Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|8321
Gene name
Locationscaffold_906:2275..4430
Strand-
Gene length (bp)2155
Transcript length (bp)1782
Coding sequence length (bp)1779
Protein length (aa) 593

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00172 Zn_clus Fungal Zn(2)-Cys(6) binuclear cluster domain 3.6E-06 30 63

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|O13360|FLUF_NEUCR Conidial development protein fluffy OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=fl PE=2 SV=1 176 517 5.0E-26
sp|P28349|NIT4_NEUCR Nitrogen assimilation transcription factor nit-4 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=nit-4 PE=3 SV=2 23 509 2.0E-20
sp|P28348|NIRA_EMENI Nitrogen assimilation transcription factor nirA OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=nirA PE=3 SV=1 23 523 3.0E-20
sp|O13360|FLUF_NEUCR Conidial development protein fluffy OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=fl PE=2 SV=1 21 92 4.0E-12
sp|O74915|YJ74_SCHPO Uncharacterized transcriptional regulatory protein C757.04 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC757.04 PE=3 SV=2 21 316 2.0E-07

GO

GO Term Description Terminal node
GO:0006355 regulation of transcription, DNA-templated Yes
GO:0008270 zinc ion binding Yes
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific Yes
GO:0008150 biological_process No
GO:0051252 regulation of RNA metabolic process No
GO:0060255 regulation of macromolecule metabolic process No
GO:0019222 regulation of metabolic process No
GO:0050794 regulation of cellular process No
GO:0140110 transcription regulator activity No
GO:0031323 regulation of cellular metabolic process No
GO:0065007 biological regulation No
GO:0046872 metal ion binding No
GO:0010468 regulation of gene expression No
GO:0043167 ion binding No
GO:0043169 cation binding No
GO:0003674 molecular_function No
GO:0019219 regulation of nucleobase-containing compound metabolic process No
GO:0051171 regulation of nitrogen compound metabolic process No
GO:0005488 binding No
GO:0080090 regulation of primary metabolic process No
GO:0009889 regulation of biosynthetic process No
GO:0050789 regulation of biological process No
GO:0003700 DNA-binding transcription factor activity No
GO:1903506 regulation of nucleic acid-templated transcription No
GO:2001141 regulation of RNA biosynthetic process No
GO:0046914 transition metal ion binding No
GO:0010556 regulation of macromolecule biosynthetic process No
GO:0031326 regulation of cellular biosynthetic process No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 29 0.45

Transmembrane Domains

(None)

Transcription Factor Class

Transcription Factor Class
(based on PFAM domains)
Fungal Specific TF

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
SC16a Pure fungal culture 21.01 10.29 31.73
CcL In ants, during behavior modification 5.92 1.97 9.86
CcD In ants, recently dead 5.08 1.52 8.64

