Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|8318
Gene name
Locationscaffold_905:23..1231
Strand+
Gene length (bp)1208
Transcript length (bp)954
Coding sequence length (bp)951
Protein length (aa) 317

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF13520 AA_permease_2 Amino acid permease 5.4E-35 36 292
PF00324 AA_permease Amino acid permease 1.9E-19 35 305

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|P36029|TPO5_YEAST Polyamine transporter TPO5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TPO5 PE=1 SV=1 28 312 8.0E-46
sp|P19807|HNM1_YEAST Choline transport protein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=HNM1 PE=1 SV=1 28 309 3.0E-41
sp|O60113|YG64_SCHPO Uncharacterized amino-acid permease C15C4.04c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC15C4.04c PE=3 SV=1 28 315 1.0E-39
sp|Q9ZU50|BAT1_ARATH Amino-acid permease BAT1 OS=Arabidopsis thaliana GN=BAT1 PE=2 SV=2 22 315 2.0E-32
sp|O59942|AAP2_NEUCR Amino-acid permease 2 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=aap-2 PE=2 SV=2 24 312 3.0E-32
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Swissprot ID Swissprot Description Start End E-value
sp|P36029|TPO5_YEAST Polyamine transporter TPO5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TPO5 PE=1 SV=1 28 312 8.0E-46
sp|P19807|HNM1_YEAST Choline transport protein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=HNM1 PE=1 SV=1 28 309 3.0E-41
sp|O60113|YG64_SCHPO Uncharacterized amino-acid permease C15C4.04c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC15C4.04c PE=3 SV=1 28 315 1.0E-39
sp|Q9ZU50|BAT1_ARATH Amino-acid permease BAT1 OS=Arabidopsis thaliana GN=BAT1 PE=2 SV=2 22 315 2.0E-32
sp|O59942|AAP2_NEUCR Amino-acid permease 2 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=aap-2 PE=2 SV=2 24 312 3.0E-32
sp|B9EXZ6|BAT1_ORYSJ Amino-acid permease BAT1 homolog OS=Oryza sativa subsp. japonica GN=BAT1 PE=2 SV=1 27 287 6.0E-29
sp|P32837|UGA4_YEAST GABA-specific permease OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UGA4 PE=1 SV=1 12 293 4.0E-24
sp|O74248|GPT1_CANAX Putative polyamine transporter OS=Candida albicans GN=GPT1 PE=3 SV=1 22 312 1.0E-22
sp|Q09887|YC9D_SCHPO Uncharacterized amino-acid permease C584.13 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC584.13 PE=3 SV=1 25 312 4.0E-21
sp|Q9US40|YFZ1_SCHPO Uncharacterized amino-acid permease C1039.01 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC1039.01 PE=3 SV=1 43 312 8.0E-21
sp|Q9C0Z0|YKM2_SCHPO Uncharacterized amino-acid permease PB24D3.02c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAPB24D3.02c PE=3 SV=1 27 315 8.0E-19
sp|O74537|YCQ4_SCHPO Uncharacterized amino-acid permease C74.04 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC74.04 PE=3 SV=1 24 315 7.0E-17
sp|Q10087|YAO8_SCHPO Uncharacterized amino-acid permease C11D3.08c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC11D3.08c PE=3 SV=1 19 317 2.0E-16
sp|P53744|BIO5_YEAST 7-keto 8-aminopelargonic acid transporter OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=BIO5 PE=1 SV=1 33 292 1.0E-14
sp|Q9UT18|THI9_SCHPO Thiamine transporter thi9 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=thi9 PE=1 SV=1 69 286 1.0E-11
sp|O59813|YCT3_SCHPO Uncharacterized amino-acid permease C794.03 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC794.03 PE=2 SV=1 9 290 1.0E-11
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GO

GO Term Description Terminal node
GO:0022857 transmembrane transporter activity Yes
GO:0016020 membrane Yes
GO:0055085 transmembrane transport Yes
GO:0009987 cellular process No
GO:0051234 establishment of localization No
GO:0110165 cellular anatomical entity No
GO:0008150 biological_process No
GO:0005215 transporter activity No
GO:0005575 cellular_component No
GO:0003674 molecular_function No
GO:0051179 localization No
GO:0006810 transport No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 24 0.5

