCTTCTGTGCC AGCCCTGCTCACCTACGCTGCTTTAGCGTGGAGCGCCGCATCGTCGGCTGGGACTGGGATCTGCTTCGACGACGG CTCGAGGCCCTAATCCGCGCAACTAATTACCGCGGCCATGCTGTCGTCAGCTTTCCCGTCGGCAATGCCCGCGCC GACATGTACAGCAACTGCCGCACCAACCGTTGGCGCCTGACGGGTTGGATCCGCTTCGTCTTCTACGCCACCCTG CTCTTCCTCTTTACCTGGCCCTGGCTCTTCTTCCGTACCCGCCGATGGGAAACGGTGGCGGCTGAGTGGTACGTC AGCATGCCGACCAGCGTTCCCGGTCGCAGGCAGTATGCGGCCGGCGTCAGCGAGGAGCGCTGGTATGCCTTGTGG GCGCCTGCCATTCAGCGCGCCATGCTCGAGCGCAGGGACGGTCAGCTGGATCAGGGTGACCTGGAGCGGGCTCAG GGACAGACGACCACTGGTCAGGGTGTTGTCAGGGCGGGCGTCGAGGCGGCCATGGGCGTCGTCAATCGGTCTTTT GGATGGGGGGGTGATGAGTGT
Transcript	>Ophio5\|8389 ATGGGCAAACCGACTACATCCTTTGCATCCGCCTCCTTGCCGCAGCCGGCTTCCGCCCGCCTCGATGAATCCGGC AGCGCTATTTCCCTCCACACGTCTTCGGGCCGCTATCGCGATGATCCCGAGGCCAATGACGACGACGACGACGAC GATCAAGACCTCCCGCCGCTGTACACCGAACACGAAGAGTACAGCGATACGGTTGTCGATCCTCTCGTCCCTCCC GGCACCGGCCCTCTCGTGACGCCCTTTGGCCACGACGGCGACGGCGCAACAGCCTACTATCTCGACCGTCGTCTC GACTCCGATCCCGTCTTCCTCGCCGATCATGTGCGTCGTCTTGCTACTATACCGCCCCGACCATGGGTGCGGCTT CGAGGAACTCATCGTGAGCGGCGTCGTCGGGCCGGTGGTGATAAGAGTCATCTCTCTGGCGACGACGTGGTTGTC GACTTTGACATTCGCATCGAGTTGACCCATCTCCTTTACTCTGATATCCGGCGACAACAGGCCTGGCGCGCCCTC GTCACCGCCGGAAACCTGGAAAAAGTCCGTCGAGGAACCGTCTTTCCCGATCGAGCTCCGGGTTTCGGCGGCGCT CCTTGTTCGGCCGGCGGCGCGGTGGAGCAGAACGGCGTACCTGGCCTCGACCAATGGTGTCATCGCTTCTGTGCC AGCCCTGCTCACCTACGCTGCTTTAGCGTGGAGCGCCGCATCGTCGGCTGGGACTGGGATCTGCTTCGACGACGG CTCGAGGCCCTAATCCGCGCAACTAATTACCGCGGCCATGCTGTCGTCAGCTTTCCCGTCGGCAATGCCCGCGCC GACATGTACAGCAACTGCCGCACCAACCGTTGGCGCCTGACGGGTTGGATCCGCTTCGTCTTCTACGCCACCCTG CTCTTCCTCTTTACCTGGCCCTGGCTCTTCTTCCGTACCCGCCGATGGGAAACGGTGGCGGCTGAGTGGTACGTC AGCATGCCGACCAGCGTTCCCGGTCGCAGGCAGTATGCGGCCGGCGTCAGCGAGGAGCGCTGGTATGCCTTGTGG GCGCCTGCCATTCAGCGCGCCATGCTCGAGCGCAGGGACGGTCAGCTGGATCAGGGTGACCTGGAGCGGGCTCAG GGACAGACGACCACTGGTCAGGGTGTTGTCAGGGCGGGCGTCGAGGCGGCCATGGGCGTCGTCAATCGGTCTTTT GGATGGGGGGGTGATGAGTGTTGA
Gene	>Ophio5\|8389 ATGGGCAAACCGACTACATCCTTTGCATCCGCCTCCTTGCCGCAGCCGGCTTCCGCCCGCCTCGATGAATCCGGC AGCGCTATTTCCCTCCACACGTCTTCGGGCCGCTATCGCGATGATCCCGAGGCCAATGACGACGACGACGACGAC GATCAAGACCTCCCGCCGCTGTACACCGAACACGAAGAGTACAGCGATACGGTTGTCGATCCTCTCGTCCCTCCC GGCACCGGCCCTCTCGTGACGCCCTTTGGCCACGACGGCGACGGCGCAACAGCCTACTATCTCGACCGTCGTCTC GACTCCGATCCCGTCTTCCTCGCCGATCATGTGCGTCGTCTTGCTACTATACCGCCCCGACCATGGGTGCGGCTT CGAGGAACTCATCGTGAGCGGCGTCGTCGGGCCGGTGGTGATAAGAGTCATCTCTCTGGCGACGACGTGGTTGTC GACTTTGACATTCGCATCGAGTTGACCCATCTCCTTTACTCTGATATCCGGCGACAACAGGCCTGGCGCGCCCTC GTCACCGCCGGAAACCTGGAAAAAGTCCGTCGAGGAACCGTCTTTCCCGATCGAGCTCCGGGTTTCGGCGGCGCT CCTTGTTCGGCCGGCGGCGCGGTGGAGCAGAACGGCGTACCTGGCCTCGACCAATGGTGTCATCGCTTCTGTGCC AGCCCTGCTCACCTACGCTGCTTTAGCGTGGAGCGCCGCATCGTCGGCTGGGACTGGGATCTGCTTCGACGACGG CTCGAGGCCCTAATCCGCGCAACTAATTACCGCGGCCATGCTGTCGTCAGCTTTCCCGTCGGCAATGCCCGCGCC GACATGTACAGCAACTGCCGCACCAACCGTTGGCGCCTGACGGGTTGGATCCGCTTCGTCTTCTACGCCACCCTG CTCTTCCTCTTTACCTGGCCCTGGCTCTTCTTCCGTACCCGCCGATGGGAAACGGTGGCGGCTGAGTGGTACGTC AGCATGCCGACCAGCGTTCCCGGTCGCAGGCAGTATGCGGCCGGCGTCAGCGAGGAGCGCTGGTATGCCTTGTGG GCGCCTGCCATTCAGCGCGCCATGCTCGAGCGCAGGGACGGTCAGCTGGATCAGGGTGACCTGGAGCGGGCTCAG GGACAGACGACCACTGGTCAGGGTGTTGTCAGGGCGGGCGTCGAGGCGGCCATGGGCGTCGTCAATCGGTCTTTT GGATGGGGGGGTGATGAGTGTTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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