Differential expression

Label1 Label2 Q-value Significant difference
SC16a CcL 0.000286 yes
SC16a CcD 0.000286 yes
CcL CcD 0.698766 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|8321
MSTILPATCSTVCNRRRQMKMPRRVQIRMACQRCRHKRAKCDGRAPCKRCNEAGELCFYDSNQRETKDELRAEIK
RLKRRNEENDRILQAVFTTGGVEASDATTIHNPEGWSKQDDVVVVQPRDEVGDPAVCARCQARLPMTPVSSPAGS
AGSEMSVSLWSPLSLDGAHNSHMDMWTRTQWSVAAVRKLLDDLHTWDYFPYCLLQRDLFLRDYHSGSTRFCSSAL
VYALLSMAMRVVNENGKDVESPGPDWSGSKAFFDEAEAMIRTIETPGSLPDVQALGILSLYRASCGDDDGAQELA
DLFATNAADLCAQGEPGTTDEKGEEYLKAQAMTYCGAVSLTRLLRLTTVRLPGLAAPYNLPDEFIVLDITIDDDE
TSVTAPDFLDNRTLQLLPMKLFQLTEWVYKLLSTSASKDGRFNTRGLFAVYTKCLNWYESIFSLKTEGSDTPFVL
FTHIYYQYCLLSLFRPFAHLSLSDSDIQPQEIYLQAAKSIIELAKSYRNMFSLRRVCSFIPCFVYAVGVAGLPTP
FSCDGAAPLNAQPRSSRRTTVDGDRVQPRRDFSRVSTVEETILAQVAELQAQMGWPKPTNSGDRQSRL
Coding >Ophio5|8321
ATGAGCACCATTCTTCCAGCCACATGCTCGACAGTTTGCAACAGACGCAGGCAGATGAAGATGCCGCGTCGGGTT
CAGATACGGATGGCCTGTCAACGCTGCCGTCACAAAAGAGCAAAGTGTGACGGTCGTGCGCCTTGCAAGAGATGT
AACGAGGCCGGCGAGCTATGCTTCTACGATTCGAACCAGCGCGAGACCAAGGACGAACTGCGAGCCGAGATCAAA
CGTCTGAAGCGGAGGAACGAGGAAAATGACCGGATCCTTCAAGCCGTCTTCACCACCGGCGGCGTCGAAGCAAGC
GATGCCACCACCATTCACAATCCTGAAGGGTGGAGCAAGCAGGATGATGTCGTCGTCGTCCAGCCGAGAGACGAG
GTCGGCGATCCGGCCGTCTGCGCGCGTTGTCAGGCCCGGCTGCCGATGACGCCCGTCTCCTCGCCTGCGGGCTCT
GCAGGTTCCGAGATGTCCGTCTCACTCTGGTCTCCCCTTTCCCTCGATGGGGCGCACAATTCGCACATGGACATG
TGGACACGGACGCAATGGTCGGTAGCCGCGGTGCGAAAGCTACTAGACGATCTTCACACTTGGGATTATTTTCCC
TACTGTCTCTTACAAAGGGACCTGTTCCTGCGTGACTACCATAGCGGCTCGACACGGTTTTGTTCCTCTGCCCTG
GTCTATGCTCTGCTCTCGATGGCGATGCGTGTCGTCAACGAAAACGGCAAGGACGTGGAGAGTCCCGGTCCGGAC
TGGTCCGGAAGCAAGGCCTTCTTCGACGAGGCCGAGGCCATGATCCGGACAATCGAAACCCCTGGTAGCCTGCCC
GATGTCCAGGCGCTTGGCATCCTCTCCTTATATCGGGCCAGCTGCGGAGACGACGACGGGGCTCAGGAGCTGGCC
GACCTGTTCGCCACCAACGCCGCCGACCTCTGTGCCCAGGGGGAGCCGGGCACAACGGACGAGAAGGGTGAGGAA
TATCTAAAGGCGCAAGCAATGACGTACTGCGGCGCCGTGTCCTTGACACGGCTGCTTCGACTCACGACGGTACGC
CTCCCGGGCCTTGCTGCGCCGTACAACCTGCCGGACGAATTCATTGTCCTTGACATTACGATAGATGATGACGAA
ACATCTGTCACTGCTCCAGATTTCCTGGACAACCGCACCCTCCAGCTTCTCCCCATGAAACTATTCCAGCTTACC
GAGTGGGTGTACAAGCTTCTCTCGACGAGCGCCTCAAAGGATGGACGGTTCAATACACGGGGACTCTTTGCCGTT
TATACCAAATGTCTCAACTGGTACGAGAGCATCTTCTCTCTCAAGACGGAGGGTAGTGACACGCCATTCGTGCTA
TTTACTCACATATACTACCAGTATTGTCTTCTCTCCCTCTTCCGACCCTTCGCCCATCTCTCCTTGTCCGACTCG
