Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|8363
Gene name
Locationscaffold_92:14401..15504
Strand+
Gene length (bp)1103
Transcript length (bp)765
Coding sequence length (bp)762
Protein length (aa) 254

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF04099 Sybindin Sybindin-like family 1.4E-52 101 250
PF04628 Sedlin_N Sedlin, N-terminal conserved region 2.2E-06 176 246

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q54UU1|TPPC4_DICDI Trafficking protein particle complex subunit 4 OS=Dictyostelium discoideum GN=trappc4 PE=3 SV=1 99 244 6.0E-37
sp|O43041|TRS23_SCHPO Transport protein particle subunit trs23 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=trs23 PE=3 SV=1 103 248 1.0E-36
sp|Q69BT7|TPPC4_RAT Trafficking protein particle complex subunit 4 OS=Rattus norvegicus GN=Trappc4 PE=2 SV=1 126 244 1.0E-29
sp|Q2TBL9|TPPC4_BOVIN Trafficking protein particle complex subunit 4 OS=Bos taurus GN=TRAPPC4 PE=2 SV=1 126 244 1.0E-29
sp|Q9ES56|TPPC4_MOUSE Trafficking protein particle complex subunit 4 OS=Mus musculus GN=Trappc4 PE=1 SV=1 126 244 1.0E-29
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Swissprot ID Swissprot Description Start End E-value
sp|Q54UU1|TPPC4_DICDI Trafficking protein particle complex subunit 4 OS=Dictyostelium discoideum GN=trappc4 PE=3 SV=1 99 244 6.0E-37
sp|O43041|TRS23_SCHPO Transport protein particle subunit trs23 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=trs23 PE=3 SV=1 103 248 1.0E-36
sp|Q69BT7|TPPC4_RAT Trafficking protein particle complex subunit 4 OS=Rattus norvegicus GN=Trappc4 PE=2 SV=1 126 244 1.0E-29
sp|Q2TBL9|TPPC4_BOVIN Trafficking protein particle complex subunit 4 OS=Bos taurus GN=TRAPPC4 PE=2 SV=1 126 244 1.0E-29
sp|Q9ES56|TPPC4_MOUSE Trafficking protein particle complex subunit 4 OS=Mus musculus GN=Trappc4 PE=1 SV=1 126 244 1.0E-29
sp|Q5R9J9|TPPC4_PONAB Trafficking protein particle complex subunit 4 OS=Pongo abelii GN=TRAPPC4 PE=2 SV=1 126 244 4.0E-29
sp|Q9Y296|TPPC4_HUMAN Trafficking protein particle complex subunit 4 OS=Homo sapiens GN=TRAPPC4 PE=1 SV=1 126 244 4.0E-29
sp|Q03784|TRS23_YEAST Trafficking protein particle complex subunit 23 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TRS23 PE=1 SV=1 99 251 2.0E-21
sp|Q557G3|TPPC1_DICDI Trafficking protein particle complex subunit 1 OS=Dictyostelium discoideum GN=trappc1-1 PE=3 SV=1 101 251 1.0E-08
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GO

GO Term Description Terminal node
GO:0016192 vesicle-mediated transport Yes
GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport Yes
GO:0030008 TRAPP complex Yes
GO:0051649 establishment of localization in cell No
GO:0051641 cellular localization No
GO:0009987 cellular process No
GO:0099023 vesicle tethering complex No
GO:0051234 establishment of localization No
GO:0006810 transport No
GO:0046907 intracellular transport No
GO:0048193 Golgi vesicle transport No
GO:0032991 protein-containing complex No
GO:0005575 cellular_component No
GO:0140535 intracellular protein-containing complex No
GO:0051179 localization No
GO:0008150 biological_process No

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Cytoplasm 0.5125 0.4502 0.239 0.0723 0.1601 0.1344 0.2919 0.2363 0.2581 0.0659

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Click here for more information

Orthologs

Orthofinder run ID4
Orthogroup4968
Change Orthofinder run
Species Protein ID
Ophiocordyceps australis 1348a (Ghana) OphauG2|6119
Ophiocordyceps australis map64 (Brazil) OphauB2|2645
Ophiocordyceps camponoti-floridani Ophcf2|07320
Ophiocordyceps camponoti-rufipedis Ophun1|4438
Ophiocordyceps kimflemingae Ophio5|8363 (this protein)
Ophiocordyceps subramaniannii Hirsu2|2058

