Protein ID | Ophio5|833 |
Gene name | |
Location | scaffold_124:22266..23343 |
Strand | + |
Gene length (bp) | 1077 |
Transcript length (bp) | 795 |
Coding sequence length (bp) | 792 |
Protein length (aa) | 264 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF03896 | TRAP_alpha | Translocon-associated protein (TRAP), alpha subunit | 2.2E-06 | 92 | 244 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|C5M501|IR222_CANTT | Increased recombination centers protein 22-2 OS=Candida tropicalis (strain ATCC MYA-3404 / T1) GN=IRC22-2 PE=3 SV=1 | 1 | 245 | 2.0E-18 |
sp|B9WCP3|IRC22_CANDC | Increased recombination centers protein 22 OS=Candida dubliniensis (strain CD36 / ATCC MYA-646 / CBS 7987 / NCPF 3949 / NRRL Y-17841) GN=IRC22 PE=3 SV=1 | 53 | 253 | 4.0E-18 |
sp|Q59YF4|IR221_CANAL | Increased recombination centers protein 22-1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=IRC22-1 PE=3 SV=1 | 53 | 253 | 1.0E-14 |
sp|C4YKP5|IR221_CANAW | Increased recombination centers protein 22-1 OS=Candida albicans (strain WO-1) GN=IRC22-1 PE=3 SV=1 | 53 | 253 | 3.0E-14 |
sp|P0CH79|IR222_CANAW | Increased recombination centers protein 22-2 OS=Candida albicans (strain WO-1) GN=IRC22-2 PE=3 SV=1 | 53 | 253 | 3.0E-14 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|C5M501|IR222_CANTT | Increased recombination centers protein 22-2 OS=Candida tropicalis (strain ATCC MYA-3404 / T1) GN=IRC22-2 PE=3 SV=1 | 1 | 245 | 2.0E-18 |
sp|B9WCP3|IRC22_CANDC | Increased recombination centers protein 22 OS=Candida dubliniensis (strain CD36 / ATCC MYA-646 / CBS 7987 / NCPF 3949 / NRRL Y-17841) GN=IRC22 PE=3 SV=1 | 53 | 253 | 4.0E-18 |
sp|Q59YF4|IR221_CANAL | Increased recombination centers protein 22-1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=IRC22-1 PE=3 SV=1 | 53 | 253 | 1.0E-14 |
sp|C4YKP5|IR221_CANAW | Increased recombination centers protein 22-1 OS=Candida albicans (strain WO-1) GN=IRC22-1 PE=3 SV=1 | 53 | 253 | 3.0E-14 |
sp|P0CH79|IR222_CANAW | Increased recombination centers protein 22-2 OS=Candida albicans (strain WO-1) GN=IRC22-2 PE=3 SV=1 | 53 | 253 | 3.0E-14 |
sp|A5DYV2|IRC22_LODEL | Increased recombination centers protein 22 OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) GN=IRC22 PE=3 SV=1 | 53 | 252 | 6.0E-14 |
sp|Q59XW9|IR222_CANAL | Increased recombination centers protein 22-2 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=IRC22-2 PE=3 SV=1 | 53 | 253 | 7.0E-14 |