Transmembrane Domains

Domain # Start End Length
1 48 70 22
2 83 105 22
3 129 151 22
4 183 205 22
5 215 237 22
6 244 266 22
7 281 303 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
SC16a Pure fungal culture 166.54 90.39 242.70
CcL In ants, during behavior modification 50.11 24.28 75.95
CcD In ants, recently dead 33.75 15.45 52.05

Differential expression

Label1 Label2 Q-value Significant difference
SC16a CcL 0.000286 yes
SC16a CcD 0.000286 yes
CcL CcD 0.143021 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|8318
MPCPHWATDGSLYWIRLPSTGLARNGRRSAHFVFTHFEANSGWPSGWSFFVGLLHAGYATSSTGMVISMCEEVQK
PSVQVPKALVGTIFLNTVAGCLFLIPLVFVLPDIKTLISVSAGQPVPFIIKDAVGSSVGAFCLLIPLLVLGVLCG
IGCTTASSRCTWAFARDGAIPGSRWWMKVNHKLDVPFNAMILSMVVQVILGLIYFGSTAAFSAFTGVGVICLTAS
YAVPIAISLITGRKQVRTGAFYLGPLGTVCNVVAILWTLLAMPLFCMPLNVPVTATSANYAPAVFVVATAVSALW
YWAWGHKNYAGPPVQGE
Coding >Ophio5|8318
ATGCCGTGTCCGCACTGGGCAACCGATGGCTCCCTTTACTGGATACGGCTGCCGTCTACTGGACTCGCCCGCAAC
GGCCGCCGAAGCGCCCACTTCGTCTTCACCCACTTCGAGGCCAACTCGGGCTGGCCGAGCGGATGGTCCTTTTTC
GTGGGCCTCCTTCACGCTGGCTACGCCACCTCGTCTACCGGCATGGTCATCTCCATGTGTGAGGAGGTGCAGAAG
CCCTCGGTCCAGGTCCCCAAGGCGCTAGTCGGCACCATCTTCCTCAACACCGTGGCCGGCTGCCTATTTCTCATC
CCCCTCGTCTTCGTCCTTCCGGACATTAAGACGCTCATCAGCGTTTCAGCGGGCCAGCCGGTGCCCTTCATCATC
AAGGATGCCGTCGGCTCCTCTGTCGGCGCCTTTTGCCTTCTCATCCCCCTCCTCGTCCTCGGCGTCCTCTGTGGC
ATCGGATGCACGACGGCCTCTTCGCGCTGCACCTGGGCCTTTGCCCGCGACGGCGCCATCCCCGGTTCCCGGTGG
TGGATGAAAGTCAACCACAAGCTCGACGTGCCCTTCAACGCCATGATTCTGAGCATGGTGGTTCAAGTTATCCTC
GGCCTCATCTACTTTGGCTCCACAGCCGCCTTTAGCGCCTTCACCGGTGTTGGTGTCATCTGCCTGACCGCCTCG
TACGCCGTGCCCATCGCCATCAGCCTGATTACAGGCAGGAAGCAGGTCAGGACCGGCGCCTTCTATCTTGGCCCT
CTTGGCACCGTTTGCAACGTCGTTGCGATCCTGTGGACTCTACTGGCGATGCCTCTGTTCTGCATGCCGTTGAAC
GTCCCCGTCACGGCGACATCGGCCAACTACGCGCCGGCTGTCTTCGTCGTTGCCACGGCCGTCTCTGCACTTTGG
TACTGGGCATGGGGCCACAAGAACTACGCCGGCCCTCCTGTGCAAGGAGAG
Transcript >Ophio5|8318
ATGCCGTGTCCGCACTGGGCAACCGATGGCTCCCTTTACTGGATACGGCTGCCGTCTACTGGACTCGCCCGCAAC
GGCCGCCGAAGCGCCCACTTCGTCTTCACCCACTTCGAGGCCAACTCGGGCTGGCCGAGCGGATGGTCCTTTTTC
GTGGGCCTCCTTCACGCTGGCTACGCCACCTCGTCTACCGGCATGGTCATCTCCATGTGTGAGGAGGTGCAGAAG
