Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|833
Gene name
Locationscaffold_124:22266..23343
Strand+
Gene length (bp)1077
Transcript length (bp)795
Coding sequence length (bp)792
Protein length (aa) 264

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF03896 TRAP_alpha Translocon-associated protein (TRAP), alpha subunit 2.2E-06 92 244

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|C5M501|IR222_CANTT Increased recombination centers protein 22-2 OS=Candida tropicalis (strain ATCC MYA-3404 / T1) GN=IRC22-2 PE=3 SV=1 1 245 2.0E-18
sp|B9WCP3|IRC22_CANDC Increased recombination centers protein 22 OS=Candida dubliniensis (strain CD36 / ATCC MYA-646 / CBS 7987 / NCPF 3949 / NRRL Y-17841) GN=IRC22 PE=3 SV=1 53 253 4.0E-18
sp|Q59YF4|IR221_CANAL Increased recombination centers protein 22-1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=IRC22-1 PE=3 SV=1 53 253 1.0E-14
sp|C4YKP5|IR221_CANAW Increased recombination centers protein 22-1 OS=Candida albicans (strain WO-1) GN=IRC22-1 PE=3 SV=1 53 253 3.0E-14
sp|P0CH79|IR222_CANAW Increased recombination centers protein 22-2 OS=Candida albicans (strain WO-1) GN=IRC22-2 PE=3 SV=1 53 253 3.0E-14
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Swissprot ID Swissprot Description Start End E-value
sp|C5M501|IR222_CANTT Increased recombination centers protein 22-2 OS=Candida tropicalis (strain ATCC MYA-3404 / T1) GN=IRC22-2 PE=3 SV=1 1 245 2.0E-18
sp|B9WCP3|IRC22_CANDC Increased recombination centers protein 22 OS=Candida dubliniensis (strain CD36 / ATCC MYA-646 / CBS 7987 / NCPF 3949 / NRRL Y-17841) GN=IRC22 PE=3 SV=1 53 253 4.0E-18
sp|Q59YF4|IR221_CANAL Increased recombination centers protein 22-1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=IRC22-1 PE=3 SV=1 53 253 1.0E-14
sp|C4YKP5|IR221_CANAW Increased recombination centers protein 22-1 OS=Candida albicans (strain WO-1) GN=IRC22-1 PE=3 SV=1 53 253 3.0E-14
sp|P0CH79|IR222_CANAW Increased recombination centers protein 22-2 OS=Candida albicans (strain WO-1) GN=IRC22-2 PE=3 SV=1 53 253 3.0E-14
sp|A5DYV2|IRC22_LODEL Increased recombination centers protein 22 OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) GN=IRC22 PE=3 SV=1 53 252 6.0E-14
sp|Q59XW9|IR222_CANAL Increased recombination centers protein 22-2 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=IRC22-2 PE=3 SV=1 53 253 7.0E-14
sp|C5M580|IR221_CANTT Increased recombination centers protein 22-1 OS=Candida tropicalis (strain ATCC MYA-3404 / T1) GN=IRC22-1 PE=3 SV=1 1 245 6.0E-12
sp|Q6BW93|IRC22_DEBHA Increased recombination centers protein 22 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=IRC22 PE=3 SV=1 50 251 4.0E-11
sp|A3LU17|IRC22_PICST Increased recombination centers protein 22 OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545) GN=IRC22 PE=3 SV=1 53 251 8.0E-09
sp|C4R0M5|IRC22_PICPG Increased recombination centers protein 22 OS=Komagataella pastoris (strain GS115 / ATCC 20864) GN=IRC22 PE=3 SV=1 49 216 1.0E-07
sp|A5DEU9|IRC22_PICGU Increased recombination centers protein 22 OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) GN=IRC22 PE=3 SV=1 50 251 1.0E-05
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GO

GO Term Description Terminal node
GO:0005789 endoplasmic reticulum membrane Yes
GO:0110165 cellular anatomical entity No
GO:0016020 membrane No
GO:0005575 cellular_component No
GO:0031090 organelle membrane No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
Yes 1 - 20 0.45

Transmembrane Domains

Domain # Start End Length
1 169 188 19

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
SC16a Pure fungal culture 163.54 88.73 238.35
CcL In ants, during behavior modification 101.23 51.56 150.91
CcD In ants, recently dead 119.69 65.74 173.64

