Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|830
Gene name
Locationscaffold_124:12944..13589
Strand+
Gene length (bp)645
Transcript length (bp)588
Coding sequence length (bp)585
Protein length (aa) 195

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PFAM Domains

(None)

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|D4ALG0|LYSM1_ARTBC LysM domain-containing protein ARB_05157 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_05157 PE=1 SV=1 3 178 3.0E-12
sp|D4ALG0|LYSM1_ARTBC LysM domain-containing protein ARB_05157 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_05157 PE=1 SV=1 19 178 2.0E-09
sp|D4B4P8|LYSM2_ARTBC LysM domain-containing protein ARB_03438 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_03438 PE=3 SV=1 63 178 1.0E-08
sp|D4ALG0|LYSM1_ARTBC LysM domain-containing protein ARB_05157 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_05157 PE=1 SV=1 19 178 2.0E-07

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 18 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|830
MAKVSLILLSSVYLTASSTPSARNLGALSPFSVQAEEGVTSCVGWFQHTTARPYGELLNDLSVTFQDFEKWNPDV
EPLEQGLIPGRYYCIAAAQGPPAESSDGKLQRRKRSGPEKSCYTITGFSKTEQGCPFLYHVQPGDTCHHVQILYG
MSFEDLFKWNPSIGKDCGHFPAGVYLCVKKPSGVLNYGLSGLSVG
Coding >Ophio5|830
ATGGCAAAAGTCTCTCTTATCCTGCTGAGCAGTGTGTACTTGACAGCATCATCTACTCCTTCTGCACGCAATTTG
GGAGCCCTATCGCCATTTTCCGTCCAGGCCGAGGAGGGTGTGACAAGCTGCGTTGGCTGGTTTCAGCACACGACA
GCGCGCCCTTACGGGGAGCTTCTCAACGACTTATCCGTCACTTTCCAAGACTTCGAGAAATGGAATCCAGACGTT
GAGCCCTTGGAACAGGGCCTAATCCCCGGCCGCTATTACTGTATAGCTGCAGCCCAAGGTCCGCCAGCGGAAAGC
AGCGACGGCAAGCTACAACGGCGCAAAAGATCGGGGCCAGAAAAATCCTGTTACACGATAACGGGATTTTCGAAA
ACTGAGCAAGGTTGCCCATTTCTTTACCATGTCCAACCTGGCGATACGTGCCACCATGTCCAGATTTTGTACGGC
ATGTCGTTTGAGGATCTATTCAAGTGGAATCCAAGTATTGGAAAAGACTGTGGACACTTCCCTGCTGGCGTATAT
CTTTGTGTCAAGAAACCATCAGGCGTCCTCAACTACGGGCTTAGCGGGTTGAGCGTGGGA
Transcript >Ophio5|830
ATGGCAAAAGTCTCTCTTATCCTGCTGAGCAGTGTGTACTTGACAGCATCATCTACTCCTTCTGCACGCAATTTG
GGAGCCCTATCGCCATTTTCCGTCCAGGCCGAGGAGGGTGTGACAAGCTGCGTTGGCTGGTTTCAGCACACGACA
GCGCGCCCTTACGGGGAGCTTCTCAACGACTTATCCGTCACTTTCCAAGACTTCGAGAAATGGAATCCAGACGTT
GAGCCCTTGGAACAGGGCCTAATCCCCGGCCGCTATTACTGTATAGCTGCAGCCCAAGGTCCGCCAGCGGAAAGC
AGCGACGGCAAGCTACAACGGCGCAAAAGATCGGGGCCAGAAAAATCCTGTTACACGATAACGGGATTTTCGAAA
ACTGAGCAAGGTTGCCCATTTCTTTACCATGTCCAACCTGGCGATACGTGCCACCATGTCCAGATTTTGTACGGC
ATGTCGTTTGAGGATCTATTCAAGTGGAATCCAAGTATTGGAAAAGACTGTGGACACTTCCCTGCTGGCGTATAT
CTTTGTGTCAAGAAACCATCAGGCGTCCTCAACTACGGGCTTAGCGGGTTGAGCGTGGGATGA
Gene >Ophio5|830
ATGGCAAAAGTCTCTCTTATCCTGCTGAGCAGTGTGTACTTGACAGCATCATCTACTCCTTCTGCACGCAATTTG
GGAGCCCTATCGCCATTTTCCGTCCAGGCCGAGGAGGGTGTGACAAGCTGCGTTGGCTGGTTTCAGCACACGACA
GCGCGCCCTTACGGGGAGCTTCTCAACGACTTATCCGTCACTTTCCAAGACTTCGAGAAATGGGTCAGTTCTCCG
GGCTCCCTCGTCCGAAGCAAAGGAGTAGCTAATGCCAAGTTGCAGAATCCAGACGTTGAGCCCTTGGAACAGGGC
CTAATCCCCGGCCGCTATTACTGTATAGCTGCAGCCCAAGGTCCGCCAGCGGAAAGCAGCGACGGCAAGCTACAA
CGGCGCAAAAGATCGGGGCCAGAAAAATCCTGTTACACGATAACGGGATTTTCGAAAACTGAGCAAGGTTGCCCA
TTTCTTTACCATGTCCAACCTGGCGATACGTGCCACCATGTCCAGATTTTGTACGGCATGTCGTTTGAGGATCTA
TTCAAGTGGAATCCAAGTATTGGAAAAGACTGTGGACACTTCCCTGCTGGCGTATATCTTTGTGTCAAGAAACCA
TCAGGCGTCCTCAACTACGGGCTTAGCGGGTTGAGCGTGGGATGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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