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|8363
MDRQPRPFVGPRGGSSEWQLRSSPSPNQRNKSIQSARAARTLIRLDLHDAADSQPPPPLPPFRVVHGRLRRSRLL
AVSGEEASDAAEAEDCASLRPDAMTVFALIIINKAGGLVYNKTFHDGGLNKISTNDYLVLAGTFHGVHAITARLN
PVKATPPSNPHSAPNLHNRPESSSGLEVLETENFRMQCFNTLTGTKFLLFTDTTQVNVDLTLRRIYDLYADYVMK
NPFYSLEMPIRCDIFDRKLLSYIREINNR
Coding >Ophio5|8363
ATGGACAGACAGCCTCGCCCTTTTGTTGGCCCCCGTGGCGGAAGCAGCGAGTGGCAACTTCGCTCGTCCCCCTCG
CCGAATCAAAGGAACAAGTCGATTCAATCTGCCCGCGCCGCTCGTACTCTCATCCGGCTTGATTTGCACGACGCT
GCCGACTCTCAGCCACCCCCTCCACTCCCCCCCTTTCGAGTAGTCCATGGCCGGCTGAGAAGAAGTAGGTTGCTT
GCTGTGTCCGGAGAAGAGGCGAGCGACGCAGCGGAAGCTGAAGACTGTGCGTCGTTGCGACCGGACGCCATGACC
GTCTTCGCCCTCATCATCATCAACAAGGCCGGCGGCTTGGTGTACAACAAGACGTTCCACGACGGCGGTCTCAAC
AAGATCAGCACGAATGACTACCTCGTTCTCGCCGGCACCTTTCATGGCGTCCACGCCATCACCGCCCGTCTCAAC
CCGGTCAAGGCCACGCCGCCGTCCAACCCCCACTCGGCTCCCAACTTGCACAACCGGCCGGAGTCCTCGTCGGGT
CTGGAGGTGCTCGAGACGGAAAACTTTCGCATGCAGTGCTTCAACACCCTGACCGGCACAAAGTTTCTACTCTTC
ACAGACACCACTCAGGTCAATGTCGATCTGACGCTGAGGAGGATATACGACCTGTACGCCGACTACGTCATGAAG
AATCCCTTTTACTCCCTAGAGATGCCCATCCGGTGCGACATCTTTGACCGGAAACTGCTTTCCTACATTAGAGAG
ATCAATAATCGT
Transcript >Ophio5|8363
ATGGACAGACAGCCTCGCCCTTTTGTTGGCCCCCGTGGCGGAAGCAGCGAGTGGCAACTTCGCTCGTCCCCCTCG
CCGAATCAAAGGAACAAGTCGATTCAATCTGCCCGCGCCGCTCGTACTCTCATCCGGCTTGATTTGCACGACGCT
GCCGACTCTCAGCCACCCCCTCCACTCCCCCCCTTTCGAGTAGTCCATGGCCGGCTGAGAAGAAGTAGGTTGCTT
GCTGTGTCCGGAGAAGAGGCGAGCGACGCAGCGGAAGCTGAAGACTGTGCGTCGTTGCGACCGGACGCCATGACC
GTCTTCGCCCTCATCATCATCAACAAGGCCGGCGGCTTGGTGTACAACAAGACGTTCCACGACGGCGGTCTCAAC
AAGATCAGCACGAATGACTACCTCGTTCTCGCCGGCACCTTTCATGGCGTCCACGCCATCACCGCCCGTCTCAAC
CCGGTCAAGGCCACGCCGCCGTCCAACCCCCACTCGGCTCCCAACTTGCACAACCGGCCGGAGTCCTCGTCGGGT
CTGGAGGTGCTCGAGACGGAAAACTTTCGCATGCAGTGCTTCAACACCCTGACCGGCACAAAGTTTCTACTCTTC
ACAGACACCACTCAGGTCAATGTCGATCTGACGCTGAGGAGGATATACGACCTGTACGCCGACTACGTCATGAAG
AATCCCTTTTACTCCCTAGAGATGCCCATCCGGTGCGACATCTTTGACCGGAAACTGCTTTCCTACATTAGAGAG
ATCAATAATCGTTGA
Gene >Ophio5|8363
ATGGACAGACAGCCTCGCCCTTTTGTTGGCCCCCGTGGCGGAGTGGACAATAGCTGCTGACTCACTTCAGTCGAG
CCACCTTTGACTCTGATAACGAGAGCAGCGAGTGGTGAGAACGAAAGGCAGGTGAAAGCCGGACTTACCACTTGG
TTACCCGTAGGCAACTTCGCTCGTCCCCCTCGCCGAATCAAAGGAACAAGTCGATTCAATCTGCCCGCGCCGCTC
GTACTCTCATCCGGCTTGATTTGCACGACGCTGCCGACTCTCAGCCACCCCCTCCACTCCCCCCCTTTCGAGTAG
TCCATGGCCGGCTGAGAAGAAGTAGGTTGCTTGCTGTGTCCGGAGAAGAGGCGAGCGACGCAGCGGAAGCTGAAG
ACTGTGCGTCGTTGCGACCGGACGCCATGTACGTCTTATATTCTCTCCTCTGTTCATCTTGCCTGCTTTTCGTCG
TCGGTGCCCGTCTCGTTGCTGAACCAGGGCTTTCAGGACCGTCTTCGCCCTCATCATCATCAACAAGGCCGGCGG
CTTGGTGTACAACAAGACGTTCCACGACGGCGGTCTCAACAAGATCAGCACGAATGACTACCTCGTTCTCGCCGG
CACCTTTCATGGGTATGCTGCCTTGACATTGTCCTCGATTCCGTTCCCCATCTTCCTCCTCCTCCTCTTCCTCCT
CCTCCTCCTCGTCTCCCTCCTCGTATCTTACTCTCTTCGCCCTCCTTCCCTTCGTCCTCATGCTCACACCCTCGC
CTTCCCTCAGCGTCCACGCCATCACCGCCCGTCTCAACCCGGTCAAGGCCACGCCGCCGTCCAACCCCCACTCGG
CTCCCAACTTGCACAACCGGCCGGAGTCCTCGTCGGGTCTGGAGGTGCTCGAGACGGAAAACTTTCGCATGCAGT
GCTTCAACACCCTGACCGGCACAAAGTTTCTACTCTTCACAGACACCACTCAGGTCAATGTCGATCTGACGCTGA
GGAGGATATACGACCTGTACGCCGACTACGTCATGAAGAATCCCTTTTACTCCCTAGAGATGCCCATCCGGTGCG
ACATCTTTGACCGGAAACTGCTTTCCTACATTAGAGAGATCAATAATCGTTGA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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