CCCTCGGTCCAGGTCCCCAAGGCGCTAGTCGGCACCATCTTCCTCAACACCGTGGCCGGCTGCCTATTTCTCATC
CCCCTCGTCTTCGTCCTTCCGGACATTAAGACGCTCATCAGCGTTTCAGCGGGCCAGCCGGTGCCCTTCATCATC
AAGGATGCCGTCGGCTCCTCTGTCGGCGCCTTTTGCCTTCTCATCCCCCTCCTCGTCCTCGGCGTCCTCTGTGGC
ATCGGATGCACGACGGCCTCTTCGCGCTGCACCTGGGCCTTTGCCCGCGACGGCGCCATCCCCGGTTCCCGGTGG
TGGATGAAAGTCAACCACAAGCTCGACGTGCCCTTCAACGCCATGATTCTGAGCATGGTGGTTCAAGTTATCCTC
GGCCTCATCTACTTTGGCTCCACAGCCGCCTTTAGCGCCTTCACCGGTGTTGGTGTCATCTGCCTGACCGCCTCG
TACGCCGTGCCCATCGCCATCAGCCTGATTACAGGCAGGAAGCAGGTCAGGACCGGCGCCTTCTATCTTGGCCCT
CTTGGCACCGTTTGCAACGTCGTTGCGATCCTGTGGACTCTACTGGCGATGCCTCTGTTCTGCATGCCGTTGAAC
GTCCCCGTCACGGCGACATCGGCCAACTACGCGCCGGCTGTCTTCGTCGTTGCCACGGCCGTCTCTGCACTTTGG
TACTGGGCATGGGGCCACAAGAACTACGCCGGCCCTCCTGTGCAAGGAGAGTGA
Gene >Ophio5|8318
ATGCCGTGTCCGCACTGGGCAACCGATGGCTCCCTTTACTGGATGTGAGCCCCCCCCTTTTCGTCTGCCATTCTT
CCTGCCTGCTCTTCTACGCCCCCCCCCCCCCCCCCTTGACTTTCCACCTACTGACTCTCACTAGACGGCTGCCGT
CTACTGGACGTTTTGCGGCGCCATTGCCATCATGGTCACCATCCTTGCAGTCGCCCGCAACGGCCGCCGAAGCGC
CCACTTCGTCTTCACCCACTTCGAGGCCAACTCGGGCTGGCCGAGCGGATGGTCCTTTTTCGTGGGCCTCCTTCA
CGCTGGCTACGCCACCTCGTCTACCGGCATGGTCATCTCGTGAGCTTCCTTTATCCCATCGGCTCGGACCCCCCT
TCGAACCTGACCCTCGGCAGCATGTGTGAGGAGGTGCAGAAGCCCTCGGTCCAGGTCCCCAAGGCGCTAGTCGGC
ACCATCTTCCTCAACACCGTGGCCGGCTGCCTATTTCTCATCCCCCTCGTCTTCGTCCTTCCGGACATTAAGACG
CTCATCAGCGTTTCAGCGGGCCAGCCGGTGCCCTTCATCATCAAGGATGCCGTCGGCTCCTCTGTCGGCGCCTTT
TGCCTTCTCATCCCCCTCCTCGTCCTCGGCGTCCTCTGTGGCATCGGATGCACGACGGCCTCTTCGCGCTGCACC
TGGGCCTTTGCCCGCGACGGCGCCATCCCCGGTTCCCGGTGGTGGATGAAAGTCAACCACAAGCTCGACGTGCCC
TTCAACGCCATGATTCTGAGCATGGTGGTTCAAGTTATCCTCGGCCTCATCTACTTTGGCTCCACAGCCGCCTTT
AGCGCCTTCACCGGTGTTGGTGTCATCTGCCTGACCGCCTCGTACGCCGTGCCCATCGCCATCAGCCTGATTACA
GGCAGGAAGCAGGTCAGGACCGGCGCCTTCTATCTTGGCCCTCTTGGCACCGTTTGCAACGTCGTTGCGATCCGT
AAGTCGTCCCCGGTTGCCACCACTGCCCCCCCCACTAAGTCCAACTGCTGACCGTGTCAGTGTGGACTCTACTGG
CGATGCCTCTGTTCTGCATGCCGTTGAACGTCCCCGTCACGGCGACATCGGCCAACTACGCGCCGGCTGTCTTCG
TCGTTGCCACGGCCGTCTCTGCACTTTGGTACTGGGCATGGGGCCACAAGAACTACGCCGGCCCTCCTGTGCAAG
GAGAGTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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