Differential expression

Label1 Label2 Q-value Significant difference
SC16a CcL 0.039459 yes
SC16a CcD 0.171195 no
CcL CcD 0.512703 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|833
MLFSPLLALVAVWALGAKADGDASAPPPRPAELAADIKTTFPDADILGVRLINGRATKALVEVKNKEDGPIKVAY
LAGALVSTKPLPANAPAYQAIVRNLTAVQYNLDIEAGEAKAFPFSFMLDMQPQDVHLQLVAVVTNAKGNLVQVPA
HNGTASIVEAPTSFFDPQIIFLYFVLSAAFAGTLYFVYKTWIEALFPQTKHIKPAKKSKKTADADAALSGAESTA
VSPGAGKTYDESWIPDHHIKPPVAKRVKSGVGSKKKGVE
Coding >Ophio5|833
ATGCTCTTCTCTCCTCTGCTGGCCCTCGTGGCCGTCTGGGCTTTGGGCGCAAAGGCCGATGGTGACGCGTCTGCG
CCGCCTCCTCGACCGGCCGAACTCGCAGCCGATATCAAGACGACTTTCCCCGATGCTGATATCCTCGGTGTGCGT
CTCATCAACGGCAGGGCGACCAAGGCGCTGGTCGAGGTGAAGAATAAAGAGGATGGTCCGATCAAGGTGGCTTAC
CTTGCTGGCGCCCTCGTCAGCACCAAGCCGCTACCGGCCAATGCGCCCGCTTACCAGGCCATCGTCCGTAACCTC
ACTGCCGTGCAGTACAATCTCGATATCGAGGCTGGCGAGGCAAAGGCGTTTCCCTTTTCCTTCATGCTTGATATG
CAGCCTCAGGATGTCCATCTTCAGCTCGTGGCTGTCGTCACCAACGCAAAGGGCAACCTCGTTCAGGTGCCCGCT
CACAACGGCACGGCATCTATAGTCGAGGCTCCCACGAGCTTCTTCGATCCCCAGATCATCTTCCTCTACTTCGTC
CTGTCGGCCGCCTTCGCCGGCACTCTCTACTTTGTCTACAAGACCTGGATCGAGGCCCTCTTCCCGCAGACCAAG
CACATTAAGCCGGCTAAGAAAAGCAAAAAGACGGCCGACGCCGACGCCGCTCTCTCGGGTGCCGAGTCGACGGCC
GTATCGCCGGGCGCGGGCAAGACGTACGACGAGAGCTGGATCCCCGACCATCACATCAAGCCTCCCGTCGCCAAG
CGCGTCAAGTCGGGCGTCGGCAGCAAGAAGAAGGGTGTCGAA
Transcript >Ophio5|833
ATGCTCTTCTCTCCTCTGCTGGCCCTCGTGGCCGTCTGGGCTTTGGGCGCAAAGGCCGATGGTGACGCGTCTGCG
CCGCCTCCTCGACCGGCCGAACTCGCAGCCGATATCAAGACGACTTTCCCCGATGCTGATATCCTCGGTGTGCGT
CTCATCAACGGCAGGGCGACCAAGGCGCTGGTCGAGGTGAAGAATAAAGAGGATGGTCCGATCAAGGTGGCTTAC
CTTGCTGGCGCCCTCGTCAGCACCAAGCCGCTACCGGCCAATGCGCCCGCTTACCAGGCCATCGTCCGTAACCTC
ACTGCCGTGCAGTACAATCTCGATATCGAGGCTGGCGAGGCAAAGGCGTTTCCCTTTTCCTTCATGCTTGATATG
CAGCCTCAGGATGTCCATCTTCAGCTCGTGGCTGTCGTCACCAACGCAAAGGGCAACCTCGTTCAGGTGCCCGCT
CACAACGGCACGGCATCTATAGTCGAGGCTCCCACGAGCTTCTTCGATCCCCAGATCATCTTCCTCTACTTCGTC
CTGTCGGCCGCCTTCGCCGGCACTCTCTACTTTGTCTACAAGACCTGGATCGAGGCCCTCTTCCCGCAGACCAAG
CACATTAAGCCGGCTAAGAAAAGCAAAAAGACGGCCGACGCCGACGCCGCTCTCTCGGGTGCCGAGTCGACGGCC
GTATCGCCGGGCGCGGGCAAGACGTACGACGAGAGCTGGATCCCCGACCATCACATCAAGCCTCCCGTCGCCAAG
CGCGTCAAGTCGGGCGTCGGCAGCAAGAAGAAGGGTGTCGAATAG
Gene >Ophio5|833
ATGCTCTTCTCTCCTCTGCTGGCCCTCGTGGCCGTCTGGGCTTTGGGCGCAAAGGTGAGGGAATTGGTTTTTTTT
TGGGGGGGGGGGAGGGCAGGGGGCTTGGCGTTTGTCGACGGTGCTCTTTTGGGACCTTTTTTTTTTTCCTTTCGA
AAGTCATGTTCCATTGTCTCTCTTGTCTTTTTTGCTTGGCTTTGTCTTGGCCTCTTGTTTTTCTCTACCTTTTTC
TTTTTATGACGATGAGCTGAATGTCTTCTAGGCCGATGGTGACGCGTCTGCGCCGCCTCCTCGACCGGCCGAACT
CGCAGCCGATATCAAGACGACTTTCCCCGATGCTGATATCCTCGGTGTGCGTCTCATCAACGGCAGGGCGACCAA
GGCGCTGGTCGAGGTGAAGAATAAAGAGGATGGTCCGATCAAGGTGGCTTACCTTGCTGGCGCCCTCGTCAGCAC
CAAGCCGCTACCGGCCAATGCGCCCGCTTACCAGGCCATCGTCCGTAACCTCACTGCCGTGCAGTACAATCTCGA
TATCGAGGCTGGCGAGGCAAAGGCGTTTCCCTTTTCCTTCATGCTTGATATGCAGCCTCAGGATGTCCATCTTCA
GCTCGTGGCTGTCGTCACCAACGCAAAGGGCAACCTCGTTCAGGTGCCCGCTCACAACGGCACGGCATCTATAGT
CGAGGCTCCCACGAGCTTCTTCGATCCCCAGATGTGCGTATTTTGGTTTTTTAACTCCAATTTTCCTTGTCTCTC
TCTTGTCTCGACCAAGTTTATGCTAAGTCGTCGCGCAGCATCTTCCTCTACTTCGTCCTGTCGGCCGCCTTCGCC
GGCACTCTCTACTTTGTCTACAAGACCTGGATCGAGGCCCTCTTCCCGCAGACCAAGCACATTAAGCCGGCTAAG
AAAAGCAAAAAGACGGCCGACGCCGACGCCGCTCTCTCGGGTGCCGAGTCGACGGCCGTATCGCCGGGCGCGGGC
AAGACGTACGACGAGAGCTGGATCCCCGACCATCACATCAAGCCTCCCGTCGCCAAGCGCGTCAAGTCGGGCGTC
GGCAGCAAGAAGAAGGGTGTCGAATAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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