Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|833
Gene name
Locationscaffold_124:22266..23343
Strand+
Gene length (bp)1077
Transcript length (bp)795
Coding sequence length (bp)792
Protein length (aa) 264

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF03896 TRAP_alpha Translocon-associated protein (TRAP), alpha subunit 2.2E-06 92 244

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|C5M501|IR222_CANTT Increased recombination centers protein 22-2 OS=Candida tropicalis (strain ATCC MYA-3404 / T1) GN=IRC22-2 PE=3 SV=1 1 245 2.0E-18
sp|B9WCP3|IRC22_CANDC Increased recombination centers protein 22 OS=Candida dubliniensis (strain CD36 / ATCC MYA-646 / CBS 7987 / NCPF 3949 / NRRL Y-17841) GN=IRC22 PE=3 SV=1 53 253 4.0E-18
sp|Q59YF4|IR221_CANAL Increased recombination centers protein 22-1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=IRC22-1 PE=3 SV=1 53 253 1.0E-14
sp|C4YKP5|IR221_CANAW Increased recombination centers protein 22-1 OS=Candida albicans (strain WO-1) GN=IRC22-1 PE=3 SV=1 53 253 3.0E-14
sp|P0CH79|IR222_CANAW Increased recombination centers protein 22-2 OS=Candida albicans (strain WO-1) GN=IRC22-2 PE=3 SV=1 53 253 3.0E-14
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Swissprot ID Swissprot Description Start End E-value
sp|C5M501|IR222_CANTT Increased recombination centers protein 22-2 OS=Candida tropicalis (strain ATCC MYA-3404 / T1) GN=IRC22-2 PE=3 SV=1 1 245 2.0E-18
sp|B9WCP3|IRC22_CANDC Increased recombination centers protein 22 OS=Candida dubliniensis (strain CD36 / ATCC MYA-646 / CBS 7987 / NCPF 3949 / NRRL Y-17841) GN=IRC22 PE=3 SV=1 53 253 4.0E-18
sp|Q59YF4|IR221_CANAL Increased recombination centers protein 22-1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=IRC22-1 PE=3 SV=1 53 253 1.0E-14
sp|C4YKP5|IR221_CANAW Increased recombination centers protein 22-1 OS=Candida albicans (strain WO-1) GN=IRC22-1 PE=3 SV=1 53 253 3.0E-14
sp|P0CH79|IR222_CANAW Increased recombination centers protein 22-2 OS=Candida albicans (strain WO-1) GN=IRC22-2 PE=3 SV=1 53 253 3.0E-14
sp|A5DYV2|IRC22_LODEL Increased recombination centers protein 22 OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) GN=IRC22 PE=3 SV=1 53 252 6.0E-14
sp|Q59XW9|IR222_CANAL Increased recombination centers protein 22-2 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=IRC22-2 PE=3 SV=1 53 253 7.0E-14
sp|C5M580|IR221_CANTT Increased recombination centers protein 22-1 OS=Candida tropicalis (strain ATCC MYA-3404 / T1) GN=IRC22-1 PE=3 SV=1 1 245 6.0E-12
sp|Q6BW93|IRC22_DEBHA Increased recombination centers protein 22 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=IRC22 PE=3 SV=1 50 251 4.0E-11
sp|A3LU17|IRC22_PICST Increased recombination centers protein 22 OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545) GN=IRC22 PE=3 SV=1 53 251 8.0E-09
sp|C4R0M5|IRC22_PICPG Increased recombination centers protein 22 OS=Komagataella pastoris (strain GS115 / ATCC 20864) GN=IRC22 PE=3 SV=1 49 216 1.0E-07
sp|A5DEU9|IRC22_PICGU Increased recombination centers protein 22 OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) GN=IRC22 PE=3 SV=1 50 251 1.0E-05
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GO

GO Term Description Terminal node
GO:0005789 endoplasmic reticulum membrane Yes
GO:0110165 cellular anatomical entity No
GO:0016020 membrane No
GO:0005575 cellular_component No
GO:0031090 organelle membrane No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
Yes 1 - 20 0.45

Transmembrane Domains

Domain # Start End Length
1 169 188 19

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Click here for more information