sp|C5M580|IR221_CANTT | Increased recombination centers protein 22-1 OS=Candida tropicalis (strain ATCC MYA-3404 / T1) GN=IRC22-1 PE=3 SV=1 | 1 | 245 | 6.0E-12 |
sp|Q6BW93|IRC22_DEBHA | Increased recombination centers protein 22 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=IRC22 PE=3 SV=1 | 50 | 251 | 4.0E-11 |
sp|A3LU17|IRC22_PICST | Increased recombination centers protein 22 OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545) GN=IRC22 PE=3 SV=1 | 53 | 251 | 8.0E-09 |
sp|C4R0M5|IRC22_PICPG | Increased recombination centers protein 22 OS=Komagataella pastoris (strain GS115 / ATCC 20864) GN=IRC22 PE=3 SV=1 | 49 | 216 | 1.0E-07 |
sp|A5DEU9|IRC22_PICGU | Increased recombination centers protein 22 OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) GN=IRC22 PE=3 SV=1 | 50 | 251 | 1.0E-05 |
GO Term | Description | Terminal node |
---|---|---|
GO:0005789 | endoplasmic reticulum membrane | Yes |
GO:0110165 | cellular anatomical entity | No |
GO:0016020 | membrane | No |
GO:0005575 | cellular_component | No |
GO:0031090 | organelle membrane | No |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
Yes | 1 - 20 | 0.45 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 169 | 188 | 19 |
Expression values
Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
---|---|---|---|---|
SC16a | Pure fungal culture | 163.54 | 88.73 | 238.35 |
CcL | In ants, during behavior modification | 101.23 | 51.56 | 150.91 |
CcD | In ants, recently dead | 119.69 | 65.74 | 173.64 |
Differential expression
Label1 | Label2 | Q-value | Significant difference |
---|---|---|---|
SC16a | CcL | 0.039459 | yes |
SC16a | CcD | 0.171195 | no |
CcL | CcD | 0.512703 | no |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Ophio5|833 MLFSPLLALVAVWALGAKADGDASAPPPRPAELAADIKTTFPDADILGVRLINGRATKALVEVKNKEDGPIKVAY LAGALVSTKPLPANAPAYQAIVRNLTAVQYNLDIEAGEAKAFPFSFMLDMQPQDVHLQLVAVVTNAKGNLVQVPA HNGTASIVEAPTSFFDPQIIFLYFVLSAAFAGTLYFVYKTWIEALFPQTKHIKPAKKSKKTADADAALSGAESTA VSPGAGKTYDESWIPDHHIKPPVAKRVKSGVGSKKKGVE |
Coding | >Ophio5|833 ATGCTCTTCTCTCCTCTGCTGGCCCTCGTGGCCGTCTGGGCTTTGGGCGCAAAGGCCGATGGTGACGCGTCTGCG CCGCCTCCTCGACCGGCCGAACTCGCAGCCGATATCAAGACGACTTTCCCCGATGCTGATATCCTCGGTGTGCGT CTCATCAACGGCAGGGCGACCAAGGCGCTGGTCGAGGTGAAGAATAAAGAGGATGGTCCGATCAAGGTGGCTTAC CTTGCTGGCGCCCTCGTCAGCACCAAGCCGCTACCGGCCAATGCGCCCGCTTACCAGGCCATCGTCCGTAACCTC ACTGCCGTGCAGTACAATCTCGATATCGAGGCTGGCGAGGCAAAGGCGTTTCCCTTTTCCTTCATGCTTGATATG