GATATCCAACCACAGGAGATTTACCTGCAGGCGGCCAAGTCCATCATCGAACTGGCCAAGTCTTATAGGAACATG
TTCTCTCTCCGACGCGTATGCAGCTTCATCCCATGCTTCGTGTACGCCGTTGGCGTCGCCGGCCTCCCCACGCCG
TTCTCTTGCGACGGTGCGGCCCCTCTCAACGCCCAGCCGCGTTCCAGCCGGCGCACAACCGTCGACGGTGACCGT
GTCCAGCCGCGCCGAGATTTCTCACGAGTTTCTACCGTTGAGGAGACCATATTGGCTCAGGTGGCCGAACTGCAG
GCACAGATGGGCTGGCCCAAGCCAACCAACTCAGGAGACAGACAGAGTCGTCTC
Transcript >Ophio5|8321
ATGAGCACCATTCTTCCAGCCACATGCTCGACAGTTTGCAACAGACGCAGGCAGATGAAGATGCCGCGTCGGGTT
CAGATACGGATGGCCTGTCAACGCTGCCGTCACAAAAGAGCAAAGTGTGACGGTCGTGCGCCTTGCAAGAGATGT
AACGAGGCCGGCGAGCTATGCTTCTACGATTCGAACCAGCGCGAGACCAAGGACGAACTGCGAGCCGAGATCAAA
CGTCTGAAGCGGAGGAACGAGGAAAATGACCGGATCCTTCAAGCCGTCTTCACCACCGGCGGCGTCGAAGCAAGC
GATGCCACCACCATTCACAATCCTGAAGGGTGGAGCAAGCAGGATGATGTCGTCGTCGTCCAGCCGAGAGACGAG
GTCGGCGATCCGGCCGTCTGCGCGCGTTGTCAGGCCCGGCTGCCGATGACGCCCGTCTCCTCGCCTGCGGGCTCT
GCAGGTTCCGAGATGTCCGTCTCACTCTGGTCTCCCCTTTCCCTCGATGGGGCGCACAATTCGCACATGGACATG
TGGACACGGACGCAATGGTCGGTAGCCGCGGTGCGAAAGCTACTAGACGATCTTCACACTTGGGATTATTTTCCC
TACTGTCTCTTACAAAGGGACCTGTTCCTGCGTGACTACCATAGCGGCTCGACACGGTTTTGTTCCTCTGCCCTG
GTCTATGCTCTGCTCTCGATGGCGATGCGTGTCGTCAACGAAAACGGCAAGGACGTGGAGAGTCCCGGTCCGGAC
TGGTCCGGAAGCAAGGCCTTCTTCGACGAGGCCGAGGCCATGATCCGGACAATCGAAACCCCTGGTAGCCTGCCC
GATGTCCAGGCGCTTGGCATCCTCTCCTTATATCGGGCCAGCTGCGGAGACGACGACGGGGCTCAGGAGCTGGCC
GACCTGTTCGCCACCAACGCCGCCGACCTCTGTGCCCAGGGGGAGCCGGGCACAACGGACGAGAAGGGTGAGGAA
TATCTAAAGGCGCAAGCAATGACGTACTGCGGCGCCGTGTCCTTGACACGGCTGCTTCGACTCACGACGGTACGC
CTCCCGGGCCTTGCTGCGCCGTACAACCTGCCGGACGAATTCATTGTCCTTGACATTACGATAGATGATGACGAA
ACATCTGTCACTGCTCCAGATTTCCTGGACAACCGCACCCTCCAGCTTCTCCCCATGAAACTATTCCAGCTTACC
GAGTGGGTGTACAAGCTTCTCTCGACGAGCGCCTCAAAGGATGGACGGTTCAATACACGGGGACTCTTTGCCGTT
TATACCAAATGTCTCAACTGGTACGAGAGCATCTTCTCTCTCAAGACGGAGGGTAGTGACACGCCATTCGTGCTA
TTTACTCACATATACTACCAGTATTGTCTTCTCTCCCTCTTCCGACCCTTCGCCCATCTCTCCTTGTCCGACTCG
GATATCCAACCACAGGAGATTTACCTGCAGGCGGCCAAGTCCATCATCGAACTGGCCAAGTCTTATAGGAACATG
TTCTCTCTCCGACGCGTATGCAGCTTCATCCCATGCTTCGTGTACGCCGTTGGCGTCGCCGGCCTCCCCACGCCG
TTCTCTTGCGACGGTGCGGCCCCTCTCAACGCCCAGCCGCGTTCCAGCCGGCGCACAACCGTCGACGGTGACCGT
GTCCAGCCGCGCCGAGATTTCTCACGAGTTTCTACCGTTGAGGAGACCATATTGGCTCAGGTGGCCGAACTGCAG
GCACAGATGGGCTGGCCCAAGCCAACCAACTCAGGAGACAGACAGAGTCGTCTCTAA
Gene >Ophio5|8321