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|833
MLFSPLLALVAVWALGAKADGDASAPPPRPAELAADIKTTFPDADILGVRLINGRATKALVEVKNKEDGPIKVAY
LAGALVSTKPLPANAPAYQAIVRNLTAVQYNLDIEAGEAKAFPFSFMLDMQPQDVHLQLVAVVTNAKGNLVQVPA
HNGTASIVEAPTSFFDPQIIFLYFVLSAAFAGTLYFVYKTWIEALFPQTKHIKPAKKSKKTADADAALSGAESTA
VSPGAGKTYDESWIPDHHIKPPVAKRVKSGVGSKKKGVE
Coding >Ophio5|833
ATGCTCTTCTCTCCTCTGCTGGCCCTCGTGGCCGTCTGGGCTTTGGGCGCAAAGGCCGATGGTGACGCGTCTGCG
CCGCCTCCTCGACCGGCCGAACTCGCAGCCGATATCAAGACGACTTTCCCCGATGCTGATATCCTCGGTGTGCGT
CTCATCAACGGCAGGGCGACCAAGGCGCTGGTCGAGGTGAAGAATAAAGAGGATGGTCCGATCAAGGTGGCTTAC
CTTGCTGGCGCCCTCGTCAGCACCAAGCCGCTACCGGCCAATGCGCCCGCTTACCAGGCCATCGTCCGTAACCTC
ACTGCCGTGCAGTACAATCTCGATATCGAGGCTGGCGAGGCAAAGGCGTTTCCCTTTTCCTTCATGCTTGATATG
CAGCCTCAGGATGTCCATCTTCAGCTCGTGGCTGTCGTCACCAACGCAAAGGGCAACCTCGTTCAGGTGCCCGCT
CACAACGGCACGGCATCTATAGTCGAGGCTCCCACGAGCTTCTTCGATCCCCAGATCATCTTCCTCTACTTCGTC
CTGTCGGCCGCCTTCGCCGGCACTCTCTACTTTGTCTACAAGACCTGGATCGAGGCCCTCTTCCCGCAGACCAAG
CACATTAAGCCGGCTAAGAAAAGCAAAAAGACGGCCGACGCCGACGCCGCTCTCTCGGGTGCCGAGTCGACGGCC
GTATCGCCGGGCGCGGGCAAGACGTACGACGAGAGCTGGATCCCCGACCATCACATCAAGCCTCCCGTCGCCAAG
CGCGTCAAGTCGGGCGTCGGCAGCAAGAAGAAGGGTGTCGAA
Transcript >Ophio5|833
ATGCTCTTCTCTCCTCTGCTGGCCCTCGTGGCCGTCTGGGCTTTGGGCGCAAAGGCCGATGGTGACGCGTCTGCG
CCGCCTCCTCGACCGGCCGAACTCGCAGCCGATATCAAGACGACTTTCCCCGATGCTGATATCCTCGGTGTGCGT
CTCATCAACGGCAGGGCGACCAAGGCGCTGGTCGAGGTGAAGAATAAAGAGGATGGTCCGATCAAGGTGGCTTAC
CTTGCTGGCGCCCTCGTCAGCACCAAGCCGCTACCGGCCAATGCGCCCGCTTACCAGGCCATCGTCCGTAACCTC
ACTGCCGTGCAGTACAATCTCGATATCGAGGCTGGCGAGGCAAAGGCGTTTCCCTTTTCCTTCATGCTTGATATG
CAGCCTCAGGATGTCCATCTTCAGCTCGTGGCTGTCGTCACCAACGCAAAGGGCAACCTCGTTCAGGTGCCCGCT
CACAACGGCACGGCATCTATAGTCGAGGCTCCCACGAGCTTCTTCGATCCCCAGATCATCTTCCTCTACTTCGTC
CTGTCGGCCGCCTTCGCCGGCACTCTCTACTTTGTCTACAAGACCTGGATCGAGGCCCTCTTCCCGCAGACCAAG
CACATTAAGCCGGCTAAGAAAAGCAAAAAGACGGCCGACGCCGACGCCGCTCTCTCGGGTGCCGAGTCGACGGCC
GTATCGCCGGGCGCGGGCAAGACGTACGACGAGAGCTGGATCCCCGACCATCACATCAAGCCTCCCGTCGCCAAG
CGCGTCAAGTCGGGCGTCGGCAGCAAGAAGAAGGGTGTCGAATAG
Gene >Ophio5|833
ATGCTCTTCTCTCCTCTGCTGGCCCTCGTGGCCGTCTGGGCTTTGGGCGCAAAGGTGAGGGAATTGGTTTTTTTT
TGGGGGGGGGGGAGGGCAGGGGGCTTGGCGTTTGTCGACGGTGCTCTTTTGGGACCTTTTTTTTTTTCCTTTCGA
AAGTCATGTTCCATTGTCTCTCTTGTCTTTTTTGCTTGGCTTTGTCTTGGCCTCTTGTTTTTCTCTACCTTTTTC
TTTTTATGACGATGAGCTGAATGTCTTCTAGGCCGATGGTGACGCGTCTGCGCCGCCTCCTCGACCGGCCGAACT
CGCAGCCGATATCAAGACGACTTTCCCCGATGCTGATATCCTCGGTGTGCGTCTCATCAACGGCAGGGCGACCAA
GGCGCTGGTCGAGGTGAAGAATAAAGAGGATGGTCCGATCAAGGTGGCTTACCTTGCTGGCGCCCTCGTCAGCAC
CAAGCCGCTACCGGCCAATGCGCCCGCTTACCAGGCCATCGTCCGTAACCTCACTGCCGTGCAGTACAATCTCGA
TATCGAGGCTGGCGAGGCAAAGGCGTTTCCCTTTTCCTTCATGCTTGATATGCAGCCTCAGGATGTCCATCTTCA
GCTCGTGGCTGTCGTCACCAACGCAAAGGGCAACCTCGTTCAGGTGCCCGCTCACAACGGCACGGCATCTATAGT
CGAGGCTCCCACGAGCTTCTTCGATCCCCAGATGTGCGTATTTTGGTTTTTTAACTCCAATTTTCCTTGTCTCTC
TCTTGTCTCGACCAAGTTTATGCTAAGTCGTCGCGCAGCATCTTCCTCTACTTCGTCCTGTCGGCCGCCTTCGCC
GGCACTCTCTACTTTGTCTACAAGACCTGGATCGAGGCCCTCTTCCCGCAGACCAAGCACATTAAGCCGGCTAAG
AAAAGCAAAAAGACGGCCGACGCCGACGCCGCTCTCTCGGGTGCCGAGTCGACGGCCGTATCGCCGGGCGCGGGC
AAGACGTACGACGAGAGCTGGATCCCCGACCATCACATCAAGCCTCCCGTCGCCAAGCGCGTCAAGTCGGGCGTC
GGCAGCAAGAAGAAGGGTGTCGAATAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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