CAGCCTCAGGATGTCCATCTTCAGCTCGTGGCTGTCGTCACCAACGCAAAGGGCAACCTCGTTCAGGTGCCCGCT CACAACGGCACGGCATCTATAGTCGAGGCTCCCACGAGCTTCTTCGATCCCCAGATCATCTTCCTCTACTTCGTC CTGTCGGCCGCCTTCGCCGGCACTCTCTACTTTGTCTACAAGACCTGGATCGAGGCCCTCTTCCCGCAGACCAAG CACATTAAGCCGGCTAAGAAAAGCAAAAAGACGGCCGACGCCGACGCCGCTCTCTCGGGTGCCGAGTCGACGGCC GTATCGCCGGGCGCGGGCAAGACGTACGACGAGAGCTGGATCCCCGACCATCACATCAAGCCTCCCGTCGCCAAG CGCGTCAAGTCGGGCGTCGGCAGCAAGAAGAAGGGTGTCGAA |
Transcript | >Ophio5|833 ATGCTCTTCTCTCCTCTGCTGGCCCTCGTGGCCGTCTGGGCTTTGGGCGCAAAGGCCGATGGTGACGCGTCTGCG CCGCCTCCTCGACCGGCCGAACTCGCAGCCGATATCAAGACGACTTTCCCCGATGCTGATATCCTCGGTGTGCGT CTCATCAACGGCAGGGCGACCAAGGCGCTGGTCGAGGTGAAGAATAAAGAGGATGGTCCGATCAAGGTGGCTTAC CTTGCTGGCGCCCTCGTCAGCACCAAGCCGCTACCGGCCAATGCGCCCGCTTACCAGGCCATCGTCCGTAACCTC ACTGCCGTGCAGTACAATCTCGATATCGAGGCTGGCGAGGCAAAGGCGTTTCCCTTTTCCTTCATGCTTGATATG CAGCCTCAGGATGTCCATCTTCAGCTCGTGGCTGTCGTCACCAACGCAAAGGGCAACCTCGTTCAGGTGCCCGCT CACAACGGCACGGCATCTATAGTCGAGGCTCCCACGAGCTTCTTCGATCCCCAGATCATCTTCCTCTACTTCGTC CTGTCGGCCGCCTTCGCCGGCACTCTCTACTTTGTCTACAAGACCTGGATCGAGGCCCTCTTCCCGCAGACCAAG CACATTAAGCCGGCTAAGAAAAGCAAAAAGACGGCCGACGCCGACGCCGCTCTCTCGGGTGCCGAGTCGACGGCC GTATCGCCGGGCGCGGGCAAGACGTACGACGAGAGCTGGATCCCCGACCATCACATCAAGCCTCCCGTCGCCAAG CGCGTCAAGTCGGGCGTCGGCAGCAAGAAGAAGGGTGTCGAATAG |
Gene | >Ophio5|833 ATGCTCTTCTCTCCTCTGCTGGCCCTCGTGGCCGTCTGGGCTTTGGGCGCAAAGGTGAGGGAATTGGTTTTTTTT TGGGGGGGGGGGAGGGCAGGGGGCTTGGCGTTTGTCGACGGTGCTCTTTTGGGACCTTTTTTTTTTTCCTTTCGA AAGTCATGTTCCATTGTCTCTCTTGTCTTTTTTGCTTGGCTTTGTCTTGGCCTCTTGTTTTTCTCTACCTTTTTC TTTTTATGACGATGAGCTGAATGTCTTCTAGGCCGATGGTGACGCGTCTGCGCCGCCTCCTCGACCGGCCGAACT CGCAGCCGATATCAAGACGACTTTCCCCGATGCTGATATCCTCGGTGTGCGTCTCATCAACGGCAGGGCGACCAA GGCGCTGGTCGAGGTGAAGAATAAAGAGGATGGTCCGATCAAGGTGGCTTACCTTGCTGGCGCCCTCGTCAGCAC CAAGCCGCTACCGGCCAATGCGCCCGCTTACCAGGCCATCGTCCGTAACCTCACTGCCGTGCAGTACAATCTCGA TATCGAGGCTGGCGAGGCAAAGGCGTTTCCCTTTTCCTTCATGCTTGATATGCAGCCTCAGGATGTCCATCTTCA GCTCGTGGCTGTCGTCACCAACGCAAAGGGCAACCTCGTTCAGGTGCCCGCTCACAACGGCACGGCATCTATAGT CGAGGCTCCCACGAGCTTCTTCGATCCCCAGATGTGCGTATTTTGGTTTTTTAACTCCAATTTTCCTTGTCTCTC TCTTGTCTCGACCAAGTTTATGCTAAGTCGTCGCGCAGCATCTTCCTCTACTTCGTCCTGTCGGCCGCCTTCGCC GGCACTCTCTACTTTGTCTACAAGACCTGGATCGAGGCCCTCTTCCCGCAGACCAAGCACATTAAGCCGGCTAAG AAAAGCAAAAAGACGGCCGACGCCGACGCCGCTCTCTCGGGTGCCGAGTCGACGGCCGTATCGCCGGGCGCGGGC AAGACGTACGACGAGAGCTGGATCCCCGACCATCACATCAAGCCTCCCGTCGCCAAGCGCGTCAAGTCGGGCGTC GGCAGCAAGAAGAAGGGTGTCGAATAG |