ATGAGCACCATTCTTCCAGCCACATGCTCGACAGTTTGCAACAGACGCAGGCAGATGAAGATGCCGCGTCGGGTT
CAGATACGGATGGCCTGTCAACGCTGCCGTCACAAAAGAGCAAAGGTTAGTGATGTCACCCATGGCCGGGAATCA
GCTCCCGTCCAACCCCTTTCCCCCCCCTGACTGAACAAGGTTGGTTGACTCACAGACGCGGCTTTCCCGTCGCCT
CCCCTTTTTCTTTCATTGTAGTGTGACGGTCGTGCGCCTTGCAAGAGATGTAACGAGGCCGGCGAGCTATGCTTC
TACGATTCGAACCAGCGCGAGACCAAGGACGAACTGCGAGCCGAGATCAAACGTCTGAAGCGGAGGAACGAGGAA
AATGACCGGATCCTTCAAGCCGTCTTCACCACCGGCGGCGTCGAAGCAAGCGATGCCACCACCATTCACAATCCT
GAAGGGTGGAGCAAGCAGGATGATGTCGTCGTCGTCCAGCCGAGAGACGAGGTCGGCGATCCGGCCGTCTGCGCG
CGTTGTCAGGCCCGGCTGCCGATGACGCCCGTCTCCTCGCCTGCGGGCTCTGCAGGTTCCGAGATGTCCGTCTCA
CTCTGGTCTCCCCTTTCCCTCGATGGGGCGCACAATTCGCACATGGACATGTGGACACGGACGCAATGGTCGGTA
GCCGCGGTGCGAAAGCTACTAGACGATCTTCACACTTGGGATTATTTTCCCTACTGTCTCTTACAAAGGGACCTG
TTCCTGCGTGACTACCATAGCGGCTCGACACGGTTTTGTTCCTCTGCCCTGGTCTATGCTCTGCTCTCGATGGCG
ATGCGTGTCGTCAACGAAAACGGCAAGGACGTGGAGAGTCCCGGTCCGGACTGGTCCGGAAGCAAGGCCTTCTTC
GACGAGGCCGAGGCCATGATCCGGACAATCGAAACCCCTGGTAGCCTGCCCGATGTCCAGGCGCTTGGCATCCTC
TCCTTATATCGGGCCAGCTGCGGAGACGACGACGGGGCTCAGGAGCTGGCCGACCTGTTCGCCACCAACGCCGCC
GACCTCTGTGCCCAGGGGGAGCCGGGCACAACGGACGAGAAGGGTGAGGAATATCTAAAGGCGCAAGCAATGACG
TACTGCGGCGCCGTGTCCTTGACACGGTGTGTAGAGCCATTATTTCCCGTATCGATCCGTCCGAATCAGCGGCTA
CTGGTCTAACTCTCTCGCGCAGGCTGCTTCGACTCACGACGGTACGCCTCCCGGGCCTTGCTGCGCCGTACAACC
TGCCGGACGAATTCATTGTCCTTGACATTACGATAGATGATGACGAAACATCTGTCACTGCTCCAGGTGTGTTCG
AGACGGCAATTCGAGGTGATGGAAGATGAGGCAGCTGTGGATGCACCGCGGATCTCAGAATAACACGGCTGCAGA
TTTCCTGGACAACCGCACCCTCCAGCTTCTCCCCATGAAACTATTCCAGCTTACCGAGTGGGTGTACAAGCTTCT
CTCGACGAGCGCCTCAAAGGATGGACGGTTCAATACACGGGGACTCTTTGCCGTTTATACCAAATGTCTCAACTG
GTACGAGAGCATCTTCTCTCTCAAGACGGAGGGTAGTGACACGCCATTCGTGCTATTTACTCAGTGAGCCTCTCC
TTTCCGCGACCTGCTTTTTGTCGCGTACCTTCATTTTTTCTTCCGTCTCGAGGTGGCAAAACGTAGCTCTGACAG
TCACAGCATATACTACCAGTATTGTCTTCTCTCCCTCTTCCGACCCTTCGCCCATCTCTCCTTGTCCGACTCGGA
TATCCAACCACAGGAGATTTACCTGCAGGCGGCCAAGTCCATCATCGAACTGGCCAAGTCTTATAGGAACATGTT
CTCTCTCCGACGCGTATGCAGCTTCATCCCATGCTTCGTGTACGCCGTTGGCGTCGCCGGCCTCCCCACGCCGTT
CTCTTGCGACGGTGCGGCCCCTCTCAACGCCCAGCCGCGTTCCAGCCGGCGCACAACCGTCGACGGTGACCGTGT
CCAGCCGCGCCGAGATTTCTCACGAGTTTCTACCGTTGAGGAGACCATATTGGCTCAGGTGGCCGAACTGCAGGC
ACAGATGGGCTGGCCCAAGCCAACCAACTCAGGAGACAGACAGAGTCGTCTCTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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